Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq166 122 5e-23 seq30 102 4e-17 seq39 100 1e-16 seq42 91.5 8e-14 >seq166 Length=1044690 Score = 122 bits (134), Expect = 5e-23 Identities = 78/86 (91%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||| || |||||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 829362 AAACAAAAAAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 829303 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 829302 GCTCTAACCAACTGAGCTAATGGGCC 829277 >seq30 Length=1589435 Score = 102 bits (112), Expect = 4e-17 Identities = 76/89 (85%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| |||||||| | || |||||||||| ||||||||||||||||||||| Sbjct 470928 AAGAAAAAA--AAATTGGCTCCTGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCAC 470871 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||| | ||| Sbjct 470870 GACGCTCTAACCAACTGAGCTAAGGAGCC 470842 Score = 95.1 bits (104), Expect = 6e-15 Identities = 83/102 (81%), Gaps = 4/102 (4%) Strand=Plus/Plus Query 11428 GAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 |||||| | || | | ||||||| | |||| | || |||||||||| |||||||| Sbjct 499197 GAAATAAAAAAATGA-AAAAAATAA---TGGCTCTTGGGGGGATCGAACCCGCGACCTTC 499252 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||| |||||||||||||| | ||| Sbjct 499253 GCGTTATTAGCACGACGCTCTAACCAACTGAGCTAAAGAGCC 499294 >seq39 Length=2154872 Score = 100 bits (110), Expect = 1e-16 Identities = 74/86 (86%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| |||||||| | || |||||||||| |||||||||||||||||||||||| Sbjct 1679530 AAAAAA--AAATTGGCTCCTGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGAC 1679473 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||| | ||| Sbjct 1679472 GCTCTAACCAACTGAGCTAAGGAGCC 1679447 >seq42 Length=2278235 Score = 91.5 bits (100), Expect = 8e-14 Identities = 72/86 (84%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| |||||||| | || |||||||||| |||||||||||||||||||||||| Sbjct 459605 AAAAAA--AAATTGGCTCTTGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGAC 459662 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||| ||||||||| | ||| Sbjct 459663 GCTCTAACCGGCTGAGCTAAAGAGCC 459688 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261478554285568