Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_005357.1 Length=42493 Score E Sequences producing significant alignments: (Bits) Value seq2759 378 2e-100 seq2728 329 9e-86 seq3821 138 3e-28 seq3827 107 5e-19 seq2955 104 6e-18 >seq2759 Length=1061 Score = 378 bits (418), Expect = 2e-100 Identities = 502/693 (72%), Gaps = 8/693 (1%) Strand=Plus/Minus Query 40164 TGTCGCTGGACGCCCGCGACTATTTCGACATCAGCGAACCCATCGTCAACGTGGTGCGCG 40223 ||||||| || ||| ||||| || || || ||||| ||| ||||||| | || | Sbjct 980 TGTCGCTTGATGCCACCGACTGGTTTGATATTGAGGAACCGATCCACAACGTGATCCGGG 921 Query 40224 TCGAACTGCCGGCCAAGGCCCGGCGTTTATACCGCGACATGGAGCGCGAGGCGTTTCTCG 40283 | | |||| || ||||| ||| || | || ||||| || |||||| | Sbjct 920 TGCAGATGCCCGCAAAGGCGAGGCAACAGTATCAGGAAATGGAAAAGCAGATGTTTCTGG 861 Query 40284 CCCTGGAATGCGGTATTGAAATTGAAGCATTCAATGCCGCCAGCAAGACCA-TAAAGTGC 40342 ||||| || | || || ||||| || |||||| |||| | || | || || Sbjct 860 AACTGGACAGC---ACCGACATCGAAGCGCAGAACGCCGCC-GCAAAAACAGTGAAATGT 805 Query 40343 CTGCAACTCGCCAACGGCGCAATCTATACCGACGACACGGCGACCACCTGGGCCGATGTC 40402 ||||| | |||| |||||||||||||||||||| | | | ||| ||| | || || Sbjct 804 TTGCAAATTGCCAGCGGCGCAATCTATACCGACGGCGCAGG---CACATGGTCAGAAATC 748 Query 40403 CACGATGTCAAGCTACAGGCCCTTGAATCCATCGTCGCCGAGGCGGCCGGTATGCCGGTG 40462 ||||||| ||||||||||| || || ||| ||||||| || ||||| ||||||| Sbjct 747 CACGATGCGAAGCTACAGGCACTGGACAGCATTCTCGCCGAAGCCGCCGGCGCGCCGGTG 688 Query 40463 CTGGTGGCGTACCACTTCAAGTCCGACCTCGCGCGCCTACAGCGTGCCTTCCCCCAGGGC 40522 ||||| || |||||||| || ||| | || || ||| | ||||| || |||| Sbjct 687 CTGGTTGCCTACCACTTTAAAAGCGATTTAGCCCGTTTACTGAAAGCCTTTCCAAAGGGT 628 Query 40523 CGCGCGCTCGACCAGAACCCGCAGACGATCCGCGACTGGAACGCAGGAAAAATCCCGCTG 40582 |||| || | ||||||||| | |||||||||||||| |||||||| || | Sbjct 627 AAACCGCTTGATTCCGATCCGCAGACGCTGCGCGACTGGAACGCCGGAAAAATACCTGTC 568 Query 40583 CTGTTCGCCCACCCGGCCAGCGCCGGCCACGGGCTGAACCTGCAAGACGGCGGCAACATC 40642 || || || ||||| |||||||| |||||||| ||||| |||| |||||||| || || Sbjct 567 CTTTTTGCTCACCCAGCCAGCGCAGGCCACGGCCTGAATATGCAGGACGGCGGAAATATT 508 Query 40643 CTGGCTTTCTTCGGCCACTGGTGGGACTTGGAACAGTACCAGCAAATCATCGAACGTATC 40702 |||| || ||| ||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 507 CTGGTGTTTTTCTCGCACTGGTGGGATTTGGAACAGTACCAACAAATCATCGAACGTATA 448 Query 40703 GGCCCGACGCGCCAGGCGCAGGCCGGCCATGACCGCCCGGTGTTCATCTACCACATTGTC 40762 |||||||| |||||| ||||| || ||| |||||||||| || || |||||||| || Sbjct 447 GGCCCGACACGCCAGATACAGGCAGGGCATAACCGCCCGGTATTTATTCACCACATTATC 388 Query 40763 GCCACCGACACGATGGACGAATTGGTCATGGCTCGCCGCGAGTCCAAGCGCGAGGTGCAA 40822 ||| |||| || | |||||| |||| ||| | ||||| || || ||||| ||||| Sbjct 387 GCCGCCGATACCGTAGACGAACTGGTAATGCAGAGGCGCGATTCAAAACGCGAAGTGCAG 328 Query 40823 GACCTGCTACTGGAAGCCATGAAAAGGAGAAGA 40855 ||| | || || ||||| ||||||| |||| || Sbjct 327 GACATCCTGCTCGAAGCGATGAAAAAGAGAGGA 295 >seq2728 Length=1005 Score = 329 bits (364), Expect = 9e-86 Identities = 666/988 (67%), Gaps = 48/988 (5%) Strand=Plus/Plus Query 39865 GCTAAAGTCGTTCCGGTTGCAACAGGGCGGCAAGCGCGCGCACGCGCTGGGCCGTGTCGC 39924 ||||||||| ||||| || | || |||||||| ||||| || |||| ||||| Sbjct 5 GCTAAAGTCATTCCGTTTACGGCAAGGCGGCAAACGCGCAGCGGCACTGGCGAAAGTCGC 64 Query 39925 ACATGCCAAGGTTGACCGCTTCATCGAACTGACCGGCACGCCCAGCCCGAACGGGTTGCA 39984 ||| | || |||||| || | || ||||| ||||| |||||||| || Sbjct 65 GCATAAGCACGTACACCGCTGGATGAATCTCACCGGTACGCCTGCGCCGAACGGCCTGAT 124 Query 39985 GGACTTGTGGGGGCAGGCTTGGTTCCTGGACAAAGGCGAGCGCCTGGGCCGCAGTTTCGG 40044 ||| ||||||| ||| | ||||| | || | ||| |||| || || || | || || Sbjct 125 CGACCTGTGGGGCCAGTCATGGTTTGTCGATCATGGCCAGCGTCTCGGGCGTACCTTTGG 184 Query 40045 CGCCTTCAAATCGAGGTGGTTCCAGTCCATCCAGGTAGGCAGCGACCGCCATGCCGTGCG 40104 ||| |||| || | |||||| | ||| ||| | | || | || ||| | Sbjct 185 CGCATTCACTTCCCGCTGGTTCAACAACATTCAGTTTCCCGGCCA--GCAATGGTCAAAG 242 Query 40105 CCTCGAACCGTTGCCGTTTGCCCAGCAACAGATCGAGGACAG-GCTGCGCGATCTGTGCC 40163 | | |||||| || ||||| ||| |||| || ||| ||| ||| |||||| || Sbjct 243 C-TGGAACCGCATCCCTTTGCTCAGGAACAAATGCAGG-CAGCGCTACGCGATGTGACGA 300 Query 40164 TGTCGCTGGACGCCCGCGACTATTTCGACATCAGCGAACCCATCGTCAACGTGGTGCGCG 40223 | || ||||| ||| ||||| || || ||| || || ||| ||||||| | |||| Sbjct 301 TCTCACTGGATGCCGCCGACTGGTTTGATATCGACGCGCCAATCCACAACGTGATCCGCG 360 Query 40224 TCGAACTGCCGGCCAAGGCCCGGCGTTTATACCGCGACATGGAGCGCGAGGCGTTTCTCG 40283 | | | || | || || ||| ||| ||||| ||||| ||| |||||||| Sbjct 361 TACAGATACCCGAAAAAGCGTGGCAGCAATATCGCGAAATGGAAAAGGAGATGTTTCTCG 420 Query 40284 CCCTGGAATGCGGTATTGAAATTGAAGCATTCAATGCCGCCAGCAAGACCATAAAGTGCC 40343 ||||| ||| | || |||| | | ||||| Sbjct 421 AACTGGA---CGGCACTG--------GCATNCG------------------TGAAGTGTT 451 Query 40344 TGCAACTCGCCAACGGCGCAATCTATACCGACGACACGGCGACCACCTGGGCCGATGTCC 40403 ||||| |||||| |||||| |||||||||||||||| | ||| ||| | || ||| Sbjct 452 TGCAAATCGCCAGCGGCGCTATCTATACCGACGACAAAGGTACC---TGGTCAGAAATCC 508 Query 40404 ACGATGTCAAGCTACAGGCCCTTGAATCCATCGTCGCCGAGGCGGCCGGTATGCCGGTGC 40463 |||| | || ||||||| || || ||| || |||| || ||||| |||||||| Sbjct 509 ACGAAGCTAAATTACAGGCGCTGGATAGCATTATCACCGAAGCCGCCGGCGCGCCGGTGC 568 Query 40464 TGGTGGCGTACCACTTCAAGTCCGACCTCGCGCGCCTACAGCGTGCCTTCCCCCAGGGCC 40523 |||| || || |||| || || | | | ||| |||||| | || Sbjct 569 TGGTCGCCTATCACTGGAAACACGTTATTG-------AAAGC----CTTCCCGCGCGGTT 617 Query 40524 GCGCGCTCGACCAGAACCCGCAGACGATCCGCGACTGGAACGCAGGAAAAATCCCGCTGC 40583 | || || | |||| |||||| | ||| | |||||||| |||||||||||| || Sbjct 618 GTCACCTTGATGACGACCCACAGACGTTACGCAATTGGAACGCCGGAAAAATCCCGGTGT 677 Query 40584 TGTTCGCCCACCCGGCCAGCGCCGGCCACGGGCTGAACCTGCAAGACGGCGGCAACATCC 40643 |||||||||| || ||||| || |||| || ||||| |||| || ||||| || |||| Sbjct 678 TGTTCGCCCATCCTGCCAGTGCAAGCCATGGTCTGAATATGCAGGATGGCGGAAATATCC 737 Query 40644 TGGCTTTCTTCGGCCACTGGTGGGACTTGGAACAGTACCAGCAAATCATCGAACGTATCG 40703 ||| || ||| ||||||||||| |||| |||||||| ||||||||||||||||| | Sbjct 738 TGGTGTTTTTCTCTCACTGGTGGGATCTGGAGCAGTACCAACAAATCATCGAACGTATAG 797 Query 40704 GCCCGACGCGCCAGGCGCAGGCCGGCCATGACCGCCCGGTGTTCATCTACCACATTGTCG 40763 | ||||| |||||| ||||| || ||| |||||||||| || || ||||||| ||| Sbjct 798 GGCCGACACGCCAGATACAGGCAGGGCATAACCGCCCGGTATTTATTCACCACATGATCG 857 Query 40764 CCACCGACACGATGGACGAATTGGTCATGGCTCGCCGCGAGTCCAAGCGCGAGGTGCAAG 40823 || ||| ||| | |||||| | || |||| || ||||| || || || || ||||| | Sbjct 858 CCGCCGGCACCGTAGACGAACTTGTGATGGAACGGCGCGATTCAAAACGAGAAGTGCAGG 917 Query 40824 ACCTGCTACTGGAAGCCATGAAAAGGAG 40851 || | || |||||||| ||||| | ||| Sbjct 918 ACATCCTGCTGGAAGCTATGAAGAAGAG 945 >seq3821 Length=1769 Score = 138 bits (152), Expect = 3e-28 Identities = 280/414 (68%), Gaps = 4/414 (1%) Strand=Plus/Plus Query 37951 CTGCGATGCGCTCAAGCGCCTGTGGCGCCGCGCGCATCCGGCGGTTTCGTCGTTCTGGAA 38010 ||||||| |||| || || ||||||||| || || || | | | | |||||| | Sbjct 545 CTGCGATTCGCTAAAACGACTGTGGCGCAATGCCCACCCTGAAATAACCGCTTTCTGGTA 604 Query 38011 GGAACTGGAAGAAGCCGCACGCCTGGCGGTGTTGCGGC--CGGGTACGACCTACGACTGC 38068 ||||||||||| |||| || | ||| |||| | | || | | | || Sbjct 605 TGAACTGGAAGATGCCGTCCGGC--GCGCCATTGCCACACCCGGCATAAGCATTTCTTGT 662 Query 38069 CGCACGCTCAAGGCCCGGCGCGACGGCGCCTGGCTGCGCATCCGCCTGCCGTCCGGCCGA 38128 |||| | ||| || |||||||| |||||| || || | || || || ||||| Sbjct 663 CGCAAATTAAAGCTTCGCCGCGACGGAAGCTGGCTACGTATTCAGCTTCCCTCTGGCCGG 722 Query 38129 TTCCTCTGCTACCCCAGCCCGCAACTGGATGACGCCGGCAAGCTGTCCTACATGGGCGTC 38188 |||| || ||| || | | | || ||| ||||||| | ||| |||||| || Sbjct 723 GCGGTCTGTTATCCCGGCGCACGTATCGACGACAGCGGCAAGATCAGCTATATGGGCATC 782 Query 38189 AACCAGTACAGCCGGAAATGGTCACGCCTCAAGACCTACGGCGGGAAGCTGGCAGAAAAC 38248 || ||||||||||||||| |||||| | ||||||||||| ||||||||||| ||| Sbjct 783 AATACTTACAGCCGGAAATGGCAACGCCTGCAAACCTACGGCGGCAAGCTGGCAGAGAAC 842 Query 38249 GTTACGCAAGCCGCAAGCCGCGACGTGCTCGCGGCCAACATGCCCGCCATCGAGGCGGCC 38308 || || ||||| | ||| || ||| | || || || ||||||| | |||| | Sbjct 843 GTAACCCAAGCTACCGCCCGTGATGTGATGGCTGCGAATATGCCCGGTGTGGAGGATAAC 902 Query 38309 GGCTACCAGATCGTGCTGTCGGTACACGACGAAAACATCACCGAAGCCGACGAC 38362 |||||| | ||| | ||| |||| ||||| ||| | ||||||||| |||| Sbjct 903 GGCTACGACATCATACTGACGGTGCACGATGAAGTACTGACCGAAGCCCCCGAC 956 Score = 87.8 bits (96), Expect = 5e-13 Identities = 183/273 (67%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 37523 CGCGGCTGCATCGTGGCGCCCGAGGGCAAGAAGCTGGTCGTCGCCGACCTGTCGAACATC 37582 |||||||||||| |||| |||||||| || || ||||| || ||||| || || || Sbjct 120 CGCGGCTGCATCATGGCCCCCGAGGGTAAAAAACTGGTGGTGTCCGACTTGAGCAATATT 179 Query 37583 GAAGGACGCATGATTGCGTGGCTCGCCGGCGAGGATTGGAAGCTGGCCGCTTTCCGTGAA 37642 || || ||| | | || ||| | || || || || ||||| | || ||| | || Sbjct 180 GAGGGGCGCGTACTGGCATGGTTGGCAGGAGAAGACTGGAAATTACAGGCGTTCAGGGAT 239 Query 37643 TTCGACGACGGCGCCGGCCCCGACCTCTACAAGCTGGCCTACGCCAAAGCCTTCGCGGTG 37702 | |||| ||| | || | ||||| ||||||||||| || || ||||| | Sbjct 240 TATGACGCGGGCACTGGACATGACCTGTACAAGCTGGCGTATGCACGGGCCTTTCGTATA 299 Query 37703 TCGCCTGATTCGGTCGATAAAGACCAGCGCCAGATTGGCAAGGTCATGGAACTGATGCTG 37762 ||||| ||| |||||||| ||||| || || |||||| | ||| | ||| Sbjct 300 AACCCTGACGATGTCTCAAAAGACCAACGCCAAATCGGTAAGGTCCTCGAATTAGCTCTG 359 Query 37763 GGCTACGAGGGCGGCGTCGGTGCCTTTCTCACC 37795 || || |||| || |||| || || || ||| Sbjct 360 GGGTATCAGGGAGGGGTCGCCGCTTTCCTGACC 392 >seq3827 Length=1665 Score = 107 bits (118), Expect = 5e-19 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 38177 TACATGGGCGTCAACCAGTACAGCCGGAAATGGTCACGCCTCAAGACCTACGGCGGGAAG 38236 || |||||| ||||| ||||||||||||||| |||||| | ||||||||||| ||| Sbjct 1536 TATATGGGCATCAACACCTACAGCCGGAAATGGCAACGCCTGCAAACCTACGGCGGCAAG 1477 Query 38237 CTGGCAGAAAACGTTACGCAAGCCGCAAGCCGCGACGTGCTCGCGGCCAACATGCCCGCC 38296 |||||||| ||||| || || || | ||| || ||| | || || || ||||||| Sbjct 1476 CTGGCAGAGAACGTAACCCAGGCTACTGCCCGTGATGTGATGGCCGCGAATATGCCCGGT 1417 Query 38297 ATCGAGGCGGCCGGCTACCAGATCGTGCTGTCGGTACACGACGA 38340 | |||| ||||||| | ||| | ||| |||| || ||||| Sbjct 1416 GTGGAGGATAGCGGCTACGACATCATACTGACGGTGCATGACGA 1373 >seq2955 Length=1537 Score = 104 bits (114), Expect = 6e-18 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 36685 GCGATGGCGGGACACGATGGTCAAGGCCCTGGCGCACTCGCTGCCCGGCGCGCTGGGCGA 36744 ||| |||||||| || ||||||| | | ||||||||| ||||| || |||||||||| Sbjct 150 GCGCTGGCGGGATACAATGGTCAGGTCGCTGGCGCACGGCCTGCCGGGATCGCTGGGCGA 91 Query 36745 TCTGTGCGACATCCTCAAGGTGCCGACCGACAAGGCCAAGGACAAGGCCGGCAAGCAGCT 36804 |||||| ||||| |||| || || || || |||||| | ||||| || ||||| || Sbjct 90 TCTGTGTGACATTCTCAGTGTTTCGGAGGATAAAGCCAAGAATAAGGCTGGTAAGCAACT 31 Query 36805 AATCATGCTGTTCTGCAAACCGCGTCC 36831 ||| ||| ||||| || || || || Sbjct 30 GATCCAGCTATTCTGTAAGCCTCGACC 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135849598465280