Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_005262.3 Length=63882 Score E Sequences producing significant alignments: (Bits) Value seq2705 168 3e-37 seq3810 158 5e-34 seq3282 93.3 2e-14 >seq2705 Length=2265 Score = 168 bits (186), Expect = 3e-37 Identities = 158/201 (79%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 13989 CAGGGGGCCGGTGGGCGAACGCTGGTTGTGTGTATGGACCCCAGCGTGCAGTCGCTTGGC 14048 ||||||| ||| || |||| |||||||||| |||||| || | || | |||| Sbjct 82 CAGGGGGAAAATGGACGCACGCAGGTTGTGTGTCTGGACCACAAAGGATTATCTCCTGGC 141 Query 14049 GGACCCTGGACGCCCAATATTTCGGAGTGGCCCAACGCCGCCGCCGTGTGTTCGTTGTCG 14108 | ||| || || |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 142 GCGTCCTTGATGCTCAATTTTTCGGAGTGGCCCAACGCCGCCGCCGTGTGTTCGTTGTCG 201 Query 14109 CAAGTGGTCGAGACTGGTTCGATCCCACACCGGTACTTTTTGAGTGGGATGGCGTGCGCC 14168 ||||| |||| | ||||||||| || |||||||||||||| | |||| |||| Sbjct 202 CAAGTTCTCGAAAAGACTTCGATCCCGCAGCGGTACTTTTTGAGCTCAACAGCGTTCGCC 261 Query 14169 GGGATTGTCCGCCGCGCCGAG 14189 ||||| |||||||||||||| Sbjct 262 GGGATACTCCGCCGCGCCGAG 282 >seq3810 Length=2504 Score = 158 bits (174), Expect = 5e-34 Identities = 302/436 (69%), Gaps = 8/436 (2%) Strand=Plus/Minus Query 13530 GCGGCATGAGATACGGAAGCGTGTGCAGCGGCATCGAGGCCGCGACCGTTGCTTGGCATC 13589 || ||||||||||||| || ||||| || || || ||||| | ||| || ||| Sbjct 470 GCAGCATGAGATACGGTTCTGTTTGCAGTGGTATTGAAGCCGCCAGCGTCGCATGGGGAT 411 Query 13590 CGCTCGGCTGGAAGCCGGCGTGGTTCGCTGAGATCGAGAAATTCCCTAGCGCCGTGCTGG 13649 |||| || ||| |||| || ||||| |||||||| || || ||| || ||||||| Sbjct 410 CGCTGGGATGGCAGCCAGCATGGTTTGCTGAGATTGAAGCGTTTCCTTCTGCGGTGCTGG 351 Query 13650 CGCATCATTACCCCGATGTTCCTAACCTTGGAGACATGACGAAGATCACGCGC-GCGGTG 13708 | ||||| | | |||| | ||||| || |||||||| || || | ||| || ||| Sbjct 350 CCCATCACTGGTCGCATGTGGCGAACCTCGGCGACATGACAAAAATTGC-CGCAGCAGTG 292 Query 13709 CTGGCGCGTGAGGTCGAAGTGCCTGACGTGCTGGTCGGTGGCACGCCGTGCCAGGCATTC 13768 | | |||| |||| || || |||||||| || || |||||||| ||||| ||| Sbjct 291 CGCACTGGTGAAACTGAAGCCCCCGATGTGCTGGTGGGCGGTACGCCGTGTCAGGCTTTC 232 Query 13769 AGCCTCGCGGGTCTGCGTGAATCCCTCTCGGATGAGCGCGGGAATCTTACTTTGAAATTC 13828 || | || |||||||| | ||| || ||||||||| | | || | | | Sbjct 231 AGTATTGCCGGTCTGCGCAATGGCCTGGACGACGAGCGCGGGCAGTTAACCCTTTCTTAC 172 Query 13829 GTTGAGTTGATCG-ATGCAATTGAC--CATGTTCGGCGACTCGATGGCGCAGCACCGGCC 13885 || || || | || ||||||| ||| || | |||| || || | || | || Sbjct 171 GTGGAATT-AGCGAATGCAATCGACGACAAACGCCGCGA-GCG-CGGAGAAGAAGAAGCG 115 Query 13886 GTCGTCGTCTGGGAAAACGTCCCCGGCGTCCTCTCGACAAAAGACAATGCGTTCGGGTGC 13945 || ||||||||||||||||||| || |||||| | |||||||| || ||||| ||| Sbjct 114 ATCATCGTCTGGGAAAACGTCCCAGGTGTCCTCAGCAGCAAAGACAACGCATTCGGCTGC 55 Query 13946 TTTCTGGCTGGGCTTG 13961 |||||||| || |||| Sbjct 54 TTTCTGGCAGGACTTG 39 >seq3282 Length=7904 Score = 93.3 bits (102), Expect = 2e-14 Identities = 194/289 (67%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 10147 GCGTAAACAAGGTAATTTTGGTTGGAAACTTAGGGGCCGATCCTGAAGTCCGTTACCTGC 10206 |||| || || || ||| | || || || | ||| || || ||||||||||| |||| Sbjct 7268 GCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGGCAAGACCCGGAAGTCCGTTATCTGC 7327 Query 10207 CGAGCGGCGACGCGGTTGCGAACATCCGTCTCGCGACGACCGATCGATACAAGGACAAGG 10266 ||| ||| | || ||||| ||| | ||| || ||| | ||| | |||||| Sbjct 7328 CGAACGGTGGTGCCGTTGCTAACCTGACTCTGGCCACGTCAGATACCTGGCGCGACAAGC 7387 Query 10267 CGAGCGGCGACATCAAGGAGGCGACTGAATGGCACCGCGTCTCGTTCTTCGGTCGGCTGG 10326 || ||| || || ||| || ||||||||||||||| || | | ||| ||||| Sbjct 7388 AGACCGGTGAGCAGAAAGAGCGCACAGAATGGCACCGCGTCACGCTGTACGGAAAGCTGG 7447 Query 10327 CTGAGATCGTCGACGAGCACCTGCGCAAGGGCGCATCTGTCTACATCGAGGGGCGCATCA 10386 |||| | | | || |||||||||| ||| || || || | || || | | Sbjct 7448 CTGAAGTGGCTGGAGAATACCTGCGCAAAGGCTCACAGGTGTATGTTGAAGGTCAACTGC 7507 Query 10387 AGACGCGGAAGTGGCAGGATCAATCCGGCCAGGATCGTTACACGACCGA 10435 ||||| || ||||||||||| ||| ||||||||||| || || || Sbjct 7508 GCACGCGTAAATGGCAGGATCAGAGCGGGCAGGATCGTTATACCACGGA 7556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 204287720168064