Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_005178.1 Length=37611 Score E Sequences producing significant alignments: (Bits) Value seq3688 596 4e-166 seq1892 122 2e-23 >seq3688 Length=22785 Score = 596 bits (660), Expect = 4e-166 Identities = 921/1307 (70%), Gaps = 27/1307 (2%) Strand=Plus/Plus Query 14033 CCGGACGGCCAGCACGAAGCCATTGCGGCGCCGCGTGGTAATGCCAAGTCCACCCTGGTG 14092 ||| | ||| |||| || ||||| || ||||||||||| | |||||||| || ||||| Sbjct 6451 CCGAAAGGCGAGCAGGACGCCATCGCCGCGCCGCGTGGGGAGGCCAAGTCAACGCTGGTC 6510 Query 14093 AGCCAGATATTCGTGATCTGGTGCGTACTCACCGGCCGCAAGCATTACCCCCTGATCATC 14152 |||||| | || ||| | ||||| | | |||| |||||| || ||||| | | Sbjct 6511 AGCCAGCTGTTTGTGCTGTGGTGTCTGGTGCGCGGCATCAAGCACTATGCCCTGGTGGTG 6570 Query 14153 ATGGATGCCTTCGAACAGGCCGCCACGATGTTGGAGGCGATCAAGGCGGAGCTGGAGTTC 14212 |||||| || |||| |||||| | ||||| | || || |||||||| |||||||| ||| Sbjct 6571 ATGGATTCCATCGACCAGGCCTACCCGATGCTCGAAGCCATCAAGGCCGAGCTGGAATTC 6630 Query 14213 AATCCGCGCCTGGCCATGGACTTCCCCCAGGGCGCCGGCAAGGGCCGCGTCTGGCAAGTC 14272 || || || ||| ||||||||| | | | ||||| ||| ||||||||||| | Sbjct 6631 AACCCCCGGCTGCTGGCTGACTTCCCCGAAGCCTGCGGCATGGGGCGCGTCTGGCAGATG 6690 Query 14273 GGCACCATCGTTACGGCGAACGATGCCAAGGTCCAGGTCTTCGGCTCCGGCAAGCGGATG 14332 ||||||||| | ||| |||||| |||||| ||||| |||| ||| || | || Sbjct 6691 GGCACCATCCTGACGCGCAACGATATCAAGGTGCAGGTGGCCGGCAGCGGTAAAAAGCTG 6750 Query 14333 CGCGGCCTTCGACACGGCCCGCACCGTCCTGACCTGGTGGTCGGCGACGACCTGGAGAAC 14392 |||||||| || ||||| ||| |||| |||||||||||| | ||||| | |||||| Sbjct 6751 CGCGGCCTGCGCCACGGGCCGTACCGCCCTGACCTGGTGATACTGGACGATATTGAGAAC 6810 Query 14393 GACGAGAACGTCCGCAGCCCGGAGCAGCGCGACAAGCTGGAAAACTGGCTGAAGAAGACC 14452 |||||| | || |||| |||||| |||||||||||||||||||||||||||| || ||| Sbjct 6811 GACGAGCAGGTACGCAACCCGGACCAGCGCGACAAGCTGGAAAACTGGCTGAGAAAAACC 6870 Query 14453 GTTCTGTCCCTCGGCTCGGCCGACGACACCATGGACGTGATCATCATCGGCACCATTCTT 14512 || ||| | || || || | || | | || ||| || ||||||||||| || Sbjct 6871 GTGCTGCCGCTGGGTGGTGCGGGCGCAAAACTCGATGTGGTCTATATCGGCACCATCCTG 6930 Query 14513 CACTACGACTCGGTCCTGTCGCGCCTGCTGAAAAACCCACTGTGGAAGC-GGCGCAAGTT 14571 || ||||||||||| | || ||| ||||| ||||| || ||| || ||||| || Sbjct 6931 CATTACGACTCGGTGTTATCACGCACCCTGAATAACCCGCTATGGCGGCAGGCGC-GCTT 6989 Query 14572 CAAGGCGATCATTGAATGGCCGCACCGCATGGACCTGTGGGAGAAGTGGGAAGAGCTTCT 14631 ||||| | | |||||| | || ||||||||| ||||| ||| | Sbjct 6990 TAAGGCCCTGCGCCAGTGGCCGGTGAACCTGTCGTTGTGGGAGAGCTGGGAGCAGCGCTT 7049 Query 14632 GCTCAACTCGGACGACGAAGGGGTCGCCGCGCTGGAGTTCTACCAGGAGCGCGCCG--CC 14689 || | || | | || || || |||| ||| || || | | | ||| || Sbjct 7050 GCGTA------ACCAGGGAGAGGATGCGGCGCAGGATTTTTATACG--TCACACCGTACC 7101 Query 14690 GCCATGGAGGACGGCGCGATCATCTGCTGGCCGGATGGGCAGCCCCTCTACAAGCTCATG 14749 | |||||||| |||||| ||| |||| | | ||| || || | || ||| Sbjct 7102 GAGATGGAGGAAGGCGCGGAAGTCTCCTGGTCCGCACGGCCGCTGCT---GACCCTGATG 7158 Query 14750 GTGAAACGTGCCCGCGATGGGCACTCGGCGTTCGACTCGGAACAGCAGAACGACCCTGTC 14809 | || ||||| || || ||| | | || || | || | ||||| | ||| ||| Sbjct 7159 CATATCCGCGCCCGTGACGGTCACGCCACCTTTGATGCCGAGTACCAGAATGCCCCGGTC 7218 Query 14810 CAAGGCGAAAACGCCCCCTTCGCC----GCCTGCATCACGTTCTGGGTCAACCGCCTGGC 14865 || ||| | || | || ||| |||||||| |||||||||||||| || Sbjct 7219 AGCGGTGAAGATGCGCTGTTTGCCCACTGCCTGCAT----TTCTGGGTCAACCGGCTTAA 7274 Query 14866 GCAATGGATGTTCTACGGCGCGTGTGACCCGTCCCTTGGCAAGCAAGGCTCCAGCCGCGA 14925 | ||| | |||||||| || || ||||| ||| |||||| || ||||||| || Sbjct 7275 CGAGTGGCTTTTCTACGGGGCCTGCGACCCCAGCCTCGGCAAGGCCGGGGCCAGCCGTGA 7334 Query 14926 CCC--CAGCGCCATCCTGGTGGGAGGGTTCAATCGGGAGACAGGCGTCCTGGACGTGGTC 14983 ||| |||||| | ||||| || || || ||||| | || ||||| ||||| ||||| Sbjct 7335 CCCGTCAGCGC--TGCTGGTCGGTGGCTTTAATCGCGCCACCGGCGTGCTGGATGTGGTG 7392 Query 14984 GAGGCCGCCATCCGCAAGCGCCTGCCGGACAAGATCATCGAAGACATCATCGCCATGCAG 15043 || || || |||||||| ||||||||| || ||| | || || || |||| Sbjct 7393 GAAGCGCAGATACGCAAGCGGCTGCCGGACGCCATTATCAGCAATATTATTGCTCTGCAA 7452 Query 15044 CGGGCCTATCACTGCCTGGTGTGGGGCGTTGAGGCGGTCCAGTTCCAGGAGTTCCTGCGC 15103 || || ||||| |||||||||||| |||||||||| ||||| ||||||||||||||| Sbjct 7453 AAGGAATACCACTGTCTGGTGTGGGGCATTGAGGCGGTGCAGTTTCAGGAGTTCCTGCGC 7512 Query 15104 ACCGAGCTGGTGAAGCGCTCGGCCAAGGCGGGCTGTCCAGTACCTGCCCGAGCGATCACA 15163 ||||||||| | |||||| |||| || ||| || || || || || || || | Sbjct 7513 ACCGAGCTGATTAAGCGCGCGGCACAGCTGGGTCACCCGGTGCCGGCGCGGGCTATTATC 7572 Query 15164 CCACACGCCGACAAGCTACTGCGCATCGAAAGCCTCCAGCCGCACATGGCCAACGGCCTA 15223 || || ||||||||||| |||| ||||| | ||| ||||| || |||| ||||| || Sbjct 7573 CCCCATGCCGACAAGCTGTTGCGTATCGAGACCCTGCAGCCCCATATGGAAAACGGGCTT 7632 Query 15224 ATCCGTCTGCATCCAAGCCAGACCGTTCTGGAGCAACAGCTGCGCCACTTCCCGGCCGCA 15283 ||||||||||| | ||||||||| ||| || |||||||||||||| || ||| Sbjct 7633 ATCCGTCTGCACGCCAGCCAGACCACACTGATACAGCAGCTGCGCCACTTTCCCCGCGCC 7692 Query 15284 GACCACGACGATGGCCCCGACGCCCTGCACATGCTCTGGATGCTCGC 15330 ||||| ||||| ||||| ||||| ||||| |||||||||| ||| || Sbjct 7693 GACCATGACGACGGCCCGGACGCGCTGCATATGCTCTGGACGCTGGC 7739 Score = 138 bits (152), Expect = 3e-28 Identities = 169/227 (74%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 17381 CCGGCTGGAAACGATCTACCAGACCAACATGCAGTCGGCCTACATGGCCGGGCGCTATGC 17440 ||||||||| || || | | ||||| | || || ||||| ||||||||||||||| | Sbjct 9714 CCGGCTGGAGACCATTTTTCGCACCAATACCCAATCTGCCTATATGGCCGGGCGCTAT-C 9772 Query 17441 CGCCGCATACGAGGCCAGGGAAACCCAC--CCCTACTGGATGTATGTGGCGGTCATGGAC 17498 || || | || | | | ||| | ||||||||| |||||||||||| |||||| Sbjct 9773 AGCGGC-TGCGCGAGAACGTCGACCAGCGGCCCTACTGGCAGTATGTGGCGGTGATGGAC 9831 Query 17499 AGCGTCACTCGGCCCAGCCATGCGGCGCTACATGGCAAGGTGTTCCGCTGGGACGACCCG 17558 ||| ||| || ||||||||||| ||||| |||||| ||||||||| | ||||| || Sbjct 9832 AGCCACACCCGCCCCAGCCATGCCGCGCTGCATGGCCGGGTGTTCCGTTATGACGATGCG 9891 Query 17559 ATCTGGCAGCACATCATGCCGCCGAATGGCTACAACTGCCGGTGCCG 17605 |||| | | | | |||||||| |||||||||||||| ||||| Sbjct 9892 GGCTGGGATACCCTGTTTCCGCCGAACGGCTACAACTGCCGCTGCCG 9938 Score = 125 bits (138), Expect = 2e-24 Identities = 299/442 (68%), Gaps = 19/442 (4%) Strand=Plus/Plus Query 16063 AGCGGGCTGTTCCGCGTGCTGGCCTGGCCGTACCTGTTCAAGCAC--TACTCCACGGCCG 16120 ||||| |||||||| || |||| ||| | |||||||||||| | | || | || | Sbjct 8436 AGCGGTCTGTTCCGGGTACTGGTGTGGACCTACCTGTTCAAGAATATTGCTGCCCGT--G 8493 Query 16121 ACCTGGCGGAAATGCTCGAAATCTACGGTCTGCCGATCCGGCTCGGGAAGTA-CCCGCCC 16179 ||||||||||| | || ||||||||||| ||||||| ||| | || | || ||| | Sbjct 8494 ACCTGGCGGAATTTCTGGAAATCTACGGCCTGCCGACGCGGGTGGGCACCTATTCCGACG 8553 Query 16180 GGCACGCC--CGACGAAGAGAAGGTAACCCTGCTGCGAGCGGTGACCGGCCTCGGCCATG 16237 || ||| || ||||| ||| | |||||| | ||| || || ||| || ||| Sbjct 8554 GG---GCCAGTGAAGAAGAAAAGAACATGCTGCTGTGGGCGCTGCGCGACCTGGGGCATA 8610 Query 16238 CCGCAGCGGGCATTATCCCCGAGAGTATGTCTATTGACTTCCAGGAAGCGTCGAAAGGCT 16297 ||| | |||||||||| ||| | | | || ||| || || | | || Sbjct 8611 ACGCCGGCGGCATTATCCACGAACGCACCGCGATCCGCTTTGAGTCCGCCGCCCAGGGGC 8670 Query 16298 CGGCCGAGCCGTTCATGGCCATGATGCGCTGGTGCGATGACTCGATGTCAAAGGCGATCC 16357 || ||| |||||| | ||||||| |||||||| | | ||| |||| || | Sbjct 8671 AGGTCGACCCGTTCCAGTATATGATGCAGTGGTGCGAAAGCACCCAGTCCAAGGTCATTC 8730 Query 16358 TGGGCGGCACGCTCACCAGCCAGACCAGCGAGTCGG--GCGGCGGCGCCTACGCCCTGGG 16415 |||||||||| || |||| |||| ||| | ||| || || || ||||||| || Sbjct 8731 TGGGCGGCACCCTGACCACCCAG----GCG-GACGGCAAGAGCAGCACCAACGCCCTAGG 8785 Query 16416 GCAGGTCCATAACGAGGTGCGCCATGACCT-ACTGGCTGCGGATGCCCGCCAGCTCGCCG 16474 | || |||||||| |||||||| || || || | | || ||||| ||||| |||| Sbjct 8786 CAACGTGCATAACGAAGTGCGCCACGAGCTGACCGCCAGC-GATGCGGTGCAGCTGGCCG 8844 Query 16475 CCACGCTGAGTCGCGATCTACT 16496 |||||||| || || || || Sbjct 8845 GCACGCTGACCCGTGACCTGCT 8866 >seq1892 Length=4253 Score = 122 bits (134), Expect = 2e-23 Identities = 178/252 (71%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 12753 ATGGCGCACCCGAAGGAAACCCGCGACGCCCTGCGCCGCGCCTACGTCCTCGACCGGCAG 12812 |||||||||||| |||||| ||||||| | ||||| || ||||| | ||| | | | Sbjct 391 ATGGCGCACCCGCAGGAAATCCGCGACACGCTGCGACGGGCCTATATTTTCGGGCAGATG 332 Query 12813 TCCCTGGAGGTCGCGGCCGCCATGTTCGGCGTCTCCTATGGCACCGCTCGCCGCTGGAAA 12872 ||||| ||| | || ||||| | ||||| | | || || || || ||||||||| Sbjct 331 TCCCTTGAGATTGCCGCCGCGCAATCGGGCGTTGCGTTCGGAACGGCACGGCGCTGGAAA 272 Query 12873 CAGCAAGCGGAAGCCGAGGGGGACGACTGGGACAAGGCGCAATCGGCGCAGTTGCTGGCC 12932 | | || | | || ||| || |||||||||||| || | ||||| || |||| Sbjct 271 AAAGACGCTCAGGACGCGGGTGATGACTGGGACAAGCAGCGGGCTGCGCATATGATGGCG 212 Query 12933 GGTGGTGGGCTGGAGGACGTGGCGCGCCAGGTGCTGGCCGGCCTGGTGACCCAGTTCCAG 12992 || ||||| |||||||| | | ||| ||| | |||| ||||| || |||| |||| Sbjct 211 GGCGGTGGTCTGGAGGATATTGGCCGCGCGGTATTAACCGGGCTGGTAACGCAGTACCAG 152 Query 12993 GCCACGATGGAA 13004 ||||| ||||| Sbjct 151 ACCACGCTGGAA 140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120227934592768