Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_005284.1 Length=54865 Score E Sequences producing significant alignments: (Bits) Value seq2694 269 9e-68 seq2969 237 6e-58 seq2874 143 9e-30 seq3879 80.6 9e-11 >seq2694 Length=15341 Score = 269 bits (298), Expect = 9e-68 Identities = 393/548 (72%), Gaps = 8/548 (1%) Strand=Plus/Minus Query 22197 CCCTGGATCGGCGGCAAGCGTCGACTCGCTGACCACATCATCCCGCGCTTTCCGAAGCAC 22256 |||||||| ||||| || || || || || | || || | |||||||| || | ||| Sbjct 2679 CCCTGGATAGGCGGTAAACGGCGGCTGGCAAAACAGATTTTACCGCGCTTCCCTACGCAT 2620 Query 22257 GACTGTTACGTCGAGGTGTTCGCGGGCGGGGCGGCGCTGTACTTCATGCGACCGCCAGCC 22316 ||| ||||| ||| || |||| ||||||||| | || ||| | || | Sbjct 2619 ACCTGCTACGTGGAGCCATTTTGTGGCGCGGCGGCGCTCTTTTTTATGAAGTCACCGAGC 2560 Query 22317 AGGGTCGAGGTGATCAACGATATCAACGGCGAGCTGGTGAACCTGTATCGCGTCGTTCAG 22376 | | |||||||| ||||||||||||||||||||||| || || ||||| || | | Sbjct 2559 AAAGCGGAGGTGATTAACGATATCAACGGCGAGCTGGTCAATCTTTATCGGGTGTTGAAA 2500 Query 22377 CACCATCTCGAAGAGTTCGTGCGTCAGTTCAAATGGGCGCTGACGAGCCGGCAGGTGTTC 22436 |||||||| |||||||| |||| ||||| |||||||||||| |||||| | ||| Sbjct 2499 CACCATCTGGAAGAGTTTATGCGCCAGTTTAAATGGGCGCTGGTCAGCCGGGCGATGTAT 2440 Query 22437 GAGTGGCTGAAGCAT-ACGGTCCCGGAAACCCTCACCGACATCCAGCGTGCGGCACGCTT 22495 | ||| | || ||| ||| | || ||||| ||||| |||||||| || ||||| || Sbjct 2439 CAATGGTTAAA-CATCACGCCGACCGAGACCCTAACCGATATCCAGCGCGCAGCACGTTT 2381 Query 22496 CTACTACCTGCAAAAA-AGTTGCTTTGGCGGGAAGCTTGAAGGGCAGACGTTCGGAACGG 22554 ||| |||||||||||| || | || ||||| ||| | | | ||| || || || | Sbjct 2380 CTATTACCTGCAAAAACAGGCG-TTCGGCGGCAAGGTGGCGGAGCACACCTTTGGCGTGA 2322 Query 22555 CGACGACTACGGTGCCGGGCCTGAACCTGCTGCGCATCGAAGAAGAGCTATCGGCGGCGC 22614 | || || |||| |||| ||||||||||||||||||| ||||||||| ||||| |||| Sbjct 2321 CCACTACAACGGGGCCGCGCCTGAACCTGCTGCGCATGGAAGAAGAGTTATCGCTCGCGC 2262 Query 22615 ACATTCG--TCTCGCGAATGCGTACATCGAGCGGCTCGATTGGGCGACCTGCATCGATCG 22672 | | || | || || | | ||| || | || |||||||| | ||| || | || Sbjct 2261 ATCTGCGATTATCACGCA--CCACCATTGAACACCTGGATTGGGCCAGCTGTATTGCCCG 2204 Query 22673 TTACGATCGGCCGCACACGCTGTTCTACCTTGATCCGCCGTACTTCGAGACTGAAGGGTA 22732 ||| || || |||||||||||||| ||| || || ||||||| | || || || || Sbjct 2203 TTATGACCGTCCGCACACGCTGTTTTACTGCGACCCACCGTACTGGGGAACCGAGGGCTA 2144 Query 22733 CGGCGTCG 22740 ||||||| Sbjct 2143 TGGCGTCG 2136 >seq2969 Length=1929 Score = 237 bits (262), Expect = 6e-58 Identities = 387/548 (71%), Gaps = 12/548 (2%) Strand=Plus/Plus Query 22197 CCCTGGATCGGCGGCAAGCGTCGACTCGCTGACCACATCATCCCGCGCTTTCCGAAGCAC 22256 |||||||| ||||| || || || || || | || || | |||| ||| ||| ||| Sbjct 197 CCCTGGATAGGCGGTAAACGGCGGCTGGCAAAACAGATTTTACCGCACTTCCCGGCGCAT 256 Query 22257 GACTGTTACGTCGAGGTGTTCGCGGGCGGGGCGGCGCTGTACTTCATGC-GACCGCCAGC 22315 ||| ||||| || ||| |||| ||||||||| | ||| ||| | | ||||| Sbjct 257 ATCTGCTACGTGGAACCGTTTTGTGGCGCGGCGGCGCTCTTCTTTATGAAGTCACCCAGC 316 Query 22316 CAGGGTCGAGGTGATCAACGATATCAACGGCGAGCTGGTGAACCTGTATCGCGTCGTTCA 22375 ||| || ||||| ||||||||||||||||| ||||| || || ||||| || | | Sbjct 317 AAGGCG-GAAGTGATTAACGATATCAACGGCGAACTGGTCAATCTCTATCGGGTGCTGAA 375 Query 22376 GCACCATCTCGAAGAGTTCGTGCGTCAGTTCAAATGGGCGCTGACGAGCCGGCAGGTGTT 22435 |||||||| ||||| || | || ||||| |||||||||||| ||| || | ||| Sbjct 376 ACACCATCTGGAAGAATTTATACGCCAGTTTAAATGGGCGCTGGTCAGCAGGGCGATGTA 435 Query 22436 CGAGTGGCTG--AAGCATACGGTCCCGGAAACCCTCACCGACATCCAGCGTGCGGCACGC 22493 | ||| || || || | | || || ||| | ||||| |||||||| ||||| || Sbjct 436 TCAATGGTTGAAAATCACCCCGACC--GAGACCTTAACCGATATCCAGCGCGCGGCCCGT 493 Query 22494 TTCTACTACCTGCAAAAA-AGTTGCTTTGGCGGGAAGCTTGAAGGGCAGACGTTCGGAAC 22552 ||||| |||||||||||| || | || ||||| ||| | | | ||| || || || Sbjct 494 TTCTATTACCTGCAAAAACAGGCG-TTCGGCGGCAAGGTGGCCGAGCACACCTTTGGCGT 552 Query 22553 GGCGACGACTACGGTGCCGGGCCTGAACCTGCTGCGCATCGAAGAAGAGCTATCGGCGGC 22612 | | || || || | ||| ||||||||||| ||||||| |||||||| || ||| ||| Sbjct 553 GACCACCACCACTGCGCCACGCCTGAACCTGTTGCGCATGGAAGAAGAACTGTCGTTGGC 612 Query 22613 GCACATTCG--TCTCGCGAATGCGTACATCGAGCGGCTCGATTGGGCGACCTGCATCGAT 22670 || | || | || || | | | ||| || | || || ||||| | |||||| | Sbjct 613 TCATCTGCGACTATCACGCA--CCTCCATTGAACAACTTGACTGGGCAAGCTGCATTGCC 670 Query 22671 CGTTACGATCGGCCGCACACGCTGTTCTACCTTGATCCGCCGTACTTCGAGACTGAAGGG 22730 || || || || |||||||||||||||||| || |||||||| | | ||| ||||| Sbjct 671 CGCTATGACCGTCCGCACACGCTGTTCTACTGCGACCCGCCGTATTGGGGGACGGAAGGT 730 Query 22731 TACGGCGT 22738 || || || Sbjct 731 TATGGGGT 738 >seq2874 Length=8148 Score = 143 bits (158), Expect = 9e-30 Identities = 365/550 (66%), Gaps = 4/550 (1%) Strand=Plus/Plus Query 22197 CCCTGGATCGGCGGCAAGCGTCGACTCGCTGACCACATCATCCCGCGCTTTCCGAAGCAC 22256 || ||| | || || |||||||| || ||| | | || | || ||||||| ||||| Sbjct 2435 CCTTGGGTGGGAGGGAAGCGTCGGCTGGCTAAACGTATTCTATCGTGCTTTCCTGAGCAC 2494 Query 22257 GACTGTTACGTCGAGGTGTTCGCGGGCGGGGCGGCGCTGTACTTCATGCGACCG-CCAGC 22315 | || ||||| || ||| || || || ||||||| |||| || | ||| | Sbjct 2495 AAATGCTACGTTGAACCATTCTGTGGGGGAGCTGCGCTGTTTTTCA-GCAAGGAACCATC 2553 Query 22316 CAGGGTCGAGGTGATCAACGATATCAACGGCGAGCTGGTGAACCTGTATCGCGTCGTTCA 22375 | | ||| ||| | ||||||||||| ||||| || | ||||| |||| || ||| | Sbjct 2554 TACAGCCGAAGTGCTGAACGATATCAATGGCGATTTGATAAACCTCTATCAGGTGGTTAA 2613 Query 22376 GCACCATCTCGAAGAGTTCGTGCGTCAGTTCAAATGGGCGCTGACGAGCCGGCAGGTGTT 22435 |||||| | || || || || ||||| ||||| ||||| ||| || ||||| |||| Sbjct 2614 ACACCATTTGGAGGAATTTGTACGTCAATTCAAGTGGGCCTTGAGCAGTAGGCAGCTGTT 2673 Query 22436 CGAGTGGCTGAAGCATACGGTCCCGGAAACCCTCACCGACATCCAGCGTGCGGCACGCTT 22495 || ||||| || | || ||| ||| || || || |||||||| || || || || Sbjct 2674 TGATTGGCTAAAAGAAACACCTCCGCAAATGCTAACTGATATCCAGCGAGCCGCCCGGTT 2733 Query 22496 CTACTACCTGCAAAAAAGTTGCTTTGGCGGGAAGCTTGAAGGGCAGACGTTCGGAACGGC 22555 ||||| || || | | ||||| || || | || || | || || || | Sbjct 2734 TTACTATCTTCAGCAGCTTACATTTGGTGGAAAAGTGAGCGGACAAAGCTTTGGTACCTC 2793 Query 22556 GACGACTACGGTGCCGGGC-CTGAACCTGCTGCGCATCGAAGAAGAGCTATCGGCGGCGC 22614 | | || | | ||| ||||||| || | ||||||||| ||||||| ||| | Sbjct 2794 CGC-TGTGCGATCACAGGCATTGAACCTCCTAAGAATCGAAGAACAGCTATCACAGGCCC 2852 Query 22615 ACATTCGTCTCGCGAATGCGTACATCGAGCGGCTCGATTGGGCGACCTGCATCGATCGTT 22674 || | ||| | | | || ||| |||| || | ||| | | || || || | Sbjct 2853 ACCTGCGTTTATCTGAGGCAACCATAGAGCATCTTGGGTGGCAGGCTTGTATTGAAAAAT 2912 Query 22675 ACGATCGGCCGCACACGCTGTTCTACCTTGATCCGCCGTACTTCGAGACTGAAGGGTACG 22734 | ||| |||| ||||| | ||||||||||||||||| |||| || ||| |||| || | Sbjct 2913 ATGATAGGCCACACACATTATTCTACCTTGATCCGCCTTACTGGGAAACTCAAGGCTATG 2972 Query 22735 GCGTCGCATT 22744 ||| || || Sbjct 2973 CCGTGGCGTT 2982 >seq3879 Length=3069 Score = 80.6 bits (88), Expect = 9e-11 Identities = 47/49 (96%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 3097 TCGAGGAAATCTGCCGCTGGTATCGCGTTCCGCCGTTTATGGTCGGCCA 3145 |||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 952 TCGAAGAAATCTGCCGCTGGTATCGCGTTCCGCCGTTTATGGTCGGTCA 1000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175438132965632