Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_004913.3 Length=59866 Score E Sequences producing significant alignments: (Bits) Value seq3116 271 3e-68 seq3597 246 1e-60 seq3161 221 5e-53 seq2778 199 2e-46 seq2562 170 7e-38 seq2992 161 4e-35 seq3413 149 2e-31 seq2827 105 3e-18 seq3621 102 3e-17 seq2954 98.7 4e-16 seq3702 86.0 2e-12 >seq3116 Length=1110 Score = 271 bits (300), Expect = 3e-68 Identities = 259/329 (79%), Gaps = 2/329 (1%) Strand=Plus/Plus Query 31040 CTTTTCGCACTCGATGAAGTATCTGCGTATCTGTCGGCCTTTTTCGTTACGCTCTACCAT 31099 |||||| ||||| |||||||| | ||| | ||| |||||||| |||||||| || ||||| Sbjct 493 CTTTTCACACTCAATGAAGTAACGGCGAACCTGACGGCCTTTCTCGTTACGTTCGACCAT 552 Query 31100 CGCCGTTTCTTTGGCTGTATCGAGGGTAAGGTGGTAGTCTTTTTTCCCTCGCCCATAACC 31159 || |||||||| || || ||||| ||||||||||| ||| | ||||| || | ||| Sbjct 553 GGCAAGCTCTTTGGCCGTGTCCAGGGTGAGGTGGTAGTCCTTTCTGCCTCGTCCGTGACC 612 Query 31160 TATTTCCCGTTTCTGGGAAATAGCTATATAGTCCTGATTTTCAACGAATCCGTACTCTTC 31219 ||||||||| ||||||||||||||||| ||||||||||||| |||||| || |||| | Sbjct 613 TATTTCCCGATTCTGGGAAATAGCTATGTAGTCCTGATTTTTAACGAAACCAAACTCCGC 672 Query 31220 AATACGTTCTGTAATCCACGATGCAAAGCGTTTACCTACTCCAAGAAAAGTATGTAAATC 31279 ||| ||||| |||||||||| |||||| || |||||||| |||| || ||||| || Sbjct 673 AATCCGTTCGGTAATCCACGTTGCAAAACGCTTACCTACGGCAAGGAATTCATGTAGCTC 732 Query 31280 ACGGGCATTAACGAGAAGAGTGGTTTCGTTGGCGATAGTGCCGTTGAATACGGGGATGAG 31339 || |||| | || || |||| |||||| ||||| || ||||| ||||||||||| Sbjct 733 GCGTGCATCACAAAGTAGGGTGGATTCGTTACTTATAGTTCCTTTGAAAACGGGGATGAG 792 Query 31340 TTGACTGGTCATGATGACCTCCT-TATTT 31367 ||| | ||||| | || |||| ||||| Sbjct 793 TTGTGTTGTCAT-TTTACGTCCTCTATTT 820 >seq3597 Length=1779 Score = 246 bits (272), Expect = 1e-60 Identities = 200/238 (84%), Gaps = 7/238 (3%) Strand=Plus/Plus Query 31349 CATGAT-GACCTCCTTATTTGTTTAGTTTATAACCGCCAGTTAGTAGCTGGCGGTCGGGT 31407 |||||| | ||||||||| | |||||| || | ||||||||| ||||| | ||||| Sbjct 1515 CATGATAGGCCTCCTTATGTATTTAGTCTACGGCTACCAGTTAGTTGCTGGTAGCCGGGT 1574 Query 31408 GTCAACTGAGCCAAATAAGAAGCTCTGGGCATATTCCCCTTGCGGGTGTTGTATTACGCC 31467 ||||||||||||| |||||| |||| ||||||||||||||||||||| |||||||||||| Sbjct 1575 GTCAACTGAGCCACATAAGACGCTCCGGGCATATTCCCCTTGCGGGTATTGTATTACGCC 1634 Query 31468 TCTCCACCCGACCTTTGTACGGATGTAACTATGCCAAATTGCAGGCATAAAAAAGCCGCA 31527 |||||||||| |||| ||||||| | || ||| || | ||||||||||||||||| Sbjct 1635 TCTCCACCCGGCCTT----CGGATGTGATTACGCCGTTTTACGGGCATAAAAAAGCCGCA 1690 Query 31528 AAGCTATCGGGTGCGG-AGACCGCTTATTTGTTCAGTGCGGTCAGTAT-GCGATAGCT 31583 |||||||||||||| ||||||||||| | ||||||||||||||||| |||||||| Sbjct 1691 TGGCTATCGGGTGCGGAAGACCGCTTATGTATTCAGTGCGGTCAGTATCCCGATAGCT 1748 >seq3161 Length=3056 Score = 221 bits (244), Expect = 5e-53 Identities = 195/238 (82%), Gaps = 9/238 (4%) Strand=Plus/Plus Query 31349 CATGAT-GACCTCCTTATTTGTTTAGTTTATAACCGCCAGTTAGTAGCTGGCGGTCGGGT 31407 |||||| | ||||||| | |||||||||| | | ||||||||||||||| | | ||| Sbjct 2794 CATGATCGGCCTCCTTTGTAGTTTAGTTTA--ATCACCAGTTAGTAGCTGGTGACCAGGT 2851 Query 31408 GTCAACTGAGCCAAATAAGAAGCTCTGGGCATATTCCCCTTGCGGGTGTTGTATTACGCC 31467 |||||||||| | | ||| | ||| ||||||||||||||||||||| |||||||||||| Sbjct 2852 GTCAACTGAGTCTACAAAGCAACTCCGGGCATATTCCCCTTGCGGGTATTGTATTACGCC 2911 Query 31468 TCTCCACCCGACCTTTGTACGGATGTAACTATGCCAAATTGCAGGCATAAAAAAGCCGCA 31527 |||||||||| |||| ||||||| | || ||| |||| ||||||||||||||||| Sbjct 2912 TCTCCACCCGGCCTT----CGGATGTGATTACGCCGTTTTGCGGGCATAAAAAAGCCGCA 2967 Query 31528 AAGCTATCGGGTGCGG-AGACCGCTTATTTGTTCAGTGCGGTCAGTAT-GCGATAGCT 31583 |||||||||||||| |||||||| | ||||||||| |||||||| |||||||| Sbjct 2968 TGGCTATCGGGTGCGGTTGACCGCTTTGTAGTTCAGTGCTGTCAGTATCCCGATAGCT 3025 >seq2778 Length=2936 Score = 199 bits (220), Expect = 2e-46 Identities = 287/402 (71%), Gaps = 2/402 (0%) Strand=Plus/Minus Query 56023 GCATACCGTGATGGTGCGGGTATCTGGACCATCTGCCGTGGAGCCACCCGGGTGGATGGT 56082 || |||| |||||| | ||||||||||| || ||| |||| | || ||||| ||||| Sbjct 2140 GCCTACCCTGATGGCGGCGGTATCTGGACGATTTGCGGTGGCGTGACACGGGTAGATGGC 2081 Query 56083 AAGCCTGTTATTCCTGGCATGAAGCTGTCGAAGGAAAAATGCGACCGGGTTAACGCCATT 56142 ||||| || | ||||| |||||| | || | |||| | || | ||| Sbjct 2080 AAGCCGGTAGTGAAGGGCATAAAGCTGACCGCCGAGCAGTGCGCAAAGATTGATGCCGCA 2021 Query 56143 GAGCGTGATAAGGCGCTGGCATGGGTGGAGAAAAACATCAAAGTGCCGCTGACCGAACCC 56202 || | | |||||||| | |||||||| ||| | ||||||||||| || || | Sbjct 2020 GAACAGCAAAAGGCGCTCGATTGGGTGGACCGTAACGTTAAAGTGCCGCTCACTGAGACT 1961 Query 56203 CAGAAAGCGGGGATCGCGTCATTCTGTCCGTACAACATTGGTCCCGGTAAGTGTTTCCCG 56262 ||||||| || || || ||||| ||||||| || || ||||||||||| || ||| | Sbjct 1960 CAGAAAGTCGGCATTGCCTCATTTTGTCCGTGGAATATCGGTCCCGGTAACTGCTTCACC 1901 Query 56263 TCGACGTTTTACAGACGAATT-AATGCAGGTGATCGAAAAGGTGCCTGCGAAGCTATTCG 56321 || ||||| ||| | | |||| |||||||| |||| | |||||||| ||| ||| Sbjct 1900 TCAACGTTCTACCG-CAAATTGAATGCAGGCGATCTGATTGGTGCCTGTAAAGAGATTAA 1842 Query 56322 CTGGTGGATTAAGGACGGTGGCAGAGACTGCCGTATTCGTTCAAACAACTGTTACGGTCA 56381 | ||||| |||||| || | ||| |||||||| || |||||||||||||||| || Sbjct 1841 GCGCTGGATCTGGGACGGCGGGAAAGATTGCCGTATCCGCGCAAACAACTGTTACGGGCA 1782 Query 56382 GGTATCCCGTCGTGACCAGGAGAGCGCGCTGGCGTGCTGGGG 56423 | || || |||||||||||| || ||| | |||||||| Sbjct 1781 GATAGAGCGGCGTGACCAGGAGTCCGAGCTTTCTTGCTGGGG 1740 >seq2562 Length=1341 Score = 170 bits (188), Expect = 7e-38 Identities = 181/239 (76%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 46273 GGCATGATTCTGGTCGATTACCTGACACTAATGACCGCTGAGAAGGCCGATCGCAACGAC 46332 ||||||||| || ||||||||||| || ||||| | || || |||||| ||| | Sbjct 459 GGCATGATTGGCGTGGATTACCTGACGCTGATGACGACCGATAAAGCCGATACCAATGCG 400 Query 46333 CTTGCTTACGGCATGATCACCAAAGGACTGAAGAACCTTGCCAAAGAGCTTGATTGCGTT 46392 || || | |||| |||||||| | ||||||||||||||||||||||| ||| ||| Sbjct 399 CTGGCGTTTGGCAATATCACCAAGGCGCTGAAGAACCTTGCCAAAGAGCTGGATACCGTC 340 Query 46393 GTTGTGCTTCTGACGCAGCTTAACCGCGCACTGGAAAGCCGAACCAATAAACGCCCACTA 46452 || ||||| ||||| ||||| |||||| |||||| || |||| |||||||| | Sbjct 339 GTGGTGCTACTGACCCAGCTAAACCGCAATCTGGAAGAGCGCGCCAACAAACGCCCCATG 280 Query 46453 CCAAGTGACTCACGAGATACAGGGCAGATTGAACAGGATTGCGATTATTGGGTGGGGAT 46511 || |||||| || || | || |||||||| |||||||| ||||||||| |||| || Sbjct 279 CCCAGTGACAGCCGGGAAAGTGGTCAGATTGAGCAGGATTGTGATTATTGGTTGGGTAT 221 >seq2992 Length=1942 Score = 161 bits (178), Expect = 4e-35 Identities = 227/319 (71%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 56720 CCGTGCCGTTTCACGGCAACTCTCTTTATGTAGTTAACCATAATGGCGAACCATACGTTC 56779 |||| | || |||||| || ||| ||| | || ||||| || |||||||| || | Sbjct 406 CCGTATCATTCCACGGCGACAATCTCTATCTCGTCAACCACAACGGCGAACCCTATACCC 465 Query 56780 CCATGAAACCTGTCGTTGCGGGGATGGGGCTGGCCTGGCAATCACAGTTGGCTAAGTTAA 56839 | ||||| || | || | | |||||| ||| ||| || | ||| | | Sbjct 466 CGATGAAGCCCATTGTAGAAAGCATGGGGATGGATTGGATGGGGCAATATTTAAAGCTTA 525 Query 56840 GACAGCGTTTTGCGTCAACTATAACGGAAATCGTTATGGTTGCTGAGGATGGGAAACAAC 56899 ||| | ||| ||||||||| ||||||| ||||||||| | || ||||| || | Sbjct 526 AACATAGATTTAGCTCAACTATAGAGGAAATCTCTATGGTTGCCGGAGACGGGAAGCAGC 585 Query 56900 GCAATATGGTGTCCATGCCACTTCGAAAACTTGCCGGCTGGCTACAAACCATTAATCCCA 56959 |||| ||||| | | | || || ||||| || || || ||||| || ||||| | || || Sbjct 586 GCAAAATGGTCTGCCTCCCTCTCCGAAAGCTCGCAGGGTGGCTCCAGACCATCAGTCTCA 645 Query 56960 ACAAAGTAAAACCCGAAATCCGCGATAAGGTCATCCGGTATCAGGAAGAGTGCGACGATG 57019 ||||||| || || ||||||||||| ||||| || |||||| | ||||||||||||| Sbjct 646 ACAAAGTTAATCCTGAAATCCGCGACAAGGTGATGAAATATCAGAACGAGTGCGACGATG 705 Query 57020 TTCTTTACGAGTACTGGAC 57038 | || |||||||| ||||| Sbjct 706 TGCTCTACGAGTATTGGAC 724 >seq3413 Length=1126 Score = 149 bits (164), Expect = 2e-31 Identities = 355/535 (66%), Gaps = 50/535 (9%) Strand=Plus/Plus Query 38638 TTTCGACAATGCGCTCGGCTTCATCCTTGTCATAGATACCAGCAAATCCGAAGGCCAGAC 38697 |||||| || ||||| ||||| || |||| || || |||||||| || || |||| | Sbjct 626 TTTCGATGATCCGCTCTGCTTCGTCGCTGTCGTAAATGCCAGCAAACCCAAATGCCATGC 685 Query 38698 GGGCACACTGAATCATGGCTTTATGCCGTAACATCCGTTTGGGATGCGACTGCCACGGGC 38757 | ||||||||||||| | || || || | ||| || |||| || || |||||||| Sbjct 686 GTGCACACTGAATCAGTGACTTGTGGCGCAGCATACGGGTGGGGTGTGATTGCCACGG-- 743 Query 38758 CGGTGATTTCTCTGCCTTCGCGGGTTTTGAATGGTTCGCGGCGGCATTCATCCATCCACT 38817 || |||| ||| | || | | || |||| | | Sbjct 744 ---------------CT----GGGTATTGC---GCTCAC------ACTCGCCCATGTATT 775 Query 38818 CGGTAACG-CAGATCGGATGATTACGGTCTTTGCGGTAAATCCGGCATGTACAGGATTCA 38876 |||| || ||| | || || || || ||||| |||||||||| ||| || | | | Sbjct 776 CGGTGACTACAG-TGGGGTGTTTGCGATCTTTACGGTAAATCCTGCAAGTCGATGCGCCC 834 Query 38877 TTGTCCTGCTCAAAG------TCCATGCCATCAAACTGCTGGTTTTCATTGATGATGCGG 38930 | ||||| || || ||||||||||| || ||| | | ||| || ||||| || Sbjct 835 TCGTCCTTATCGTAGCTGAATTCCATGCCATCGAATTGCGGATGTTCGTTAATGATCCGC 894 Query 38931 GACCAGCCATCAACGCCCACCACCGGAACGATGCCGTTCTGCTTATCAGGGAAGGCGTAA 38990 | ||| ||||| || || || |||||||| || ||| || | ||||| ||||||||| Sbjct 895 GCCCATCCATCGACACCGACAACCGGAACAATCCCGCCCT---TGTCAGGAAAGGCGTAA 951 Query 38991 ATTTCTTTCGTCCACGGATTAAGGCCGTACTGGTTGGCGACGATCAACAATGCGATGAAC 39050 |||||||| |||||||| || || |||||||||||||| ||||| | | ||| | || Sbjct 952 ATTTCTTTTGTCCACGGGTTGAGTCCGTACTGGTTGGCAACGATAAGTAGGGCGGTAAAT 1011 Query 39051 TGCGCATCGCTGGC---ATCACCTTTAAATGCCGTCTGGCGAAGAGTGGTGATCAGTTCC 39107 ||| | || || | | | || || || ||||| | || ||| | || | ||| Sbjct 1012 TGCTCGTCCGTGACGTTACCCCCCTTGAACGCCGTATTCTTCAGCGTGCTCATTAATTC- 1070 Query 39108 TGTGGGTCGACAGAATCCATGCCGACACGTTCAGCCAGCTTCCCTGCCAGCGTTG 39162 ||| | | | ||||||| | ||||||||||| || || |||| |||| Sbjct 1071 ----GGT-GCCTGGTGCCATGCCAAGGCGTTCAGCCAGTTTTCCAGCCATTGTTG 1120 >seq2827 Length=1523 Score = 105 bits (116), Expect = 3e-18 Identities = 143/198 (72%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 43891 CTATTCACTATTGGAAATCTTAAGAAATGGAACAAACAAGTTACAGCAAACTATCACAGC 43950 ||||| ||| |||| || || ||||||| |||| |||||||||| ||||| | Sbjct 1099 CTATTACCTAAAGGAATACT-AACAAATGGATATTACAAACTACAGCAAACCGTCACAAC 1157 Query 43951 GAGAAATTGATCGCGCTGAAACTGATTTACTCATCAACCTGTCAACGCTTACCCAGCGCG 44010 |||||||||||| |||||||| || || ||||||| ||| || | || ||| |||| Sbjct 1158 AAGAAATTGATCGTGCTGAAACGGACTTGCTCATCATCCTTTCCAAACTGACCGGGCGCA 1217 Query 44011 GTCTGGCAAAGATGATTGGCTGTCATGAATCGAAGATAAGCAGAACGGACTGGAGATTTA 44070 | ||| || | || ||||| |||||||| || || | || |||||| | |||| Sbjct 1218 AGTTCGCAGAGTTTGCCGGGTGTCACGAATCGAAAATCAGTCGCACCGACTGGCGCTTTA 1277 Query 44071 TTGCTTCGGTCTTGTGTG 44088 | || | |||||||||| Sbjct 1278 TCGCCACTGTCTTGTGTG 1295 >seq3621 Length=2627 Score = 102 bits (112), Expect = 3e-17 Identities = 142/198 (72%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 43891 CTATTCACTATTGGAAATCTTAAGAAATGGAACAAACAAGTTACAGCAAACTATCACAGC 43950 ||||| ||| |||| || || ||||||| |||| |||||||||| ||||| | Sbjct 341 CTATTACCTAAAGGAATACT-AACAAATGGATATTACAAACTACAGCAAACCGTCACAAC 283 Query 43951 GAGAAATTGATCGCGCTGAAACTGATTTACTCATCAACCTGTCAACGCTTACCCAGCGCG 44010 |||||||||||| |||||||| || || ||||||| ||| || | || ||| |||| Sbjct 282 AAGAAATTGATCGTGCTGAAACGGACTTGCTCATCATCCTTTCCAAACTGACCGGGCGCA 223 Query 44011 GTCTGGCAAAGATGATTGGCTGTCATGAATCGAAGATAAGCAGAACGGACTGGAGATTTA 44070 | || || | || ||||| |||||||| || || | || |||||| | |||| Sbjct 222 AGTTCGCGGAGTTTGCCGGGTGTCACGAATCGAAAATCAGTCGCACCGACTGGCGCTTTA 163 Query 44071 TTGCTTCGGTCTTGTGTG 44088 | || | |||||||||| Sbjct 162 TCGCCACTGTCTTGTGTG 145 >seq2954 Length=2725 Score = 98.7 bits (108), Expect = 4e-16 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 43915 AAATGGAACAAACAAGTTACAGCAAACTATCACAGCGAGAAATTGATCGCGCTGAAACTG 43974 ||||||| |||| |||||||||| ||||| | |||||||||||| |||||||| | Sbjct 1350 AAATGGATATTACAAACTACAGCAAACCGTCACAACAAGAAATTGATCGTGCTGAAACGG 1409 Query 43975 ATTTACTCATCAACCTGTCAACGCTTACCCAGCGCGGTCTGGCAAAGATGATTGGCTGTC 44034 | || ||||||| ||| || | || ||| |||| | || || | || |||| Sbjct 1410 ACTTGCTCATCATCCTTTCCAAACTGACCGGGCGCAAGTTCGCGGAGTTTGCCGGGTGTC 1469 Query 44035 ATGAATCGAAGATAAGCAGAACGGACTGGAGATTTATTGCTTCGGTCTTGTGTG 44088 | |||||||| || || | || |||||| | ||||| || | |||||||||| Sbjct 1470 ACGAATCGAAAATCAGTCGCACCGACTGGCGCTTTATCGCCACTGTCTTGTGTG 1523 >seq3702 Length=11964 Score = 86.0 bits (94), Expect = 2e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 46285 GTCGATTACCTGACACTAATGACCGCTGAGAAGGCCGATCGCAACGACCTTGCTTACGGC 46344 || ||||| || || || ||| || ||| ||| || ||| ||| | ||| ||| Sbjct 5906 GTTGATTATCTCACCCTGATGCGCGGTGAAGCGGCAGAGCGCCGCGATATCAGTTATGGC 5965 Query 46345 ATGATCACCAAAGGACTGAAGAACCTTGCCAAAGAGCTTGATTGCGTTGTTGTGCTTCTG 46404 |||||||| || || || || || || ||||| || |||||| | || |||| || Sbjct 5966 GCGATCACCACCGGGCTTAAAAATCTGGCGAAAGAACTGGATTGCATCGTGCTGCTGCTT 6025 Query 46405 ACGCAGCTTAACCGCGCACTGGAAAGCCGAACCAATAAACGCCCACTACCAAGTGACTCA 46464 || ||||| ||||| | | |||| || || | |||||||| ||||| |||| Sbjct 6026 ACCCAGCTAAACCGTGGATTGGAGCAGCGCGCCGACAAACGCCCTTTACCATCTGACAGT 6085 Query 46465 CGAGATACAGGGCAGATTGAACAGGATTGCGA 46496 ||||| ||||| || || ||||||||||| Sbjct 6086 AAGGATACCGGGCAAATCGAGCAGGATTGCGA 6117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191440578894848