Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_005056.1 Length=32684 Score E Sequences producing significant alignments: (Bits) Value seq2852 203 7e-48 seq3842 132 1e-26 seq2657 104 5e-18 >seq2852 Length=1514 Score = 203 bits (224), Expect = 7e-48 Identities = 354/503 (70%), Gaps = 19/503 (4%) Strand=Plus/Plus Query 23567 TGTGTATCGCTCAAATGCTACAGCCTCAGCTTTTCTTTCAAATTTCCTGCGGATGCGTTT 23626 |||||| |||||||| ||||| || || | | || | |||||| || || ||||| || Sbjct 625 TGTGTAGCGCTCAAAGGCTACCGCTTCCGTTCTTTTCTCAAATCGCCGCCGAATGCGCTT 684 Query 23627 TCCGTCGCGACCGCGAGGTCTAATGTCCACTTCATAGCGTCCATCATCGAGCTTCTTAAT 23686 ||| ||| ||| || | ||||||||||| || | || |||| ||||||||||| Sbjct 685 CCCGCTGCGTCCGATCGGGCGTATGTCCACTTCGTATTGACCCCCATCAAGCTTCTTAAT 744 Query 23687 TGACATAAGAAAGCCCTCTGACGCTGTGTTCACCATCTTGGTAACAAATGGTGAAAATGT 23746 ||||||||||||||||| || | | ||| | ||| || ||| |||| || Sbjct 745 CGACATAAGAAAGCCCTCCGAGGAAGCAATCA---TTTTGAAAATCAATATAAAAAAGGT 801 Query 23747 AATGTTTA-TAGAGTGTTAACCAGTCTGTTTTTCGGAGTGGTCTGATTCTGTTGGTTTTT 23805 || || | || | ||| ||| | | | ||||| |||| ||| |||| || | Sbjct 802 AA-GTAAAGTAAACACTTAGCCAATTTTGTGATCGGATTGGTGAGATATTGTTTCTTCTA 860 Query 23806 GCCCAATGTGTGCGAGAGCCGGCGCGATCTGACCAGCTTGTGGTGACGTATCACCAGTCA 23865 |||||||||||||||| ||||| || | ||||||||||| |||| || | | | |||| Sbjct 861 GCCCAATGTGTGCGAGGGCCGGTGCTACCTGACCAGCTTCCGGTGCTGTCTTATCTGTCA 920 Query 23866 TTAACCAGAGCGTATATTTTTTAAATAAAGGC--GTAT-TTGTGACTCGCATAA-CGATG 23921 ||| ||| | |||||||||| |||| || | || | || | |||||| ||| Sbjct 921 TTAGCCATAAGGTATATTTTTCAAAT---TGCTTGCATCTAGTTAGAAGCATAACCGA-- 975 Query 23922 CTG-AGACCAGGGTCTTTATGCCCACTTTCGTAATTTTTGACTGTTCCTAGAGCTATCCC 23980 ||| || ||||| ||| || || | ||||||||||| | || | || || ||||| Sbjct 976 CTGTAGGCCAGGTTCTGCGTGTCCTCCCTCGTAATTTTTTAACGTACTTAATGCCATCCC 1035 Query 23981 GCTAATTTCGCTGAATTTCGCCTGTGTTAAGCCTTCTGCTTTCCTAATCGCTTTCAGTTT 24040 ||| ||||| | |||||||| || ||||| || || || || ||||| ||||| | ||| Sbjct 1036 GCTGATTTCACAGAATTTCGATTGAGTTAAACCCTCAGCCTTTCTAATGGCTTTGATTTT 1095 Query 24041 T--TCGAATGTCTGCATTTGACA 24061 | || || || ||||||||| Sbjct 1096 TTGTCCCATATC--CATTTGACA 1116 >seq3842 Length=22882 Score = 132 bits (146), Expect = 1e-26 Identities = 139/183 (76%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 12404 GCGACCAACAGCACGTCTGAAACACTGGCCGCAACGCCGAAAGCGGTTAAGGCCGCATAT 12463 ||||||||||||| |||||| |||| || ||||| ||||| || || || || ||| Sbjct 22588 GCGACCAACAGCAATGATGAAACGATGGCGGCGACGCCAAAAGCAGTGAAAGCAGCCTAT 22647 Query 12464 GACCTTGCTAACGGGAAATATACCGCACAGGACGCCACCACCGCGCGAAAAGGCCTTGTC 12523 ||||| || | ||||||||| | |||||||| || | |||| || ||| ||| ||||| Sbjct 22648 GACCTCGCCAGCGGGAAATACTCAGCACAGGATGCGAGCACCAGGCAAAAGGGCATTGTC 22707 Query 12524 CAGCTCAGTAGCGCGACTAACAGCACGTCTGAAACGCTCGCCGCAACACCAAAAGCCGTT 12583 | | ||||||||||| ||||||| ||||||| | || || ||||| ||||| || Sbjct 22708 AGGTTGAGTAGCGCGACCAACAGCAATGATGAAACGATGGCTGCCACACCCAAAGCGGTG 22767 Query 12584 AAG 12586 ||| Sbjct 22768 AAG 22770 Score = 116 bits (128), Expect = 8e-22 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 22737 GGATTCAGCGCGACGGCATTTTGCAGGTAGTCAGGCGCAAGGTGCGCATAGGCCATCGTC 22796 ||||| ||||| | ||||| |||||| ||||| || || ||||| ||||||| ||| ||| Sbjct 174 GGATTGAGCGCTATGGCATCTTGCAGATAGTCTGGTGCGAGGTGTGCATAGGTCATGGTC 233 Query 22797 TGCTGAATGCTCGCATGTCCCAGAATCTGTTGCAGTGCGATTATATTGCCCCCATTCATC 22856 ||||||||| | || ||||||| |||| || || | | |||||||| ||||| ||| Sbjct 234 TGCTGAATGTTTGCGTGTCCCATTATCTTCTGTAGCGTCAAAATATTGCCTCCATTAATC 293 Query 22857 ATGAAATGGCTTGCGAATGTATGCCGCAGGATGTGGGTTGCCTG 22900 || || || || |||||||| || || | ||| | ||| || Sbjct 294 ATAAAGTGCGCCGCAAATGTATGACGTAGTACGTGTGCTGCTTG 337 Score = 114 bits (126), Expect = 3e-21 Identities = 313/474 (66%), Gaps = 12/474 (3%) Strand=Plus/Plus Query 12075 ATTATATTATCGCAGAGCTGGTTATTCCGCCGGAGGTG--GGCGGTTTCTGGATGCGAGA 12132 || ||||||| || | || ||| || || || | || || || |||||||| || || Sbjct 22047 ATCATATTATTGCCGTGCAGGTGATCCC--CGAAAATGAAGGGGGATTCTGGATACGTGA 22104 Query 12133 GCTTGGCCTGTACGATGATGCGGGAACGTTAATTGCCGTGGCGAACATGGCCGAAAGTTA 12192 | ||||||| |||| || || | || ||||| || || ||| ||||||| || Sbjct 22105 AATCGGCCTGTTTGATGCTGAAGGTAATTTGATTGCGGTTGCCAACTGCGCCGAAACCTA 22164 Query 12193 TAAACCTACCCTTGCCG-AAGGCTCAGGGCGTTCGCAGACCTGCCGCATGGTCATCATCG 12251 ||| || | |||| | ||||| || ||| |||||| |||||| | | || | Sbjct 22165 TAAGCCG-CAATTGCAGGAAGGCAGCGGACGTATTCAGACCGTGCGCATGATTTTGATTG 22223 Query 12252 TCAGCAGTGTGGCCTCAGTGGAGCTGACCATTGACACCACAACGGTGATGGCGACGCAGG 12311 || ||| | |||| ||| | ||||| | | |||| |||| |||| | Sbjct 22224 TCTCCAGCACAGAAACAGTATCGCTTAAAATTGATCCGGCGGTGGTGCTGGCAACGCGTG 22283 Query 12312 ATTACGTTGATGACAAAATTGCAGAGCATGAACAGTCACGACGT---CACCCGGATGCCT 12368 || || ||||| || || ||||||| | | | ||| || || || || Sbjct 22284 GCTATGTGGATGATGCTATCGCTACGCATGAAAA---AAGCCGTAAACATCCAGACGCAA 22340 Query 12369 CGCTGACCGCAAAAGGTTTTACTCAGTTAAGCAATGCGACCAACAGCACGTCTGAAACAC 12428 |||| |||||||| ||| || || |||||||| || |||| | |||| | Sbjct 22341 CGCTTGAGGCAAAAGGCTTTGTGCAATTGAGCAATGCCACGGACAGTGCCAGTGAAGCGA 22400 Query 12429 TGGCCGCAACGCCGAAAGCGGTTAAGGCCGCATATGACCTTGCTAACGGGAAATATACCG 12488 |||| |||||||||||||| || || | | |||||||| || | ||||||||| | | Sbjct 22401 TGGCGGCAACGCCGAAAGCAGTGAAAACAACCTATGACCTCGCCAGCGGGAAATACTCAG 22460 Query 12489 CACAGGACGCCACCACCGCGCGAAAAGGCCTTGTCCAGCTCAGTAGCGCGACTA 12542 ||||||| || | ||| || ||| ||| ||||| ||| |||||||| ||| Sbjct 22461 CACAGGATGCGAGCACTAGGCAAAAGGGCATTGTCAGGCTGAGTAGCGCNCCTA 22514 Score = 105 bits (116), Expect = 1e-18 Identities = 228/340 (67%), Gaps = 1/340 (0%) Strand=Plus/Plus Query 11423 TGTGGAACCCGGACACCTGCCCGGCAAATCTGCTGCCGTGGCTGGCGTGGGCGTTTTCGG 11482 ||||| | |||| | |||||| | | |||||||| | ||||| |||||||| || | Sbjct 21331 TGTGGGATGCGGAGAAATGCCCGCTAGACCTGCTGCCTTTTCTGGCCTGGGCGTTGTCCG 21390 Query 11483 TCGACAGGTGGGATGAAAAGTGGCCGGAAGCGACCAAACGTGCCGTTATCCGCGATGCCT 11542 | ||| | |||||| || ||| | ||| ||||| ||| || || |||| Sbjct 21391 TTGACCGCTGGGATAAACGCTGGTCAGAACAAACCAAGCGTCAGGTGATTAAATCAGCCT 21450 Query 11543 ATTTCATCCACTGTCATAAAGGCACTATCGGCGCAATCCGGCGTGTGGTGGAGCCGCTCG 11602 || || ||| | || |||||||| || | ||| | || || ||||| ||||| | | Sbjct 21451 GGTTGATACACCGCCAGAAAGGCACCATTGCCGCGCTGCGCCGGGTGGTTGAGCCATTTG 21510 Query 11603 GCTATCTCATTAACGTGACGGAGTGGTGGGAAAACAGTGACCCGCCAGGCACCTTCCGGC 11662 | || | | ||||| || |||||| ||| | | | ||| || ||||| | | Sbjct 21511 GTTACTTGCTGCGCGTGATCGAATGGTGGCAAACCGGCGGTGTGCCGGGAACCTTTCACC 21570 Query 11663 TTGATATTGGTGTACTGGAAAGCGGTATCACAGAGGCAATGTATCAGGAAATGGAACGGC 11722 | ||||| || || | ||| | |||||| || || | || | | || || || |||| Sbjct 21571 TGGATATCGGCGTGCAGGACAACGGTATTACTGAAGAAACCTTTTTAGAGATTGAGCGGC 21630 Query 11723 TGATTGCTGATGCCAAACCTGCAAGCCGCCACCTTATTGG 11762 |||||||||| ||||| || ||||| || ||| |||| Sbjct 21631 TGATTGCTGACGCCAAGCCGCTTAGCCGTCA-CTTGTTGG 21669 Score = 104 bits (114), Expect = 5e-18 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 9875 AACCCGTGTCACCCTGGACACACCGGAAGTGGTCTGCACCAACAAACTGACTACCGGCAC 9934 ||||| | ||| ||| || || ||||||||| | || |||||||| ||||| || ||||| Sbjct 19789 AACCCATATCATCCTAGATACGCCGGAAGTGATTTGTACCAACAAGCTGACGACAGGCAC 19848 Query 9935 GCTGGAAGTGCAGAAGGGCGGGACGATGCGCGGCAACATCGCGCATACCGGCGGTGAACT 9994 |||||||||||| || ||||| |||| ||||||||| || || | |||||| | | Sbjct 19849 GCTGGAAGTGCAAAAAGGCGGAGAAATGCACGGCAACATTGCACACAGCGGCGGCGCGTT 19908 Query 9995 CTCATCAAACGG 10006 | | || ||||| Sbjct 19909 CACCTCCAACGG 19920 Score = 91.5 bits (100), Expect = 3e-14 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 12461 TATGACCTTGCTAACGGGAAATATACCGCACAGGACGCCACCACCGCGCGAAAAGGCCTT 12520 |||||||| || | ||||||||| | |||||||| || | ||| || ||| ||| || Sbjct 22513 TATGACCTCGCCAGCGGGAAATACTCAGCACAGGATGCGAGCACTAGGCAAAAGGGCATT 22572 Query 12521 GTCCAGCTCAGTAGCGCGACTAACAGCACGTCTGAAACGCTCGCCGCAACACCAAAAGCC 12580 ||| ||| ||||||||||| ||||||| ||||||| | || || || |||||||| Sbjct 22573 GTCAGGCTGAGTAGCGCGACCAACAGCAATGATGAAACGATGGCGGCGACGCCAAAAGCA 22632 Query 12581 GTTAA 12585 || || Sbjct 22633 GTGAA 22637 >seq2657 Length=15264 Score = 104 bits (114), Expect = 5e-18 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22752 GCATTTTGCAGGTAGTCAGGCGCAAGGTGCGCATAGGCCATCGTCTGCTGAATGCTCGCA 22811 |||| |||||||||||| || |||||||| ||||| | ||| || || || ||||| || Sbjct 14972 GCATGTTGCAGGTAGTCCGGGGCAAGGTGAGCATACGTCATAGTTTGTTGTATGCTGGCG 15031 Query 22812 TGTCCCAGAATCTGTTGCAGTGCGATTATATTGCCCCCATTCATCATGAAATGGCTTGCG 22871 || || | ||||| || | || | || || || || ||||||| |||||||| ||| Sbjct 15032 TGCCCTAATATCTGCTGTAACGCCACTAAGTTTCCTCCGTTCATCACAAAATGGCTGGCG 15091 Query 22872 AATGTATGCCGCAGGATGTG 22891 |||||||| ||||| || || Sbjct 15092 AATGTATGTCGCAGAATATG 15111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104462277505536