Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_005340.1 Length=30636 Score E Sequences producing significant alignments: (Bits) Value seq3842 385 9e-103 >seq3842 Length=22882 Score = 385 bits (426), Expect = 9e-103 Identities = 757/1109 (68%), Gaps = 34/1109 (3%) Strand=Plus/Plus Query 27552 TGACTGGCGTGAACAAAAGCGCCGCACTCGTGAATTTCTCAAAGGTCTGGATCTCGAAGA 27611 |||||||| || || ||| ||||| || | | |||| | ||||||| ||||| Sbjct 6306 TGACTGGCACGAGCAGCGGCGGCGCACCAACGAGTGGCGCAAAAGCATGGATCTGGAAGA 6365 Query 27612 CGAAGACGGCAACCGTATCAGCCTGATTGAAAAATTTGACGGCTCGGTC--GCTAACCCT 27669 |||||| |||||||| |||| |||||| || | || | || | ||| || || || Sbjct 6366 CGAAGAGGGCAACCGCATCAACCTGATGGACGGCTATG-CTGC-CAGTCAGGCCAATCCC 6423 Query 27670 GCGATACGCCGCTGCGAGCTGATGACCCGCATCCGTGGGTTTGAAAATATCTGCAATGAA 27729 || || || || || |||||| ||||| || |||| |||| ||||| ||||| Sbjct 6424 GCCATCCGGCGTACTGAACTGATGGTACGCATTCGGGGGTATGAAGATATCGCCAATGCT 6483 Query 27730 CTCGGATACGTCGGGGAGTTTTACACCCTGACCGCACCGTCTAAATATCATGCCACGACT 27789 | || || || || || ||| ||| | ||||| || || | ||||| |||| || Sbjct 6484 CAGGGTTATGTTGGCGAATTTGTGACCATCACCGCCCCCTCAAGCTATCACTCCAC--CT 6541 Query 27790 ---AAAGCGGGATACCGTAACAGCAAATGGAACGGCGCCAGCCCGTCGGACACGCAGAAC 27846 |||||||| | |||| | ||||||||||| ||| ||||| ||| || |||| | Sbjct 6542 TGGAAAGCGGGCGCAC-TAACCGGAAATGGAACGGTGCCTGCCCGAAGGAGACCCAGAGC 6600 Query 27847 TACCTAACCGGCCTTTGGGCGCGCATTCGTGCCAAGCTACATCGGGAAGAAATTCGCATT 27906 || || | | | ||||| ||| || ||||| || || ||| | ||| || Sbjct 6601 TATCTCAATGATGTATGGGCCCGCGCCCGCGCCAAATGCCACCGCCAAGGGCTGCGCGTT 6660 Query 27907 TTCGGCATACGTGTTGCCGAGCCTCATCACGACGGAACGCCGCATTGGCACATGCTTATG 27966 || || || || ||||| ||||| || || ||||| ||||| ||| || || | || Sbjct 6661 TTTGGTATGCGGGTTGCTGAGCCACACCATGACGGCACGCCACATGCCCATTTGTTGGTG 6720 Query 27967 TTCATGTTGCCAGAAGACGTCGAGCGCGTGCGCCTCATCATCCGCGATTATGCATGGGAG 28026 || || ||||| | || ||| | || ||| | ||||| ||||| || | Sbjct 6721 TTTGCCCGCCCGGAAGAGATGGATCGCATTCGGGACATTCTGCGCGAGTATGCCATGGCG 6780 Query 28027 GAAGACCGCCACGAACTTAAAAGTGATAAGGCTAAAAAAGCCCGCTTTCATGCTGAGGCT 28086 |||||| || | || | |||| || ||| ||||| ||| | || | || Sbjct 6781 GAAGACGGCGAGGAGTTACGGAGTGCCGCCGCGGCAAACGCCCGGTTTGACGCAAAAGCC 6840 Query 28087 ATCGACCCGGAGAAAGGCAGTGCTACCGGCTATGTCGCGAAATACATTTCTAAAAACATC 28146 ||||| || || |||||||| || ||||| |||||||||||||||||||| ||||| || Sbjct 6841 ATCGATCCAGAAAAAGGCAGCGCCACCGGGTATGTCGCGAAATACATTTCGAAAAATATT 6900 Query 28147 GACGGTTATGCTCTCGATGGTGAAACCGATGACGAAAGCGGTGAGCTGCTGAAAGAGACA 28206 || || ||||| || || ||||||||||| ||||||||||| ||| | | || || || Sbjct 6901 GATGGCTATGCCCTAGACGGTGAAACCGACGACGAAAGCGGCAAGCCGTTAAAGGAT-CA 6959 Query 28207 GCCCCCGC-TGTATCAGCATGGGCGGCGCGCTGGCACATCCGTCAGTTTCAGTTTATCGG 28265 | | || || | || |||||| ||| |||| ||| || ||||||||||||||||| Sbjct 6960 CGCGCAGCGTGCTACCGCCTGGGCGTCGCTCTGGGGCATTCGCCAGTTTCAGTTTATCGG 7019 Query 28266 CGGTGCGCCGGTGACGGTCTACCGTGAATTGCGTCGTCTCGCTGATACCGAGGCCGCGCA 28325 | | | ||||||||||| | || || ||||| || || ||| | || |||| | Sbjct 7020 CAGCGTTCCGGTGACGGTGTGGCGGGAGTTGCGCCGGCTGAATGACAGTGAAACCGCCCG 7079 Query 28326 CGGTCTGAGCGTTGAGTTTGCCGCCGTCCATGATGCCGCTGA--CGCCGGTGACTGGGCT 28383 ||| |||||||| |||||||||||| || || || || | |||||| ||||||| Sbjct 7080 CGGCCTGAGCGTGGAGTTTGCCGCCTGTCACGAGGCGGCCAATGCGCCGG--ACTGGGCC 7137 Query 28384 GGTTACGTTAATGCGCAGGGTGGGCCGTTTGTCCGTCGCGATGATTTGCAGGTGCGCACA 28443 | || || ||||| ||||| ||||| | ||| || ||||||||| ||||||||| Sbjct 7138 GAGTATGTCAATGCCCAGGGCGGGCCACTGGTCAAACGTGATGATTTGGCGGTGCGCACC 7197 Query 28444 CTGTATGAACCGCGCACCGAGTTT---AATCAGTATGGTGAGGAAACCGTCTGCATTCGT 28500 |||| | || || ||| | |||||||| ||||| |||| | | || ||| Sbjct 7198 TGGTATCAGCCA---ACAGAGGTACTGAATCAGTACGGTGAAGAAATTCTGAGTATCCGT 7254 Query 28501 GGCGTATACGATTCCGCTATTGGTGCTGGCACTCCGATTTTAACCCGGCTAACGCAGTGG 28560 || | | ||| | | |||| | || | ||||| | |||||| | | ||||||| Sbjct 7255 GGGCTGTTTGATACGGTGGTTGGCGAGGGTTCGCCGATCCTGACCCGGTTGAAGCAGTGG 7314 Query 28561 AAAATTGTGCCGAAGCGTGCCGTTGATTTGGCCGTTGACGTTAAGGGCGCTCCTGCGCCC 28620 || |||||||||||| ||||||||||| || | ||| |||| Sbjct 7315 AAGATTGTGCCGAAG------------TTGGCCGTTGATGTGAGCAACGCGGATGCGTTG 7362 Query 28621 TCTCGGAGTTCTGTCAATAACTGTACGGG 28649 |||||| | |||||||||||||||||| Sbjct 7363 CCTCGGACTCGTGTCAATAACTGTACGGG 7391 Score = 161 bits (178), Expect = 2e-35 Identities = 235/329 (71%), Gaps = 10/329 (3%) Strand=Plus/Plus Query 10178 TATCACCCTCGACACCCCGGAGGTGGTATGCACCAACAAACTGACGACGGCGACGCTTGA 10237 ||||| ||| || || ||||| ||| | || |||||||| |||||||| | ||||| || Sbjct 19795 TATCATCCTAGATACGCCGGAAGTGATTTGTACCAACAAGCTGACGACAGGCACGCTGGA 19854 Query 10238 GGTGCAGAAAGGCGGCACCATGCGGGGAAACATCGAACATACCGGTGGCACGTTGAAATC 10297 ||||| |||||||| |||| || ||||| | ||| | ||| ||| |||| | || Sbjct 19855 AGTGCAAAAAGGCGGAGAAATGCACGGCAACATTGCACACAGCGGCGGCGCGTTCACCTC 19914 Query 10298 AAACGGCGTGCAGGTCGATAACCACGGTCACGGCGGCGTACAACGGGGCGGGAACTGGAC 10357 |||||||||||| | || || ||||| || |||| ||||| | || || | ||||| Sbjct 19915 CAACGGCGTGCAGATTGACAATCACGGCCATGGCGCAGTACAGCACGGTGGCAGTTGGAC 19974 Query 10358 GGAGGGCACAAAATGACAGCGCGTTATCTGGGGATGAACCGCAATACCGGCATAGGTATC 10417 ||||||||| || ||| ||||||||| || ||||||| | | |||| | || | Sbjct 19975 GGAGGGCACCAAGTGAGCGCGCGTTATACCGGCATGAACCCCGA---CGGCGTTGGCGT- 20030 Query 10418 AGTGACAGTGAGCATATCAGCCAGAGCA-----TGCGCGACATTCTGCTGACGCCGGTCG 10472 | |||| | | | ||||| | ||| |||||||||||||| || ||| | | Sbjct 20031 ACTGACGGATA-CCGATCAGTTATGGCATTCCGTGCGCGACATTCTGACCACACCGCTGG 20089 Query 10473 GCTCGCGGGTAATGCGTCGTGAATATGGC 10501 || || || ||||| |||||||| ||| Sbjct 20090 CGTCCCGCGTCATGCGCCGTGAATACGGC 20118 Score = 131 bits (144), Expect = 3e-26 Identities = 275/410 (67%), Gaps = 0/410 (0%) Strand=Plus/Plus Query 12418 GGCGGCTTCTGGATGCGTGAGCTTGGCCTTTATGACGATGAAGGGACGCTGATTGCTGTC 12477 || || |||||||| ||||| | ||||| | ||| | |||||| | ||||||| || Sbjct 22085 GGGGGATTCTGGATACGTGAAATCGGCCTGTTTGATGCTGAAGGTAATTTGATTGCGGTT 22144 Query 12478 GCCAATATGGCCGAAAGCTACAAGCCAGAACTGGCTGAGGGCTCGGGGCGTGCACAGACA 12537 ||||| ||||||| ||| ||||| || || || ||| || ||| ||||| Sbjct 22145 GCCAACTGCGCCGAAACCTATAAGCCGCAATTGCAGGAAGGCAGCGGACGTATTCAGACC 22204 Query 12538 TGCCGCATGGTCATTATTGTCAGCAGTGTCGAGTCTGTGGCGCTGTCCATTGACTCAACG 12597 |||||| | | |||||| ||| || | || |||| ||||| | || Sbjct 22205 GTGCGCATGATTTTGATTGTCTCCAGCACAGAAACAGTATCGCTTAAAATTGATCCGGCG 22264 Query 12598 ATGGTGATGGCGACGCAGGATTATGTCGACGACAGGCTCGCCGAACATGAAAAATCCCGT 12657 ||||| |||| |||| | ||||| || || |||| ||||||||| |||| Sbjct 22265 GTGGTGCTGGCAACGCGTGGCTATGTGGATGATGCTATCGCTACGCATGAAAAAAGCCGT 22324 Query 12658 CGTCATCCTGATGCCACTCTTAAAGAAAAAGGGTTTACTCAGCTCAGTAACGCGACAGAC 12717 ||||| || || || ||| | | |||||| ||| || | || || || || ||| Sbjct 22325 AAACATCCAGACGCAACGCTTGAGGCAAAAGGCTTTGTGCAATTGAGCAATGCCACGGAC 22384 Query 12718 AGCGAGTCTGAAACGCTCGCAGCGACGCCGAAAGCTGTCAAGACAGCGTATGACCTTGCT 12777 || | |||| || | || || ||||||||||| || || ||| | |||||||| || Sbjct 22385 AGTGCCAGTGAAGCGATGGCGGCAACGCCGAAAGCAGTGAAAACAACCTATGACCTCGCC 22444 Query 12778 AATGCGAAATATACAGCTCAGGACGCCACCACAACGCGTAAAGGCATTGT 12827 | | |||||| |||| ||||| || | ||| | || || |||||||| Sbjct 22445 AGCGGGAAATACTCAGCACAGGATGCGAGCACTAGGCAAAAGGGCATTGT 22494 Score = 96.9 bits (106), Expect = 7e-16 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 25548 GAGAAAAAAGCGCTTATTACAGCGATGAATCATTTTCGTGCTGTAGTGAGCTTATTTCCA 25607 || ||||| ||||| |||| || ||||| |||||||| | | |||||||||||| | Sbjct 3465 GAAAAAAAGGCGCTGATTATTGCCATGAACCATTTTCGGGTGATGGTGAGCTTATTTTCT 3524 Query 25608 AAACGGCTAACCATGCCGAATTAGCCAACGGCAGAAATTAATGGCGTAAACCCGCCGGGT 25667 |||| || ||| || || ||| ||| ||||||| |||||||||||||||||||| Sbjct 3525 GAACGACTGACCTTGTCGGTTTAATTCACGACAGAAATCAATGGCGTAAACCCGCCGGGC 3584 Query 25668 ATTCTTTTGCCTAAATTCAGGAG 25690 | |||| |||| |||||| Sbjct 3585 GGCTTATTGCTCAAATGCAGGAG 3607 Score = 80.6 bits (88), Expect = 5e-11 Identities = 201/303 (66%), Gaps = 2/303 (1%) Strand=Plus/Plus Query 25813 CGCCTTGAGGCGCTGGCTATCCATATCACCAAAGAGGGTATGAGCGGCACCGAAGCTGCC 25872 ||||| || ||||||| | ||||||||| | | || || | | || |||||| Sbjct 3733 CGCCTGGAAAGGCTGGCTGTGCATATCACCGGTAACAGACTGGGCAGTATTGATGCTGCC 3792 Query 25873 GAACTGCTGCGTCGTGAAGCAACCCGCTTTGAGAATGAATCACAGGAGCTGCACTAATGG 25932 ||||||||||| || ||| ||| | |||| || | |||||| | || ||| Sbjct 3793 GAACTGCTGCGAGATGTCGCACAGCGCATCCAGAACGACGCGCAGGAGAGCCGCTGATGC 3852 Query 25933 CCGACGCAATGGAT-TTAGCACAACAGCGCGAGCAGGAAGACCGCGAGCGCCACATCAGC 25991 | || ||||||||| ||| | || || |||| | |||| || ||||||| ||| || Sbjct 3853 CAGATGCAATGGATGTTATC-CAGTGGCACGAGGAAGAAGCGCGTCAGCGCCATATCTGC 3911 Query 25992 AACGCGCGCAGCCGTATCGCTGCGCCTTCCCGTTTTCTTTGCGAAGAATGTGACGCACCA 26051 |||| | | || |||| ||| || | | || | | ||||| |||| Sbjct 3912 CGCGCGTTATTCAGACCCGGTGCGGTTTCGCGGGTGCGCTGTGCCCAGTGTGATGCACGC 3971 Query 26052 ATCCCGGAAGCTCGCCGCGCTGCGATTCCGGGCGTGGCTTTTTGCGTGACCTGCCAACAA 26111 || ||| ||| |||| | ||| ||||||||||| | |||||||||||||| || Sbjct 3972 ATTCCGCCAGCCCGCCACCGGGCGGTTCCGGGCGTGCAGTACTGCGTGACCTGCCAGGAA 4031 Query 26112 ATC 26114 ||| Sbjct 4032 ATC 4034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97908986311168