Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_005083.2 Length=244834 Score E Sequences producing significant alignments: (Bits) Value seq2333 183 5e-41 seq2351 167 4e-36 >seq2333 Length=8475 Score = 183 bits (202), Expect = 5e-41 Identities = 1040/1635 (64%), Gaps = 77/1635 (5%) Strand=Plus/Minus Query 7631 AAAGAAAATGCCAATAAAGACTCGAAAGTGATCCCTACAATGCGTGACTTGGTAGCTGGT 7690 || || || ||||| |||||| ||||| |||||||| ||| ||| || | || ||| Sbjct 5626 AACGAGAACGCCAACAAAGACAGTAAAGTAATCCCTACCCAGCGCGACCTGCTGGCCGGT 5567 Query 7691 ACAGTGTCGAAACAATATGCACTGGAAGAATATC-TACCGAAGCACATTGCAGACGCTCA 7749 | || | || || || || | || | |||| | ||| || | | ||||| Sbjct 5566 ATCGTTGCCAAGCACTACGCCAAGCAACA-TATCCTGCCGCGCGACGTGGTGCTTGCTCA 5508 Query 7750 T-ATCGACGGCGATATTCATTTTCACGACCTTGATTATAGCCCACTATTCCCGCAATTCA 7808 | | || ||| || ||||| | ||||| || || || ||| | |||||| |||| Sbjct 5507 TGAACG-CGGTGAAATTCACTACCACGATCTGGACTACTCCCCGTTCTTCCCGATGTTCA 5449 Query 7809 ACTGTATGCTTATCGACATCAAGGGGATGTT--CGAAGGTGGGTTCAAAATGGGTAACGC 7866 |||||||||| |||||| | | || ||||| | |||| ||||||| ||||||||||| Sbjct 5448 ACTGTATGCTGATCGACCTTGAAGGCATGTTGACCAAGG--GGTTCAAGATGGGTAACGC 5391 Query 7867 TGAAATTGAAGAGCCAAATAGCATTGCGACTGCTGCGACTATCGTAACT---CAGATCAT 7923 || ||||| ||||| ||| | || || ||| || || || ||||| Sbjct 5390 GGAGATTGAGCCACCAAAATCCATCTCAACCGC---GACAGCAGTGACGGCCCAAATCAT 5334 Query 7924 TCAGCAAGTAAGCAGCCACATCTATGGCGGCAACACAATCAATCGCATCGACGAAGTGCT 7983 ||| || ||||||||||| ||||||| ||| || || || ||||| ||| | || Sbjct 5333 CGCGCAGGTGGCAAGCCACATCTACGGCGGCACCACCATTAACCGTATCGATGAAATTCT 5274 Query 7984 TGCTCCTTATGTT--CGCAAGTCGTACTACAAATGGTTAGAAATCGGTCGAGAAGAACAT 8041 || || | || ||| || | || | | | | | | | ||| | |||| Sbjct 5273 GGCACCGTTCGTCACCGCCAGCCTTAAAAAGCACCGGGAAACTGCTGATGAGTGGCACAT 5214 Query 8042 -CCAGATTCAGATTCAAAAGCCGCGATCTTTGCTCGTAAACGTGTTGAGAAAGAAACGTA 8100 || ||| | || | | || || | |||||| || ||||| || Sbjct 5213 TCCCGATGCGGACGCCTATGCA-----CTGT-CTCGTACC------GAAAAAGAGTGCTA 5166 Query 8101 TGATGCGTTTCAGACTTTTGAATACCAAGTCAATACAATGCAGACTTCAAATGGTCAGAC 8160 || || || ||| | | ||||| |||| ||||| |||| || | ||||||||||| Sbjct 5165 CGACGCCTTCCAGTCGCTGGAATATGAAGTAAATACGCTGCACACCGCCAATGGTCAGAC 5106 Query 8161 ACCATTCACGACAATCAACTTCGGTTTAGGTACTTCGTGGGAAGAGAAACTGATTCAGAA 8220 ||| || || | |||||| | || || |||||| | ||||||||| | Sbjct 5105 ACCGTTTGTCACCTTTGGTTTCGGTCTCGGCACCCGTTGGGAATCGCGCCTGATTCAGCA 5046 Query 8221 AAGCATTCTGCAAAATCGTATTGCTGGTCTAGGCAAGACTAAGAAAACTGCTATCTTCCC 8280 | ||| |||| || || ||||| ||||| ||||| | ||||| || | ||||| Sbjct 5045 ATCCATCCTGCGCAACCGCATTGCCGGTCTGGGCAAAAACCGTAAAACCGCGGTGTTCCC 4986 Query 8281 GAAACTTGTTTTCACGTTGAAAGACGGTGTTAACTTGAAAGAAGGTGATCCTTGTTACGG 8340 ||||| || ||| | | |||||||| || || | | ||||| || | Sbjct 4985 CAAACTGGTGTTCGCTATCCGCGACGGTGTCAATCACAAGGCTGCCGATCCGAACTATGA 4926 Query 8341 AATCAAGAAGCTTGCTCTTGAGTGTGCAAGTAAACGCATGTACCCAGACATTTTGAACTA 8400 |||||| | || || || || || || || || || |||||||| || ||| | || || Sbjct 4925 CATCAAGCAACTGGCACTGGATTGCGCCAGCAAGCGGATGTACCCGGATATTCTCAATTA 4866 Query 8401 TGAAAAGCTAGTTGAAACAACTGGCGGATTCAAGTCGCCTATGGGATGTCGTTCATT-CT 8459 || || | ||| | || ||| || ||| |||||||||| || || || || Sbjct 4865 CGATCAGGTGGTTAAGGTTACCGGCTCGTTTAAGACGCCTATGGGCTGCCGCAGTTTCCT 4806 Query 8460 TGG-GTGAATGGAAAAATGAAGATGGCGAAACTG-TATTCGACGGTCGTAATAACTTAGG 8517 ||| ||| ||| | ||||| ||| || | | | ||| ||||| || ||| | || Sbjct 4805 TGGCGTGTATG-----AGGAAGAGGGC-AAGCAGATCCACGATGGTCGCAACAACCTCGG 4752 Query 8518 TGTTGTTTCTATAAACATCCCGCGTATTGCAATCGAAGCGTCGGGAGACACTGAA---CG 8574 || | | ||| | ||||| || || | |||| | | | | | ||| || Sbjct 4751 GGTAATCAGCCTCAACCTGCCGCGCATCGCGCTGGAAG---CAGAACATAACGAAGAGCG 4695 Query 8575 TTTCTTCGAGATCTTGCACGAACGT-TGTACACTAGCTTACGAAGCGTTGATGTTGCGTA 8633 ||||| | | ||| | | ||| || | ||| || | ||||||||||| ||| | Sbjct 4694 TTTCTGGAACCTGTTGGATAATCGTCTGCA-ACTGGCGAAAAAAGCGTTGATGACGCGCA 4636 Query 8634 TCAAGCGTTTTGACGATGTTACTGCATCAGTTGCACCGATTCTGTACTGTGAAGGCGCTA 8693 || ||||||| || | || | || || || || || ||||| |||||||| Sbjct 4635 TCGAGCGTTTGGAAAACGTCAAAGCCCGTGTCGCTCCAATCCTGTATATGGAAGGCGCCT 4576 Query 8694 TGGGCGTACGCTTG-AAGCCAACTGATAAAGTCAGTGAAGTGTTCAAGAACGGTCGCGCA 8752 || |||||| || |||| || || || || ||| | ||||| |||||||| ||| Sbjct 4575 GTGGTGTACGCCTGAAAGCGGAC-GACAACGTTGCTGAGATCTTCAAAAACGGTCGGGCA 4517 Query 8753 AGTATCTCACTCGGTTACATCGGTCTGCATGAG-GCTGTAACGCTGCTTTCGCCTGACAA 8811 |||||| | || || || || | |||||| | |||||| ||| | || ||| Sbjct 4516 TCGATCTCATTGGGCTATATTGGGGTTCATGAGACCATTAACGC-GCT---GTTTGGCAA 4461 Query 8812 --AGACATGCACACATTCGAGTCGCAGCACAAGCAATTCCTTGCTGAAAAG--------- 8860 ||||| ||| |||| | | ||||| || ||||||| Sbjct 4460 CCAGACA--CACGTGTTCG------ATAATGAGCAA---CTGCGTGAAAAGGCGGTCGCC 4412 Query 8861 ATTGTTGAGACG-CTTAGAGCGTACACAGACGCATGGAAAGAACTGACTGGCTACGGATT 8919 || || | ||| || | ||| || || ||||||||| || |||||||| || Sbjct 4411 ATCGTCG-CACGCCTGAAAGCCGCGACCGATCAGTGGAAAGAAGAAACCGGCTACGGTTT 4353 Query 8920 CAGTCTATACAGCACGCCAAGCGAATCGCTATGTGATCGTTTCTGTCGTCTCGATCAAGA 8979 ||| || ||||| ||||| || ||| || ||||| ||||| || ||| |||| | Sbjct 4352 CAGCCTTTACAGTACGCCGAGTGAAAACCTGTGTGACCGTTTTTGCCGTATCGACACCGC 4293 Query 8980 GAAATACGGTATCATTACGGGTATCAACGACAAAGACTATTACACGAACTCGTTTCACTT 9039 ||| ||| | | | || | | ||| |||| || ||||| ||| || ||||| Sbjct 4292 TGAATTCGGCGTGGTACCAGGCGTGACCGATAAAGGTTACTACACCAACAGCTTCCACTT 4233 Query 9040 AGATGTGTTCAAGAAAGTGAATCCGTTCGAGAAGATTGATTTCGAAGCAGCATACCCAAT 9099 || ||| ||||| |||||||| | | |||| || || || ||| | |||||| Sbjct 4232 GGACGTGGAGAAGAAGGTGAATCCTTACCAGAAAATCGACTTTGAACTGCCCTACCCACC 4173 Query 9100 TCATGCGAATGGTGGTTTCATCTGCTATGCTGAATTCCCGAACATGCGAGACAACATCAA 9159 | || || || || ||||| ||||| | || | |||||| ||| | | ||| | || Sbjct 4172 GCTGGCAAACGGAGGCTTCATTTGCTACGGCGAGTATCCGAACCTGCAACATAACCTTAA 4113 Query 9160 AGGTCTAGAGCGCGTATGGGATTACGCATATAAGAAAGTTGCGTACTTCGGCACAAACAC 9219 || || || ||| ||||||||| |||| || | || | |||||| || || Sbjct 4112 AGCGCTGGAAGACGTCTGGGATTACAGTTATAGCCGTGTGCCCTATTACGGCACCAATAC 4053 Query 9220 GCCGATTGACCAGTG 9234 |||||| || |||| Sbjct 4052 GCCGATCGATGAGTG 4038 >seq2351 Length=10305 Score = 167 bits (184), Expect = 4e-36 Identities = 345/501 (69%), Gaps = 22/501 (4%) Strand=Plus/Plus Query 147119 CTTTTATAACGCTGTTTCAAC--TCAAAAACTTTCGCTACCTACACCGATTATGGCAGGC 147176 ||| ||| |||| |||| || |||| | |||| | || || ||||| ||| | ||| Sbjct 2552 CTTCTATGACGCGATTTCTACCTTCAAGA--TTTCATTGCCAACGCCGATCATGTCCGGC 2609 Query 147177 GTTCGTACCCCGACACGTCAATTTAGCTCGTGTGTGAAAATCGAATCTGGCGACTCGCTG 147236 || |||||||| || ||||| || ||||| || ||| || || | |||||| ||| Sbjct 2610 GTGCGTACCCCAACCCGTCAGTTCAGCTCCTGCGTGTTGATTGAGTGCGGCGACAGCCTG 2669 Query 147237 CGTTCGATCAACAAGGTATCTGAAG--CTATCGTTGATTACATTAGTAAACGTGCGGGTA 147294 ||| || ||| | | || || ||||||| | ||| || | ||||| |||| Sbjct 2670 GATTCCATTAAC--GCCACCTCCAGTGCTATCGTGAAATACGTTTCACAGCGTGCCGGTA 2727 Query 147295 TTGGCGTAAACGGTGGTGCAATTCGAGCAGAGGGTT---CGGTTGTACGTGCGGGTGAA- 147350 | ||| | |||| ||| ||||| || |||| || || || | |||||| Sbjct 2728 TCGGCATTAACGCCGGTCGTATTCGTGCGCTGGGTAGCCCGATT---CGCGGTGGTGAAG 2784 Query 147351 -ATTCGTCACACTGGCGTAATTCCTTTCTGGAAACACTTTCAGACTGCGGTTAAATCGTG 147409 |||| || |||||| |||||||||| ||||| || ||||| || || ||||| || Sbjct 2785 CATTC--CATACTGGCTGTATTCCTTTCTATAAACATTTCCAGACCGCAGTGAAATCCTG 2842 Query 147410 TTCTCAAGGTGGTGTACGTGGCGGTGCTGCGACTCTGACTTACCCGATCTGGCACTTAGA 147469 || || || ||||| || ||||| || || || || ||||||| | ||||| | || Sbjct 2843 CTCACAGGGCGGTGTGCGCGGCGGAGCGGCAACGTTGTTTTACCCGCTGTGGCATCTGGA 2902 Query 147470 AGTAGAAAAGCTTCTTGTTCTGAAGAACAACAAAGGTGTTGAAGAGAACCGTATTCGTCA 147529 ||| |||| || || || |||||||||||| || || |||| ||||| | ||||| Sbjct 2903 AGTGGAAAGCCTGCTGGTGCTGAAGAACAACCGTGGCGTGGAAGGCAACCGCGTGCGTCA 2962 Query 147530 TCTTGACTACAGCGTATCAATT-AACCGATTGATGATGCAACGCCTGGT-TAATAACGAG 147587 || || ||| |||| || || ||| ||||| || |||||||| || || || Sbjct 2963 CCTCGATTACGGCGT-GCAGTTGAACAAGCTGATGTATCAGCGCCTGGTCAAAGGACAAG 3021 Query 147588 TACATCACGCTATTCAGCCCC 147608 | ||||| || ||||||||| Sbjct 3022 -AAATCACCCTGTTCAGCCCC 3041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 783301946296320