Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_004775.1 Length=39671 Score E Sequences producing significant alignments: (Bits) Value seq2782 172 1e-38 seq3702 116 9e-22 >seq2782 Length=6651 Score = 172 bits (190), Expect = 1e-38 Identities = 441/665 (66%), Gaps = 10/665 (2%) Strand=Plus/Minus Query 27457 TATGCGAATGACCGCGGGCACGGCCTGTTTAATCCTGCTGCTGACATCAAGCCTTCATCA 27516 ||||| || |||| ||| | || | |||||| |||| || || || | || ||| Sbjct 949 TATGCAAACGACCACGGAGAACGCTTTGGTAATCCCGCTGAGGAAATTAAAGCATCCTCA 890 Query 27517 ATAGCCATGTTTAAGCCGCGCGACCGCACGCTACAACCTGAAG-AGATCGGCGTATTCTT 27575 || || | ||| |||| || ||| | || | |||| |||| |||| | ||||| || Sbjct 889 ATCGCAACTTTTCAGCCACGAGACAGAGCGTTG-AACCCGAAGGAGATAGCGGTATTTTT 831 Query 27576 CCGCGCTCTGGATCACATCGGGACTATGGCCACGATGAAACTGGCGTTAAAACTGGTGCT 27635 ||| ||||||| | | || | | | || ||||||||||| || ||||||||| Sbjct 830 CCGGTATCTGGATAAAGTTGGTGCCCTTCCGACAATGAAACTGGCATTGCGACTGGTGCT 771 Query 27636 GCTCACCCTAGTTCGTAAAAGTGAATTCACTCATTCCACATGGTCAGAGGTTGATTTCAA 27695 |||||| || || |||||||||||| | | | | | |||||| ||||| ||||| Sbjct 770 GCTCACACTGGTGCGTAAAAGTGAACTGATTAAAGCGACATGGGATGAGGTCGATTT--- 714 Query 27696 AAAATGGACG---TGGATCATACCGTCAGACCGTATGAAGGGAAGCCGGGCGCACGTTAT 27752 | || || ||| | ||||| | | | | ||||| | | | ||||| ||||| || Sbjct 713 TGAGGGGGCGTGCTGGGTGATACCCGCCGGCAGGATGAAAGCAGGGCGGGCACACGTGAT 654 Query 27753 CTATCTGCCAAAGCAGGCACAGGATCTCATGGTTGGCCTGCAGATGTGCGCTGGTGGAAG 27812 || ||| || ||||||| |||| | ||| || | | ||||| ||||| || Sbjct 653 TTACCTGTCAGAGCAGGCTTTGGATATTATGACGGGATTAAAAATGTGTGCTGGAGGTTC 594 Query 27813 TGAATACCTTTTGCCTGGGCGCTACTCAGTGAGCAAACCATTATCCAACGCCGCACTGAA 27872 || | || | || ||| ||| || ||| || ||||| | ||| | || Sbjct 593 AGATTTTATTCTACCATCGCGTTACGACACGACTAAATGTTTGTCCAATTCAGCATTAAA 534 Query 27873 CAGGCTTATCAATGTTACTGTCGAATCGGTAAATGATGCTGGTGGGTATCTGGATAACTT 27932 |||||| || | | || ||| || |||| | | || | ||||| | || Sbjct 533 CAGGCTGATTGACAGCGCAGTTGAACTGGCAAATAAAGAAGGGGAAAGACTGGAGCATTT 474 Query 27933 CTCTGTGCACGACCTGCGCCGAACAGCCAGCACGCTGTTACATGAGGCAGGGTAT-CCAT 27991 ||||| ||||| || | |||| || || |||||||||||||||| | | || Sbjct 473 TTCTGTTCACGATCTCAGGAGAACCGCATCGACATTGTTACATGAGGCAGGTTTTAACAG 414 Query 27992 CAGACTGGATTGAAAAGGCGCTGGCGCATGAACAGAAGGGAGTGCGAGCGGTATACAACA 28051 | ||||||||||||||| | ||||| | |||||| || ||| | || || ||||| | Sbjct 413 C-GACTGGATTGAAAAGTGTTTAGCGCACGGACAGAAAGGTGTGAGGGCCGTTTACAATA 355 Query 28052 AAGCGGAGTATGCCAGGCAGCGCGCCTACATGTTGCAGCAGTGGGCGGATATGGTTGATG 28111 |||| || ||||| |||||| | ||| | || |||||||| | |||||||||| Sbjct 354 AAGCTGAATATGCGGCCCAGCGCAGGAATATGCTCCAACAGTGGGCTAACATGGTTGATG 295 Query 28112 CCTGG 28116 |||| Sbjct 294 ACTGG 290 >seq3702 Length=11964 Score = 116 bits (128), Expect = 9e-22 Identities = 184/264 (70%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 39275 AATGGCTAAATCCCCAGCAGAGCGCAAAGCAGCGCAGCGTGCGCGGCAGTACGCCGCCGG 39334 |||| |||||||||||||||| || ||||| || ||||||| ||| ||| | || || Sbjct 7631 AATGCCTAAATCCCCAGCAGAACGTAAAGCCGCCCAGCGTGAGCGCCAGCGGGAGGCTGG 7690 Query 39335 TGAGCGCAAGCTTGAGCTGGTACTGGATGGGCAGGAACTGGAAATGCTGGCGCGGAACTG 39394 | |||| |||| || || ||| ||||||||||| |||||| |||||||| Sbjct 7691 CGTAACCAAGTTTGAACTTAACCTCGATACTCAGGAACTGGACATGCTGCGCCGGAACTG 7750 Query 39395 CACAGCCCGTCGCCATGGTCGTGCGCCGTATGACATGAGCGAGTACATCGCGTTGCTGAT 39454 | | | || | || | || || |||||| |||||| ||| ||||||||| Sbjct 7751 CGCTTTAAGGCGACCAGGCAAAGATCCCTACGACATGGACGAGTATATCCAGTTGCTGAT 7810 Query 39455 CCGCCAGGATGATGCCCGCGTTCGTGGCCGTATCAAATCCATCAGCGCGAACCGATGCGG 39514 ||||||||| || ||| | || || || || ||||| |||| | || || || Sbjct 7811 CCGCCAGGACGACGCCAGAGTACGCCAGCGGATTAAATCGCTCAGTAAACAACGGTGTGG 7870 Query 39515 GAAATGTGGCGATTCACTGCCGGT 39538 ||| |||||||| ||| |||| || Sbjct 7871 GAAGTGTGGCGAGTCATTGCCCGT 7894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126819623977728