Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_005066.1 Length=164018 Score E Sequences producing significant alignments: (Bits) Value seq2351 192 6e-44 seq3176 105 7e-18 seq3532 95.1 1e-14 seq2563 86.0 7e-12 >seq2351 Length=10305 Score = 192 bits (212), Expect = 6e-44 Identities = 291/412 (71%), Gaps = 4/412 (1%) Strand=Plus/Minus Query 135785 CATCAGGTTATTAATCTGTACGCCGTAATCAAGATGACGAATGCGGTTATCTTCCACCCC 135844 |||||| || || | ||| ||||||||||| || ||||| | |||||| ||||||| || Sbjct 2996 CATCAGCTTGTTCAACTGCACGCCGTAATCGAGGTGACGCACGCGGTTGCCTTCCACGCC 2937 Query 135845 CTTATTGTTCTTTAACACAATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAG 135904 |||||||| | ||| | ||| ||||| | || | |||||||| |||||| | | Sbjct 2936 ACGGTTGTTCTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACAGCGGGTAAAACAA 2877 Query 135905 AGTCGCCGCCCCGCCACGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATG 135964 || ||||| ||||| || | |||||| |||||||| || || || || ||||| ||||| Sbjct 2876 CGTTGCCGCTCCGCCGCGCACACCGCCCTGTGAGCAGGATTTCACTGCGGTCTGGAAATG 2817 Query 135965 TTTCCAGAATGGGATAACGCCAGTATGACGAA--CTTCACCATGCCCGATCTTAGATCCT 136022 ||| |||| || ||| ||||||||| ||| |||||||| | ||| || Sbjct 2816 TTTATAGAAAGGAATACAGCCAGTATG--GAATGCTTCACCACCGCGAATCGGGCTACCC 2759 Query 136023 TCCGCGCGAATCATACCAGCGTTGATACCGATGCCAGCACGCTTGCTAATATACTTGATG 136082 ||| ||||| ||| ||||| || ||||| || ||||||| || || || | | Sbjct 2758 AGCGCACGAATACGACCGGCGTTAATGCCGATACCGGCACGCTGTGAAACGTATTTCACG 2699 Query 136083 ATTGCATTTGCTGTTTCGTTGATGCCCTGCAATGAGTCATCACTTTCAATCACCACGCAC 136142 || ||| | | || |||| ||| | || ||| | | ||||||| |||||| Sbjct 2698 ATAGCACTGGAGGTGGCGTTAATGGAATCCAGGCTGTCGCCGCACTCAATCAACACGCAG 2639 Query 136143 GAACTAAATTGTCGTGTTGGAGTACGCACACCCGCCATAATCGGAGTAGGCA 136194 || || || || || ||||| |||||||| || | ||| ||||| || |||| Sbjct 2638 GAGCTGAACTGACGGGTTGGGGTACGCACGCCGGACATGATCGGCGTTGGCA 2587 >seq3176 Length=18404 Score = 105 bits (116), Expect = 7e-18 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 53616 AAATTAGAGAGATTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAG 53675 |||||| | || | || || ||||| | |||||||| ||||||| ||| ||||| Sbjct 6312 AAATTACATTGACTGAGTGAAAGTACGGGTAATAACGTCTTGCTGCTGTTCTTTGGTCAG 6371 Query 53676 ACTATTGAAGCGCACCGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGG 53735 ||||||||||| || ||||||||||| || || || | |||||| || || || || Sbjct 6372 CGAGTTGAAGCGCACGGCATAACCAGAAACACGGATGGTCAACTGCGGATATTTTTCCGG 6431 Query 53736 ATGTTCAACAGCGTCCAGCAACATTTCTCGTAACAATACGTTAATATTCAAATGCTGACC 53795 ||||| | || |||| || |||||| || || ||||| | |||| || ||||| Sbjct 6432 GTGTTCCATGGCATCCAACAGCATTTCACGGTTCATCACGTTCACGTTCAGGTGTTGACC 6491 Query 53796 ACCTTC 53801 |||||| Sbjct 6492 ACCTTC 6497 >seq3532 Length=11862 Score = 95.1 bits (104), Expect = 1e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 53628 TTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGACTATTGAAGCG 53687 ||| || || ||||||| || |||||||| ||||| ||||| |||| ||||| || Sbjct 11159 TTCAGTGAAAGTACGCGTAATCACGTCACGTTGCTGTTCTGGGGTCAATGAGTTGAAACG 11218 Query 53688 CACCGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGATGTTCAACAGC 53747 ||| || ||||||||||| || || || | ||||||||| || || || |||| || || Sbjct 11219 CACTGCATAACCAGAAACACGGATGGTCAACTGCGGGTATTTTTCCGGGTGTTTTACCGC 11278 Query 53748 GTCCAGCAACATTTCTCGTAACAATACGTTAATATTCAAATGCTGACCACCTTCAAC 53804 || || | |||| || || ||||| | |||| || || || ||||| || Sbjct 11279 ATCTTCCAGCGTTTCACGGCGCAGAACGTTCACGTTCAGGTGTTGCCCCCCTTCCAC 11335 >seq2563 Length=1848 Score = 86.0 bits (94), Expect = 7e-12 Identities = 210/309 (68%), Gaps = 12/309 (4%) Strand=Plus/Minus Query 54712 TAATATTTTATT---TTGGATCTGGG-TATTTGCTGTGTGGCAATTGTAGATGAGGACCA 54767 ||||||| | || ||| || ||| |||| ||| ||| ||||| | |||||| ||| Sbjct 1133 TAATATTATGTTCCATTGCATACGGGATATTCTCTGAATGGTAATTGAAAATGAGGCCCA 1074 Query 54768 TCTTTAAAACTAGTCCAATCCCCACCCCATTCAACAGGAACACCCAATTC--TCGACCAG 54825 ||||| | | |||||||| || |||||||||| |||| || || |||| | Sbjct 1073 TCTTTTAGTGTTGTCCAATCACCTCCCCATTCAATGGGAATGGATAACTCCTTCGAT--G 1016 Query 54826 CTTGTTTAAATGCATCAGCGATCATGC-GGTAATATTTCATATTCCATGTATCCTTATCT 54884 |||||||||||||||| || || ||| ||||||||| | |||| || | ||| | Sbjct 1015 CTTGTTTAAATGCATCTGCAAT-TTGCTCATAATATTTCCAAGTCCAATTAACGTTACCA 957 Query 54885 TTCGGATACGCTACAACGTCAACCGCGAAACCGTGAAGATGACGAGATTTCATAGTCTTA 54944 || || || || || ||||| ||| ||| |||||| | | ||||| || || Sbjct 956 TTGACGTATGCGACTACATCAACGGCGTGACCTGTAAGATGCCTACTATTCATTGT-TTG 898 Query 54945 GAT-TTACCTTCCGCAACATATTTCTTTTGCGTTTCTAGACTACGCACACCTTCCGTAAT 55003 | | ||||||| | || | || || || |||| | ||| ||||| ||||| Sbjct 897 GCTCTTACCTTGTGAAAAAAGTTGTTTCTGTCTTTCAATTGAGCGCCTTCCTTCTGTAAT 838 Query 55004 ACCAAAATC 55012 |||||||| Sbjct 837 GCCAAAATC 829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 524703573411840