Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_004827.1 Length=43033 Score E Sequences producing significant alignments: (Bits) Value seq3956 122 2e-23 seq3721 102 2e-17 seq2562 96.9 1e-15 seq2846 91.5 4e-14 seq2250 87.8 5e-13 seq2816 82.4 2e-11 >seq3956 Length=1013 Score = 122 bits (134), Expect = 2e-23 Identities = 211/306 (69%), Gaps = 8/306 (3%) Strand=Plus/Minus Query 16767 CACACTATCCGCACTTTAGCTATTAATAATGAACCTTGGTTTATTGCTAAGGACGTTTGC 16826 |||| | | |||||| | ||||||| |||| ||||||||| |||| ||||| ||||| Sbjct 620 CACATTGTTCGCACTATCATTATTAATGATGAGCCTTGGTTTGTTGCCAAGGATGTTTGT 561 Query 16827 GATGCAATAGGCATTGATAACAAC----CGTAAGGCGTTATTGGCATTAGATGAAGATGA 16882 ||| | | | | |||| | || | | | || ||||| || || || || Sbjct 560 GATTCTCTGGA----GCTAACGAATTCTCGCATGTCTCTACAAGCATTGGACGATGACGA 505 Query 16883 AAAGGGTGTAACTTTAAGTAACACCCTTGGCGGAAAGCAAGAAATGAACATCATCAGCGA 16942 |||| ||||| || || | |||||| ||| ||| ||| || | |||||| ||| Sbjct 504 GAAGGATGTAAGTTCAATTTACACCCCTGGAGGACGGCAGGACTTAGCTATCATCTCCGA 445 Query 16943 AAGCGGAATGTACACTTTAATTCTCCGCTGCCGTGACGCAGTGAAAAAAGGATCTGTGCC 17002 | ||| |||| ||| || | ||||||||||||||||| ||||| |||| | |||| Sbjct 444 ATCCGGCATGTTCACCTTGGTACTCCGCTGCCGTGACGCTGTGAAGCAAGGCACCCTGCC 385 Query 17003 ACACCGTTTTAGAAAATGGGTAACGGCAGAAGTGTTACCGGCAATTCGCAAAACGGGGAA 17062 || || || | || |||||||| || || | || |||||||||| || || || Sbjct 384 CCATCGCTTCCGCAAGTGGGTAACAAGTGAGGTACTTCCCTCAATTCGCAAGACCGGCAA 325 Query 17063 ATACGA 17068 |||||| Sbjct 324 ATACGA 319 >seq3721 Length=2264 Score = 102 bits (112), Expect = 2e-17 Identities = 91/113 (81%), Gaps = 1/113 (1%) Strand=Plus/Plus Query 5914 CTTCGCGGTCTAAAATATCCAGCACCCAGCGGCGGAAGTCTTTGGCTACTTTGGTGTGGC 5973 |||||||||| | ||||||||||||||| |||||| ||||||||||| | || || Sbjct 557 CTTCGCGGTCAAGAATATCCAGCACCCATTTGCGGAATTCTTTGGCTACATGAGTACGGG 616 Query 5974 TTAACATGCCGATGAGGTGTGCGCCGCGCAAGGAGAAGATGCG-CACTTTTTG 6025 |||||| | || || ||||||||||||| |||||||||||| ||||||| Sbjct 617 CAAACATGGCTATCAGATGTGCGCCGCGCAGGGAGAAGATGCGAGTCTTTTTG 669 >seq2562 Length=1341 Score = 96.9 bits (106), Expect = 1e-15 Identities = 229/341 (67%), Gaps = 10/341 (3%) Strand=Plus/Minus Query 13422 AAACGTGAGCGAGGAGATATT-GGATTTATTGGTATTGACTACTTAACGCTGATGAAAGC 13480 ||||| |||||| | || | | || | ||||| | || ||| | |||||||||| | Sbjct 480 AAACG-GAGCGAAGGGAAAATCGGCATGATTGGCGTGGATTACCTGACGCTGATGACGAC 422 Query 13481 CGAAAAAGCCGAGCGTAACGACTTAGCTTACG---GGCAAGTT-ACCAAAGAATTAAAAA 13536 ||| |||||||| || | | ||| || ||||| | ||||| | | || | Sbjct 421 CGATAAAGCCGAT----ACCAATGCGCTGGCGTTTGGCAATATCACCAAGGCGCTGAAGA 366 Query 13537 ATCTTGCGCGTGAAATGGATTGTGTGGTTTTGCTTTTAACTCAACTGAATCGTGGGCTTG 13596 | ||||| || ||||| || || |||| | || || || || || || | Sbjct 365 ACCTTGCCAAAGAGCTGGATACCGTCGTGGTGCTACTGACCCAGCTAAACCGCAATCTGG 306 Query 13597 AAAGTCGCTCAGATAAACGACCAATGCCAAGTGACAGCCGTGATACAGGACAAATTGAAC 13656 || ||| | | ||||| || ||||| ||||||||||| || | || || ||||| | Sbjct 305 AAGAGCGCGCCAACAAACGCCCCATGCCCAGTGACAGCCGGGAAAGTGGTCAGATTGAGC 246 Query 13657 AAGAGTGTGATTACTGGTTGGGACTTTATAAAGAATCCGTTTACAACGAAAACGCCGACC 13716 | || |||||||| |||||||| |||| ||||| ||||||| |||| |||||||| Sbjct 245 AGGATTGTGATTATTGGTTGGGTATTTACAAAGATCACGTTTACGACGACCACGCCGACG 186 Query 13717 CAAGTTTGACAGAAATTATCGTGCGATTAAATCGCCATGGT 13757 || | || ||| | || | || | ||||| |||||| Sbjct 185 AAACACTTACCGAACTCATTCTTCGCCTCAATCGGCATGGT 145 >seq2846 Length=1016 Score = 91.5 bits (100), Expect = 4e-14 Identities = 135/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 10899 TGGATTCAAAGAC-GAATCTCAGAATATGAATTCGTTGAAAATCAAGACTTTGTAGTTTT 10957 |||||| |||||| | ||| |||| | ||| || |||||||| |||||| ||||||| Sbjct 391 TGGATT-AAAGACCGCATCAAGCAATACGCATTTGTCGAAAATCAGGACTTTATAGTTTT 333 Query 10958 ACTCAAAAATGAGAAAAACCCTGTAGGGGGGCGACCATCAAGAGAAATCCATATATCCAT 11017 | ||| || | ||||||| ||| || || || || | ||| | ||| ||| Sbjct 332 CCCAGAAATTGGGGAAAACCCCAAAGGTGGCCGCCCTTCCATGGAATACGCTATCAGCAT 273 Query 11018 TGATATGGCAAAAGAATTATCAATGGTTGAGCGCAACGAAAAAGGAAAACAAGCCAGACA 11077 || ||||| ||||| | || |||||||||||||| || ||||| ||| | || | || Sbjct 272 CGACATGGCGAAAGAGCTTTCGATGGTTGAGCGCAATGAGAAAGGCAAAGAGGCACGTCA 213 Query 11078 ATATTTTAT 11086 || ||||| Sbjct 212 GTACTTTAT 204 >seq2250 Length=1935 Score = 87.8 bits (96), Expect = 5e-13 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 5914 CTTCGCGGTCTAAAATATCCAGCACCCAGCGGCGGAAGTCTTTGGCTACTTTGGTGTGGC 5973 |||||||||| | ||||||||||||||| ||| || |||||||| || ||| || Sbjct 743 CTTCGCGGTCAAGAATATCCAGCACCCATTTGCGAAACTCTTTGGCGACGGGGGTACGGG 684 Query 5974 TTAACATGCCGATGAGGTGTGCGCCGCGCAAGGAGAAGATGCG 6016 |||||| ||| ||| || |||||||||| ||| |||||||| Sbjct 683 CAAACATGGCGACGAGATGAGCGCCGCGCAGGGAAAAGATGCG 641 >seq2816 Length=1529 Score = 82.4 bits (90), Expect = 2e-11 Identities = 96/128 (75%), Gaps = 4/128 (3%) Strand=Plus/Plus Query 5914 CTTCGCGGTCTAAAATATCCAGCACCCAGCGGCGGAAGTCTTTGGCTACTTTGGTGTGGC 5973 |||||||||| | ||||||||||||||| ||| || |||||||| | |||| | Sbjct 413 CTTCGCGGTCAAGAATATCCAGCACCCATTTGCGAAACTCTTTGGCGATCGGCGTGTTGG 472 Query 5974 TTAACATGCCGATGAGGTGTGCGCCGCGCAAGGAGAAGATGCGCACTTTTTGGATTCCGC 6033 ||||| | || || || |||||||||| |||||||||||| | ||||| || ||| Sbjct 473 CGAACATTGCTATCAGATGAGCGCCGCGCAGGGAGAAGATGCGTA--TTTTG--TTACGC 528 Query 6034 CATTTGTC 6041 | ||||| Sbjct 529 AAATTGTC 536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137577517041920