Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_005260.1 Length=233234 Score E Sequences producing significant alignments: (Bits) Value seq2333 378 1e-99 seq2351 185 1e-41 >seq2333 Length=8475 Score = 378 bits (418), Expect = 1e-99 Identities = 1111/1687 (66%), Gaps = 44/1687 (3%) Strand=Plus/Plus Query 37107 GTCATGATTACCACATTTAGGACATTCGTACCCTTTGGAAGTAGCAGTGAAT-TCACCG- 37164 ||| ||||| |||||||| || || | | |||||| || ||| | || |||||| Sbjct 3962 GTCGTGATTGCCACATTTCGGGCAGGTGAAGCCTTTGCTGGT-GCACTCAAACTCACCGG 4020 Query 37165 TGATAGCCACATTCAAAGCAAACATCAACAGGAGTATTTGTTCCGTAATACGGTGTGTTC 37224 ||| ||||||| ||| |||| |||| | || ||||| || |||||||| || Sbjct 4021 TGA-AGCCACACTCATAGCACTCATCGATCGGCGTATTGGTGCCGTAATAGGGCACACGG 4079 Query 37225 AGATAAGCATAATCCCAAACGTCTTCCAACGCTTTCAGATTATTTTTCATATTCGGATAT 37284 |||| |||||||| |||||||||| |||||| || |||| || || |||||||| Sbjct 4080 CTATAACTGTAATCCCAGACGTCTTCCAGCGCTTTAAGGTTATGTTGCAGGTTCGGATAC 4139 Query 37285 TCTCCGTATGAAATAAATCCACCTGAACTCAGAGGAATAAATTGCTTTTCAAAATCAATC 37344 || ||||| |||| || || || ||| || | || |||||| || || Sbjct 4140 TCGCCGTAGCAAATGAAGCCTCCGTTTGCCAGCGGTGGGTAGGGCAGTTCAAAGTCGATT 4199 Query 37345 TTGTCATAAGGATTGGTATTATGACGGACGTCGAGGTGGAAGCTGTTTGTGTAATAATCT 37404 || | |||||||| || | ||||| | |||||||||||| ||||| ||| || Sbjct 4200 TTCTGGTAAGGATTCACCTTCTTCTCCACGTCCAAGTGGAAGCTGTTGGTGTAGTAACCT 4259 Query 37405 TTATCGAACACTT----TATGA-GTCGGATAAAGTTCGCTATCAATTTTAGCGAAACGAT 37459 |||||| ||| || | | || || || || | || || ||||| | Sbjct 4260 TTATCGGTCACGCCTGGTACCACGCCGAATTCAG--CGGTGTCGATACGGCAAAAACGGT 4317 Query 37460 AGCACAGGCTTTCAGATGGAGTACCGTACAGGCTGAAAGCCAAACCAGTTTCAGCTTTCC 37519 |||||| ||||| || |||| ||| ||||||||| | | || ||||| |||||| Sbjct 4318 CACACAGGTTTTCACTCGGCGTACTGTAAAGGCTGAAACCGTAGCCGGTTTCTTCTTTCC 4377 Query 37520 AAGAATCGGTAATCTCTTTCATGTGTTTAAGAACAGAC-AGAGCGAACACTTGTTTG--- 37575 | |||||| |||||| | || ||| | |||| | | | || Sbjct 4378 ACTGATCGGTCGCGGCTTTCAGGCGTGC-------GACGATGGCGACCGCCTTTTCACGC 4430 Query 37576 -GTT--TGATTCTCCATGATGTGTTCATCGATACCATACATCATGATTTCACTCAGTTCA 37632 ||| | ||| || | | |||| | | | ||| ||| | | | || ||| Sbjct 4431 AGTTGCTCATTATCGAACACGTGTGTCTGGTTGCCAAACAGCGCGTTAATGGTC---TCA 4487 Query 37633 TGCAGGCCGATATAGCCGATACTGACAGAAGCGCGTCCATTTTCAAATGCTTTCATGATA 37692 || | || |||||||| | || || || || || |||| || | | ||| | Sbjct 4488 TGAACCCCAATATAGCCCAATGAGATCGATGCCCGACCGTTTTTGAA-GATCTCAGCAAC 4546 Query 37693 -TCGTCATCTGGATTCAGACGTACACCGCAGGCGCCTTCGACGTAAAGAATCGGAGCCAC 37751 | ||| || | ||||| |||||||| ||||||||||| | || || || ||||| || Sbjct 4547 GTTGTCGTCCGCTTTCAGGCGTACACCACAGGCGCCTTCCATATACAGGATTGGAGCGAC 4606 Query 37752 GCTTGCCTTAACGCCACGCAGACGATCAACACGTACCATTAGAGCTTGTTTAACTACTTC 37811 | || || ||| || ||| || | || ||| | |||| ||| | | || Sbjct 4607 ACGGGCTTTGACGTTTTCCAAACGCTCGATGCGCGTCATCAACGCTTTTTTCGCCAGTTG 4666 Query 37812 CATACGCTCTTCCAGAAGCTCCCAGAAACGCATATGATTGCCGTTTGCGTCGAGTGCGAT 37871 || ||| | |||| || | |||||||||| | || | ||| || || ||||| Sbjct 4667 CAGACGATTATCCAACAGGTTCCAGAAACGCTCTTCGTTATGTTCTGCTTCCAGCGCGAT 4726 Query 37872 ACGCGGCAGATTCAGAGTAACAACCCCTAGATTATTACGACCTTCGTGAACTTCATTGCC 37931 |||||||| || || | | ||||| || || || ||||| ||||| | | ||||| Sbjct 4727 GCGCGGCAGGTTGAGGCTGATTACCCCGAGGTTGTTGCGACCATCGTGGATCTGCTTGCC 4786 Query 37932 ATTTTCGTCTTCCCAACGATGCAAG-AAACTGCGGCATCCCATAGGGAACTTAAAGCTGC 37990 | ||| || | | ||| |||| ||||||||||| |||||||| |||||| || Sbjct 4787 CTCTTCCTCATAC--ACGC--CAAGGAAACTGCGGCAGCCCATAGGCGTCTTAAACGAGC 4842 Query 37991 CAGTTGTTTCAACAACTTTATCATAACTCAGAATATCTGGATACATACGCTTAGAAGCGC 38050 | || | ||| || | ||| ||| | |||||||| || ||||| ||||| |||| Sbjct 4843 CGGTAACCTTAACCACCTGATCGTAATTGAGAATATCCGGGTACATCCGCTTGCTGGCGC 4902 Query 38051 ACTCCAGTGCCAGTTGCTTGATACGATAAAGCGGGTCAGTTGGCTTCAAGTTGTGTCCGT 38110 | |||||||||||||||||||| ||| ||| || | | ||| ||| |||| Sbjct 4903 AATCCAGTGCCAGTTGCTTGATGTCATAGTTCGGATCGGCAGCCTTGTGATTGACACCGT 4962 Query 38111 CTTTCAGAGCAAACACCAGTTTCGGGAACACCGGAGTGATACCCTCTTTGCCAAGTCCAG 38170 | | ||| ||||||||||| |||||||||| || ||| | |||||| || || | Sbjct 4963 CGCGGATAGCGAACACCAGTTTGGGGAACACCGCGGTTTTACGGTTTTTGCCCAGACCGG 5022 Query 38171 CCAGTCGAACTTTCAAGATCGCTTCCTGAATCAGTTCAGCTTCCCAGCTTTCACCCAGAC 38230 | | || || ||| | || ||||||||| | |||||| | || |||| Sbjct 5023 CAATGCGGTTGCGCAGGATGGATTGCTGAATCAGGCGCGATTCCCAACGGGTGCCGAGAC 5082 Query 38231 CAAAGCCGAATGT-ACAGAAGGGAGTTTGACCGTTCGCGGAGTGAAGAGTGTTCACCTCG 38289 | || || || || ||| || || || ||||| || |||| ||| || || || || || Sbjct 5083 CGAAACCAAAGGTGACA-AACGGTGTCTGACCATTGGCGGTGTGCAGCGTATTTACTTCA 5141 Query 38290 TATTCGAGTCCCTGCATTGCATCATA-CACAGCTTTGTGAGTCTTTGCAATAGCGTATTC 38348 ||||| || ||| | || || || ||| |||| | || | | || || | Sbjct 5142 TATTCCAGCGACTGGAAGGCGTCGTAGCAC-TCTTTTTCGGTACGAGACAGTGCATAGGC 5200 Query 38349 TTTCGCATCTGGAATTTTCCAATAACGGGCTTCGTCCAAATGCTTTTCATGAGTCATCTT 38408 | |||||| ||||| | ||| | | || ||| ||||||| | | | | Sbjct 5201 GTCCGCATCGGGAATGTGCCACTCATCAGCAGTTTCCCGGTGCTTTTTAAGGCTGGCGGT 5260 Query 38409 AACATACGGTGCCAGCACTTCGTCAATACGATTAATTGTGTTGCCGCCGTAAATGTGACT 38468 || |||||||||| | ||| || ||||| ||||| ||| |||||||||| ||||| || Sbjct 5261 GACGAACGGTGCCAGAATTTCATCGATACGGTTAATGGTGGTGCCGCCGTAGATGTGGCT 5320 Query 38469 TGCTACTTGCGCAATAATCTGAGCGACTACGGCAGCAGCGGTAGAAATGCTTTTCGGAGT 38528 ||| || ||||| || || || || || || | ||||| || ||| ||| || | Sbjct 5321 TGCCACCTGCGCGATGATTTGGGCCGTCACTGCTGTCGCGGTTGAGATGGATTTTGGTGG 5380 Query 38529 TTCGATCTGTGCATTTCCCATACGGAA-CCCGCGATCTAACATGCCTTTGACATCTATCA 38587 || |||| || || ||||| ||| ||| | || |||||||||| | || |||| Sbjct 5381 CTCAATCTCCGCGTTACCCATCTTGAACCCCTTGGTC-AACATGCCTTCAAGGTCGATCA 5439 Query 38588 ACATGCAGTTAAACATTGGGAAGAATGGAGAATAGTCAAGATCATGGAAGTGCAGCCAGC 38647 ||| ||||| ||||| |||||||| || || ||||| ||||| ||| |||| | | Sbjct 5440 GCATACAGTTGAACATCGGGAAGAACGGGGAGTAGTCCAGATCGTGGTAGTGAATTTCAC 5499 Query 38648 CTTTTTCGTGTGCTTGCATAACTTCAACAGGAAG---ATAATGCTTTGCAAAGTGCTTAC 38704 | ||| || || ||| || || || || || ||||| || ||||||| Sbjct 5500 CGCGTTCATGAGCAAGCACCACGTCGCGCGGCAGGATATGTTGCTTGGCGTAGTGCTTGG 5559 Query 38705 TAACAATACCAGCAACCAGATCGCGTTGAGTAGGGATTACTTTAGCGTCTTTGTTAGCAT 38764 ||| ||||| || | ||| ||||| || ||||||||||||||| ||||||||| || | Sbjct 5560 CAACGATACCGGCCAGCAGGTCGCGCTGGGTAGGGATTACTTTACTGTCTTTGTTGGCGT 5619 Query 38765 TCTCATT 38771 |||| || Sbjct 5620 TCTCGTT 5626 >seq2351 Length=10305 Score = 185 bits (204), Expect = 1e-41 Identities = 284/405 (70%), Gaps = 0/405 (0%) Strand=Plus/Minus Query 43621 CAGCTTGTTGATTTGGATACCGTAGTCAAGCTGGCGAATTCGATTTTCTTCCACGCCCTT 43680 ||||||||| | || | ||||| || || || || | || || |||||||||| Sbjct 2993 CAGCTTGTTCAACTGCACGCCGTAATCGAGGTGACGCACGCGGTTGCCTTCCACGCCACG 2934 Query 43681 GTTGTTTTTCAGAACAAGGATTTTTTCAACTTCAAGATGCCACATTGGATAGTAAAGAGT 43740 |||||| ||||| || || | |||| ||||| |||||||||| || || | | || Sbjct 2933 GTTGTTCTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACAGCGGGTAAAACAACGT 2874 Query 43741 AGCAGCGCCACCGCGTACACCACCCTGTGAGCAACTTTTTACCGCAGTCTGGAAATATTT 43800 || || || ||||| ||||| ||||||||||| ||| || || |||||||||| ||| Sbjct 2873 TGCCGCTCCGCCGCGCACACCGCCCTGTGAGCAGGATTTCACTGCGGTCTGGAAATGTTT 2814 Query 43801 CCAGAACGGAATAATACCAGTGTGGCGAACTTCACCACTTCGAATGCGAGAACCTTCGGC 43860 |||| |||||| ||||| ||| ||||||||| ||||| | ||| || Sbjct 2813 ATAGAAAGGAATACAGCCAGTATGGAATGCTTCACCACCGCGAATCGGGCTACCCAGCGC 2754 Query 43861 ACGAATAGCGCCACCGTTGATACCGATACCAGCGCGTTTGCTAATATAGTCAACGATTGA 43920 ||||||| || |||| || |||||||| || || | || || | ||||| | Sbjct 2753 ACGAATACGACCGGCGTTAATGCCGATACCGGCACGCTGTGAAACGTATTTCACGATAGC 2694 Query 43921 ACTTGCGGTAGCGTTAATGCTATCGAGTTCGTCGCCGCTTTCGATCTTCACGCATGAGCT 43980 ||| | ||| ||||||||| ||| || |||||||| || ||| |||||| ||||| Sbjct 2693 ACTGGAGGTGGCGTTAATGGAATCCAGGCTGTCGCCGCACTCAATCAACACGCAGGAGCT 2634 Query 43981 AAACTGGCGAGTCGGGGTTCGAACACCAGCAAGAATTGGCGTCGG 44025 ||||| || || ||||| || || || | | || ||||| || Sbjct 2633 GAACTGACGGGTTGGGGTACGCACGCCGGACATGATCGGCGTTGG 2589 Score = 84.2 bits (92), Expect = 3e-11 Identities = 191/280 (68%), Gaps = 8/280 (3%) Strand=Plus/Minus Query 41063 ATTCCGCATGATGTGGGTATAAGAACGGCTATGAATTGTCTCACTGAAACT--CCATGTG 41120 ||| || ||||| |||||||| |||||| ||| || || || ||||| | ||| || Sbjct 4726 ATTGCGGATGATATGGGTATAGGAACGGGAATGGATGGTTTC--TGAAAATGCCCAGGTT 4669 Query 41121 GTGATCCAAGTTTCAAGCGC-GACATCAGATACGATTGGCAAGAATACCAAGTTAGGTGC 41179 ||||| ||||| | | | | || || | | || || ||| | | ||| || Sbjct 4668 TCTATCCAGGTTTCCAACTCTGGGATG-GAGATCAGCGGTAACAATGCGACGTTCGGGCT 4610 Query 41180 GCGACCTTGTACCGAGTCAAGCAGACTTTGATATTTCAAGTTT-TGAGTGAAAACATGTT 41238 ||| ||||| | ||||| ||||| |||| ||||||| || ||| |||| | || | Sbjct 4609 GCGTCCTTGAATGGAGTCCAGCAGTGTTTGGTATTTCAGATTGCTGA-TGAAGATGTGCT 4551 Query 41239 GTTCGGCTTCACTCAGTTGATTATAGTCGATTGCATCCTTAGACAAATCCACTTCTTCGG 41298 ||| ||| || | ||||||||| ||| ||||| |||||| ||||| | Sbjct 4550 TTTCATGTTCTGGTAGCGCCTGATAGTCGATGCGATCGCGAGACACATCCACCTCTTCTG 4491 Query 41299 GACGCCAGAAAAATGAAAGTTGCTTTTCTGTAAGCTTATC 41338 ||||||||||||| || || || || ||| | ||||| || Sbjct 4490 GACGCCAGAAAAAGGAGAGCTGTTTCTCTATCAGCTTCTC 4451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 746183787448320