Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq3532 111 2e-19 seq3176 87.8 2e-12 seq2373 86.0 7e-12 >seq3532 Length=11862 Score = 111 bits (122), Expect = 2e-19 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 65939 TTAAAGGGATTGTGTGAAAGTTCGCGTGATTACGTCCCGTTGTTGCTCAGGAGTTAATGC 65998 ||| ||| || |||||||| ||||| || ||||| ||||| || || || || |||| Sbjct 11150 TTACAGGCTTTCAGTGAAAGTACGCGTAATCACGTCACGTTGCTGTTCTGGGGTCAATGA 11209 Query 65999 ATTAAAGCGTACGGCATAACCGGAAACACGGATGGTTAGTTGGGGATATTTTTCTGGATT 66058 || || || || |||||||| |||||||||||||| | || || |||||||| || | Sbjct 11210 GTTGAAACGCACTGCATAACCAGAAACACGGATGGTCAACTGCGGGTATTTTTCCGGGTG 11269 Query 66059 AACGATTGCATCTTCCAGGGTATTTCGGTCAAGAACATTTACGTTGAGATGCTGACCACC 66118 | ||||||||||| || | ||| ||||| || ||||| || || || || || Sbjct 11270 TTTTACCGCATCTTCCAGCGTTTCACGGCGCAGAACGTTCACGTTCAGGTGTTGCCCCCC 11329 Query 66119 TTCAAC 66124 ||| || Sbjct 11330 TTCCAC 11335 >seq3176 Length=18404 Score = 87.8 bits (96), Expect = 2e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 65946 GATTGTGTGAAAGTTCGCGTGATTACGTCCCGTTGTTGCTCAGGAGTTAATGCATTAAAG 66005 || || |||||||| || || || ||||| | || || || || | | || ||| Sbjct 6322 GACTGAGTGAAAGTACGGGTAATAACGTCTTGCTGCTGTTCTTTGGTCAGCGAGTTGAAG 6381 Query 66006 CGTACGGCATAACCGGAAACACGGATGGTTAGTTGGGGATATTTTTCTGGATTAACGATT 66065 || ||||||||||| |||||||||||||| | || ||||||||||| || | | || Sbjct 6382 CGCACGGCATAACCAGAAACACGGATGGTCAACTGCGGATATTTTTCCGGGTGTTCCATG 6441 Query 66066 GCATCTTCCAGGGTATTTCGGTCAAGAACATTTACGTTGAGATGCTGACCACCTTC 66121 ||||| ||| | | |||| | || || ||||| || || ||||||||||| Sbjct 6442 GCATCCAACAGCATTTCACGGTTCATCACGTTCACGTTCAGGTGTTGACCACCTTC 6497 >seq2373 Length=3101 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 65374 TTAATTGGTGGTCCCTATTGGATTCGAACCAATGACCAACGACTTAGAACGACGTTGCTC 65433 |||| |||| |||||| ||||||||||| |||||| ||| ||||||| | |||||||| Sbjct 1579 TTAAATGGTACGCCCTATAGGATTCGAACCTATGACCTACGGCTTAGAAGGCCGTTGCTC 1520 Query 65434 TGTCCAGCTGAGCTAAG 65450 | |||| |||||||||| Sbjct 1519 TATCCAACTGAGCTAAG 1503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555335653985280