Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_005069.1 Length=46339 Score E Sequences producing significant alignments: (Bits) Value seq2778 259 1e-64 seq3702 168 2e-37 seq3694 86.0 2e-12 seq3443 80.6 8e-11 >seq2778 Length=2936 Score = 259 bits (286), Expect = 1e-64 Identities = 372/520 (72%), Gaps = 6/520 (1%) Strand=Plus/Minus Query 42962 TCAACAAAAAGCAAATTGAGCGCGGCAATTCTGGCGCTGATCGCTACTGGAGCTTCTGCA 43021 |||| | ||||||| | ||||| | ||| |||||||| |||||| |||| || |||| Sbjct 2251 TCAAAAGCAAGCAAACTCAGCGCAGTAATGCTGGCGCTAATCGCTGCTGGCGCGACTGCT 2192 Query 43022 CCAGTAATGATGTCTCAATTTCAGAAAGAAAAAGAAGGCACAAGCCTGATTGCTTATCCT 43081 || || |||||| | ||||| |||| |||||||| | ||| ||| || ||| Sbjct 2191 CCCGTGATGATGGCGCAATTCCAGACTGAAAAAGAGTCTGTCCGTATGAATGCCTACCCT 2132 Query 43082 GACAACGGCGGTGTCTGGACTATTTGCGGTGGTGTTACGCGCGTGGACGGAAAACCAGTC 43141 || ||||||| ||||||| ||||||||||| || || || || || || || || || Sbjct 2131 GATGGCGGCGGTATCTGGACGATTTGCGGTGGCGTGACACGGGTAGATGGCAAGCCGGTA 2072 Query 43142 GTTAAGGGCATGAAGCTCACT--CAAACACAATGCAACTCCATCGACAAGGCAGAGCAAG 43199 || |||||||| ||||| || | | || |||| || || ||||| || | Sbjct 2071 GTGAAGGGCATAAAGCTGACCGCCGAGCAGTGCGCAAAG--ATTGATGCCGCAGAACA-G 2015 Query 43200 CCAAAG-CGCTGTTATGGGTGCAGAAGAATGTCTACGTTCCTCTGACAGAGCCGCAAAAG 43258 | |||| |||| |||||| | || || | || || || || ||| | || || Sbjct 2014 CAAAAGGCGCTCGATTGGGTGGACCGTAACGTTAAAGTGCCGCTCACTGAGACTCAGAAA 1955 Query 43259 GTCGGGATCGCTTCATTCTGCCCTTGGAACATTGGCCCGAGTAAATGTTTCACTTCTACG 43318 ||||| || || ||||| || || ||||| || || || |||| || ||||| || ||| Sbjct 1954 GTCGGCATTGCCTCATTTTGTCCGTGGAATATCGGTCCCGGTAACTGCTTCACCTCAACG 1895 Query 43319 TTCTATCGAAAATTAAATTTAGGCGACCGCTTAGGCGCGTGCGCTGAAATTAAACGCTGG 43378 ||||| || ||||| ||| |||||| | | || || || || ||||| |||||| Sbjct 1894 TTCTACCGCAAATTGAATGCAGGCGATCTGATTGGTGCCTGTAAAGAGATTAAGCGCTGG 1835 Query 43379 ATACATGACGGCGGGAAAGATTGCCGTATTCGCTCCAATAACTGTTACGGGCAGATAGAG 43438 || ||||||||||||||||||||||| ||| | || ||||||||||||||||||||| Sbjct 1834 ATCTGGGACGGCGGGAAAGATTGCCGTATCCGCGCAAACAACTGTTACGGGCAGATAGAG 1775 Query 43439 CGCCGTGAACAAGAAAGCGAATTAACGTGTTGGGGGCTGG 43478 || ||||| || || ||| | | || |||||||||| Sbjct 1774 CGGCGTGACCAGGAGTCCGAGCTTTCTTGCTGGGGGCTGG 1735 >seq3702 Length=11964 Score = 168 bits (186), Expect = 2e-37 Identities = 329/482 (68%), Gaps = 8/482 (2%) Strand=Plus/Plus Query 41162 GGCGAAACAAGGCCCATTGCTGATGCGCGCCAGCAACGATA--AGCCTATCAAAAAAGGC 41219 |||||| ||||||||| ||| ||| || | | | || || ||||||||||||||||| Sbjct 10597 GGCGAACCAAGGCCCACCGCTTATGTGCACAA--AGCGGTAGGAGCCTATCAAAAAAGGC 10654 Query 41220 TCCATAATTCTATGGAAAACACTGTAAAAATAAACAGTGCAAGTTTAGTACATGCCGATT 41279 | | | || ||| |||| |||||||| ||||||||| | | || |||| || | Sbjct 10655 CCGTTTAATCCATGAAAAATACTGTAAATTTAAACAGTGTGAACATTGTTAATGCAGACT 10714 Query 41280 CGTTGCAATACATTAAAACCCTGCCCGACAATTATATCGA--TGCAATCATTACTGATCC 41337 | ||||||| |||||| ||| |||| || || | || || || | || || || || Sbjct 10715 CATTGCAATTCATTAAGACCTTGCCTGATAACTGCATTGACCTGATAGCA--ACGGACCC 10772 Query 41338 CCCCTACTACCGAGTTAAATCGAATAGTTGGGATAATCAATGGGCATCGGTTCCCGATTT 41397 || || ||||| |||||||| || ||||||||||| ||| ||| | || | Sbjct 10773 ACCGTATTACCGGGTTAAATCCAACGCCTGGGATAATCAGTGGAAATCATCGCAAGAGTA 10832 Query 41398 TCTAGCGTGGCTTGATGAGTTTTTTGCTGAATTTTGGCGGGTACTGAAACCTAATGGTTC 41457 || || |||||||| | | |||| || || ||||| ||||| |||||| || Sbjct 10833 CCTTGCCTGGCTTGACGCAATGTTTGTGGAGTTCTGGCGTGTACTAAAACCTGCGGGGAG 10892 Query 41458 TCTTTATTTATTTTGTGGCCCCAAGTTATCGGCGGATACAGAAATATTGATGAGAGATAG 41517 ||| ||| | || || ||| | | | || ||| || || | ||| | || | Sbjct 10893 TCTGTATGTGTTCTGCGGCTGGCACCTTGCCGCAAATATTGAGCTACTCATGCGTGAGCG 10952 Query 41518 GTTTAATGTGTTGAATCATATTGTTTGGGCAAAACCATCTGGCCGCTGGAAAGGGGCGAG 41577 |||| |||| ||||||| || | ||||| ||||| ||||| |||||||| || || Sbjct 10953 GTTTGATGTTCTGAATCACATCATATGGGCCAAACCCTCTGGGCGCTGGAACGGTTGCAG 11012 Query 41578 TAAAGAGTCTTTCCGATCCTATTTCCCAGCTACTGAGCATGTTTTATTTGCTGAGCATTA 41637 || || ||| || || || ||||| || ||||| | | | |||||| |||| || Sbjct 11013 GAAGGAAGATTTACGGTCTTACTTCCCGGCAACTGAACGAATCCTGTTTGCTCAGCACTA 11072 Query 41638 TG 41639 || Sbjct 11073 TG 11074 Score = 134 bits (148), Expect = 4e-27 Identities = 185/259 (71%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 41999 GAATATGAAGTGCTTCGGCGTCCGTTCAATGTCTCTAAGTCAGTTCCACATACGAACGTA 42058 ||||||||| || ||||||||||||| || || || ||| | || | || Sbjct 11413 GAATATGAAAGTCTGCGGCGTCCGTTCACGGTATCCGCACTGGTGCCATACACCGATGTG 11472 Query 42059 TGGACCTATCCGCCAGTTCAGCATTACCCAGGAAAGCATCCATGCGAGAAACCTCTCCCT 42118 ||||| || |||||||| ||| |||| ||| ||||||||||| || |||||| Sbjct 11473 TGGACGTACCCGCCAGTGCAGTTCTACCTAGGCAAGCATCCATGTGAAAAACCTGCTGAG 11532 Query 42119 ATGATGCTAGATATTATTGCCGCGAGCACTCGCCCCGGTGATTTAGTAGCAGATTTTTTC 42178 ||||||| || ||| | | || |||| ||| || |||||| | || || ||||| ||| Sbjct 11533 ATGATGCATGAGATTGTCTCTGCAAGCAGTCGTCCTGGTGATGTGGTGGCTGATTTCTTC 11592 Query 42179 ATGGGTTCAGGTGCGACAATTAAAGCGGCAGAACAGTTAGGCAGACGTTCATTAGGTGTT 42238 ||||| ||||| || || |||||||| || ||||||| | | | || | || ||| Sbjct 11593 ATGGGCTCAGGGGCAACGATTAAAGCCGCTATTAAGTTAGGGCGCCATGCACTTGGCGTT 11652 Query 42239 GAACTCGAAGAAGAGCGAT 42257 || | ||||||||||||| Sbjct 11653 GAGTTTGAAGAAGAGCGAT 11671 >seq3694 Length=2063 Score = 86.0 bits (94), Expect = 2e-12 Identities = 111/152 (73%), Gaps = 1/152 (1%) Strand=Plus/Plus Query 37435 AACGATCTTGATGTCAGAACAATGGTTAGCTTGGGGCGTGCAATCGGCTTTGATCCAAAG 37494 || || | ||| |||||||| || || || || || | |||||| ||||| || ||| Sbjct 1607 AATGACCGTGACGTCAGAACGATTGTGGAGTTAGGCCGAGAAATCGGTTTTGACCCTAAG 1666 Query 37495 CGAGATATGCCATTTGATGGTGAACGCCACAATGCATTAGCTGATGCTATTCATCAGGCA 37554 || ||||| ||||| ||||||||||| |||||| | ||||| ||| || ||||| Sbjct 1667 AAGGAAATGCCGTTTGAAGGTGAACGCCATAATGCACTGGCTGACGCTGAGCACCAGGCT 1726 Query 37555 AAATACGTTTCAGCTATTTACCAGCGGCTTGT 37586 || || || || || || | |||| |||||| Sbjct 1727 AAGTATGTATCTGCAATCTGGCAGC-GCTTGT 1757 >seq3443 Length=6003 Score = 80.6 bits (88), Expect = 8e-11 Identities = 89/116 (77%), Gaps = 2/116 (2%) Strand=Plus/Minus Query 23717 CAAATTATGGCAGTCCAGGCGGAGCAGCTTTCGAGCTGGCCGGTATCCGTTGGGGCCGGT 23776 |||||||||| | |||| || ||| | || | | |||||||| ||| | ||||||| Sbjct 1511 CAAATTATGGTGGCTCAGGTGGGGCATCCTTTGTGATGGCCGGTGTCCACTAAGGCCGGT 1452 Query 23777 ATTCCTACCTCCGTTTGGGCTGCCACCCCATAGAGTGTAGGAACTCTGGTGGTAGC 23832 ||| ||| || | |||||| |||||| || |||||| |||||||||||||||| Sbjct 1451 -TTCTGACCCCCATCTGGGCTACCACCCTAT-GAGTGTCAGAACTCTGGTGGTAGC 1398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148156218550016