Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_006548.1 Length=38439 Score E Sequences producing significant alignments: (Bits) Value seq2969 190 5e-44 seq2694 163 7e-36 seq3640 134 3e-27 seq3079 129 1e-25 seq3688 87.8 4e-13 >seq2969 Length=1929 Score = 190 bits (210), Expect = 5e-44 Identities = 380/551 (69%), Gaps = 13/551 (2%) Strand=Plus/Plus Query 26039 CCCTGGATAGGGGGAAAGCGCCGCCTCGCTGACCGCATCTTCCCGCTTTTCCCACGCCAC 26098 ||||||||||| || || || || || || | | || || |||| ||||| || Sbjct 197 CCCTGGATAGGCGGTAAACGGCGGCTGGCAAAACAGATTTTACCGCACTTCCCGGCGCAT 256 Query 26099 TCCTGCTATGTCGAGCCTTTCGCAGGTGGGGCGGCACTGTTCTTCCTACGGCCGGTGCCG 26158 |||||| || || || || || | |||||| || ||||| | | | || Sbjct 257 ATCTGCTACGTGGAACCGTTTTGTGGCGCGGCGGCGCTCTTCTTTATGAAGTCAC--CCA 314 Query 26159 GCGGATGTGGAAGTGCTCAACGACATCAACGGCGACCTGGTCAACCTGTACCGCGTCGTT 26218 || | | ||||||| | ||||| ||||||||||| |||||||| || || || || | Sbjct 315 GCA-AGGCGGAAGTGATTAACGATATCAACGGCGAACTGGTCAATCTCTATCGGGTGCTG 373 Query 26219 CAGCATCATCTGGAAGAGTTCGTCCGCCAGTTCAAATGGGCGC---TCAGCTCTCGCCAG 26275 | || ||||||||||| || | |||||||| |||||||||| ||||| || | Sbjct 374 AAACACCATCTGGAAGAATTTATACGCCAGTTTAAATGGGCGCTGGTCAGC-AGGGCGAT 432 Query 26276 GTCTTCAAGTGGCTGCAGGAGACCCGGCCGGAAACGCTGACCGACATCCAGCGCGCCGCG 26335 || |||| ||| || | |||| | | || || | ||||| ||||||||||| || Sbjct 433 GT-ATCAA-TGGTTGAAAATCACCCCGACCGAGACCTTAACCGATATCCAGCGCGCGGCC 490 Query 26336 CGCTTTTACTACCTGCAGCAGAGCGCGTTCGGCGGCCGGGTCGATGGCCAGAGCTACGGA 26395 || || || |||||||| | |||||||||||| ||| | | || | || || Sbjct 491 CGTTTCTATTACCTGCAAAAACAGGCGTTCGGCGGCAAGGTGGCCGAGCACACCTTTGGC 550 Query 26396 ACCGCCACCACCTCACCGCCTGGGCTCAACCTGTTGCGCCTGGAAGAAACACTGTCGGCG 26455 |||||||| | |||| | || |||||||||||| |||||||| ||||||| | Sbjct 551 GTGACCACCACCACTGCGCCACGCCTGAACCTGTTGCGCATGGAAGAAGAACTGTCGTTG 610 Query 26456 GCTCACCTGCGGCTGAGCA-ATACCTACATCGAGCACCTCAGCT-GGCAGGACTGCCTCC 26513 ||||| ||||| || | || |||| ||| || || || || |||| | |||| | Sbjct 611 GCTCATCTGCGACT-ATCACGCACCTCCATTGAACAACTTGACTGGGCAAG-CTGCATTG 668 Query 26514 GGCGCTATGATCGAGAGCACACCCTCTTTTATATGGACCCGCCGTACTGGGAGACGGAGG 26573 |||||||| || |||||| || || || ||||||||||| |||| |||||| | Sbjct 669 CCCGCTATGACCGTCCGCACACGCTGTTCTACTGCGACCCGCCGTATTGGGGGACGGAAG 728 Query 26574 GCTATGGCGTG 26584 | ||||| ||| Sbjct 729 GTTATGGGGTG 739 >seq2694 Length=15341 Score = 163 bits (180), Expect = 7e-36 Identities = 269/383 (70%), Gaps = 4/383 (1%) Strand=Plus/Minus Query 7785 CATGCGCTCGATGTCGTCTAG-GTCGAGGCCTGCAACTGTGCCTCCATCGGCAAGTGCAA 7843 |||||| |||| || ||||| ||| ||||| ||| ||||| || ||||| ||| | Sbjct 1371 CATGCGGTCGACCTCATCTAGCGTC-AGGCCAACAATGGTGCCGCCTTCGGCGAGTTCCG 1313 Query 7844 CGAGATCGTCATCATCTTCGCTGATCAGTTCGAGTAGCTTCGCCTTCCCCAAAACGGACA 7903 | || || || ||||||| | | || | ||| | ||||| || || || || ||| || Sbjct 1312 CCAGCTCTTCGTCATCTTGGGTCATTAATTCAAACAGCTTTGCTTTTCCTAATCCGGCCA 1253 Query 7904 ACGTTGTCCGTTTTGAC-TCCAGTGCAGGAGACAGGTATTTGAGCGCCGCCTGCATCATC 7962 |||| | ||||||| | | | || |||||| | ||||| || | ||| | ||||||| Sbjct 1252 ACGTAGGCCGTTTTCCCATTAACTG-AGGAGATAAATATTTTAGTGACGCTTCCATCATC 1194 Query 7963 CGGCGCGCTGCGCGCTCATGTATCCCCAACTGTTCAGTGACGATCTGAGTGAAGTCGCCG 8022 | | || | | || || || || || ||||| || || | ||| || |||||| Sbjct 1193 CTCCTTGCCGTTCTTTCTGCTAGACCTAATTGCTCAGTAACAATTTTAGTAAACTCGCCG 1134 Query 8023 TGGGGCTCATGCTCTTTCAGCACGATCAGGCGCTTTCCGGCTTCCAGCATGGCTTCTGCC 8082 || ||||||| ||||| | | || || ||||| || ||||| ||||| ||||| || Sbjct 1133 TGTGGCTCATTTTCTTTAATAATAATTAGCCGCTTCCCCGCTTCTAGCATTGCTTCGGCA 1074 Query 8083 GACTGGGCCATGTAGAAGCGCGCCTCATTGACCACGCGGATGCGGTCGTAAGGGAGGCCG 8142 ||| ||||| |||||||||||||||| || | ||| || || || || || || Sbjct 1073 CTCTGTGCCATATAGAAGCGCGCCTCATGCACAATGCGTTCACGCTCATAGGGTAGACCA 1014 Query 8143 TCGCCGAACTGCGCCATGACCTC 8165 || || || ||||||| ||||| Sbjct 1013 TCCCCAAAACGCGCCATCACCTC 991 Score = 147 bits (162), Expect = 5e-31 Identities = 374/555 (67%), Gaps = 23/555 (4%) Strand=Plus/Minus Query 26039 CCCTGGATAGGGGGAAAGCGCCGCCTCGCTGACCGCATCTTCCCGCTTTTCCC-ACGCCA 26097 ||||||||||| || || || || || || | | || || |||| ||||| |||| | Sbjct 2679 CCCTGGATAGGCGGTAAACGGCGGCTGGCAAAACAGATTTTACCGCGCTTCCCTACGC-A 2621 Query 26098 CTCCTGCTATGTCGAGCCTTTCGCAGGTGGGGCGGCACTGTTCTTCCTACGGCCGGTGCC 26157 ||||||| || ||||| || || | |||||| || || || | | | || Sbjct 2620 TACCTGCTACGTGGAGCCATTTTGTGGCGCGGCGGCGCTCTTTTTTATGAAGTCA---CC 2564 Query 26158 GGCGGATGTGGAAGTGCTCAACGACATCAACGGCGACCTGGTCAACCTGTACCGCGTCGT 26217 | | | ||| ||| | ||||| ||||||||||| |||||||| || || || || | Sbjct 2563 GAGCAAAGCGGAGGTGATTAACGATATCAACGGCGAGCTGGTCAATCTTTATCGGGTGTT 2504 Query 26218 TCAGCATCATCTGGAAGAGTTCGTCCGCCAGTTCAAATGGGCGC---TCAGCTCTCGCCA 26274 | || |||||||||||||| | |||||||| |||||||||| ||||| | || | Sbjct 2503 GAAACACCATCTGGAAGAGTTTATGCGCCAGTTTAAATGGGCGCTGGTCAGC-CGGGCGA 2445 Query 26275 GGTCTTCAAGTGGCTGCAGGAGACCCGGCCGGAAACGCTGACCGACATCCAGCGCGCCGC 26334 || |||| ||| | | || | | | || || || ||||| ||||||||||| || Sbjct 2444 TGT-ATCAA-TGGTTAAACATCACGCCGACCGAGACCCTAACCGATATCCAGCGCGCAGC 2387 Query 26335 GCGCTTTTACTACCTGCAGCAGAGCGCGTTCGGCGGCCGGGTCGATGGCCAGAGCTACGG 26394 || || || |||||||| | |||||||||||| ||| | | || | || || Sbjct 2386 ACGTTTCTATTACCTGCAAAAACAGGCGTTCGGCGGCAAGGTGGCGGAGCACACCTTTGG 2327 Query 26395 AACCGCCACCACCTCACC---GCCTGGGCTCAACCTGTTGCGCCTGGAAGAAACACTGTC 26451 || ||||| || | ||| | || |||||| ||||| |||||||| | || Sbjct 2326 ---CGTGACCACTACAACGGGGCCGCGCCTGAACCTGCTGCGCATGGAAGAAGAGTTATC 2270 Query 26452 GGCGGCTCACCTGCGGCTGAGCA-ATACCTACATCGAGCACCTCAGCTGG--CAGGACTG 26508 | || || |||| | | | || ||| ||| || ||||| ||| ||| ||| Sbjct 2269 GCTCGCGCATCTGC-GATTATCACGCACCACCATTGAACACCTGGATTGGGCCAG--CTG 2213 Query 26509 CCTCCGGCGCTATGATCGAGAGCACACCCTCTTTTATATGGACCCGCCGTACTGGGAGAC 26568 | || ||||| || |||||| || ||||| ||||| |||||||||| || Sbjct 2212 TATTGCCCGTTATGACCGTCCGCACACGCTGTTTTACTGCGACCCACCGTACTGGGGAAC 2153 Query 26569 GGAGGGCTATGGCGT 26583 |||||||||||||| Sbjct 2152 CGAGGGCTATGGCGT 2138 >seq3640 Length=1178 Score = 134 bits (148), Expect = 3e-27 Identities = 321/479 (67%), Gaps = 10/479 (2%) Strand=Plus/Plus Query 4682 GCGCGGGGAAAGCTTGGTGCCCAGTTCGGGCTGGCCGATCAGGATGATGCTGACCAGCTT 4741 |||| ||| | |||| |||||||||||| || || | ||||| |||| | ||| || Sbjct 688 GCGCTCGGATAACTTGTCGCCCAGTTCGGGTTGTCCCAGCAGGACGATGGACAGCAGTTT 747 Query 4742 GGTGAAGCCGTCCTCCAACTCACGCAGGCGCTTCAGGTGCTTGAGCGTGGCGATCGGCAG 4801 | |||||||| |||| |||| | ||| || |||||||| | || | ||| ||||| Sbjct 748 TTTAAAGCCGTCTTCCAGCTCAAAGAAGCGTTTGAGGTGCTTTAAGGTCGGGATGGGCAG 807 Query 4802 GCTGTGTGCCTCCTCGATGATCAGAACGTGCTTGAAGCCGG--CGGCATGGCTGACCTTC 4859 || || || || || | ||| || || || | |||| |||| |||| | || Sbjct 808 AGAATGGGCTTCTTCAATCACCAGCACATGGCTGTACCCGGCACGGC--TGCTGTCTTTT 865 Query 4860 AAGGCTCGGTGCAATTGCGCGAAGCGTGCCTCCGG-GCTCGATTTCGGCCGCTCCAGTGG 4918 || |||||| || || |||||| |||||||| | || ||| | |||||||| Sbjct 866 AATAGTCGGTGTAACTGACGGAAGCGGGCCTCCGGCGAGCG-TTTAAGTTTTTCCAGTGG 924 Query 4919 CGCAACCGCAGCCATCATGGCTTCGGCAATGTGGGTGACACGCAAGGTCTTGCCCT--TG 4976 || | | | | || || ||||||| || | | || ||||||||||| || Sbjct 925 GGCCAGGGTATGGACAATAGCCTCGGCAAGACTGGCGGCTTTCAGGGTCTTGCCCTGATG 984 Query 4977 GTATCGCTGTCCTCCATGGCCAGGACGTAGGGCTCGATAGGGATCACTGGAGCATTCTCG 5036 | || |||| ||||| ||||| |||||||| || || | ||| || || || || Sbjct 985 G--TCATTGTCTTCCATCGCCAGCACGTAGGGTTCAATCACCACCACGGGGGCGTTTTCC 1042 Query 5037 GTGTTCAGGCGGTGCACCAGATCGCGGCGCAGGGTGGATTTACCGGCGCCGGACTCACCC 5096 | | ||| | ||| || || ||||||||| |||||| | |||||| ||||| Sbjct 1043 CGATAAATGCGATCAGTCAGGTCACGACGCAGGGTGCTTTTACCCGAGCCGGATTCACCG 1102 Query 5097 ACCACCGCAAGAAAGCCGTCATGTCGGGCGACGTGATACATCGCCTCGCGGACGTAGCG 5155 | ||||| | ||| || ||| || ||| || |||| |||||| || || || || Sbjct 1103 ATAACCGCGATAAAACCACCATAGCGTGCGGTCTGGTACAACGCCTCACGCACATAACG 1161 >seq3079 Length=1278 Score = 129 bits (142), Expect = 1e-25 Identities = 337/507 (66%), Gaps = 8/507 (2%) Strand=Plus/Plus Query 4653 CGCTGCACCACCTCGCGTACG-TCACCGTTGCGCGGGGAAAGCTTGGTGCCCAGTTCGGG 4711 ||||| ||||| || | ||| ||| | |||| ||| | |||| |||||||||||| Sbjct 401 CGCTGTACCACTTCCCTGACGGTCAGCAG-GCGCTCGGATAACTTGTCGCCCAGTTCGGG 459 Query 4712 CTGGCCGATCAGGATGATGCTGACCAGCTTGGTGAAGCCGTCCTCCAACTCACGCAGGCG 4771 || || | ||| | |||| | ||| || | |||||||| |||| |||| | ||| Sbjct 460 TTGTCCCAGCAGAACGATGGACAGCAGTTTTTTAAAGCCGTCTTCCAGCTCAAAGAAGCG 519 Query 4772 CTTCAGGTGCTTGAGCGTGGCGATCGGCAGGCTGTGTGCCTCCTCGATGATCAGAACGTG 4831 || |||||||| | || | || ||||| || || || || || | ||| || || Sbjct 520 TTTGAGGTGCTTTAAGGTCGGTATGGGCAGCGCATGGGCTTCTTCAATCACCAGCACATG 579 Query 4832 CTTGAAGCCGGCGGCATGGCTGACCTTCAAGGCTCGGTGCAATTGCGCGAAGCGTGCCTC 4891 || | ||||| | ||| | || || | ||||| | || ||||| ||||| Sbjct 580 GCTGTACCCGGCACGGTTGCTCTCTTTTAATACCCGGTGTAGCTGACGAAAGCGGGCCTC 639 Query 4892 CGG-GCTCGATTTCGGCCGCTCCAGTGGCGCAACCGCAGCCATCATGGCTTCGGCAATGT 4950 ||| | || ||| | |||||||| || | | | | || || ||||||| Sbjct 640 CGGCGAGCG-TTTGAGTTTTTCCAGTGGGGCCAGGGTATGGACAATAGCCTCGGCAAGAC 698 Query 4951 GGGTGACACGCAAGGTCTTGCCCT--TGGTATCGCTGTCCTCCATGGCCAGGACGTAGGG 5008 || | | || ||| ||||||| |||| || |||| ||||||||||| |||||||| Sbjct 699 TGGCGGCTTTCAGGGTTTTGCCCTGATGGT--CGTTGTCTTCCATGGCCAGCACGTAGGG 756 Query 5009 CTCGATAGGGATCACTGGAGCATTCTCGGTGTTCAGGCGGTGCACCAGATCGCGGCGCAG 5068 || || | ||| || || || || | | ||||| ||| || || ||||| Sbjct 757 TTCAATCACCACCACGGGGGCGTTTTCCCGATAAATGCGGTCAGTCAGGTCACGACGCAG 816 Query 5069 GGTGGATTTACCGGCGCCGGACTCACCCACCACCGCAAGAAAGCCGTCATGTCGGGCGAC 5128 ||| |||||| | |||||| ||||| | || || | ||||||| ||| |||||| Sbjct 817 GGTACTTTTACCCGAGCCGGATTCACCGATAACGGCGATAAAGCCGCCATAACGGGCGGT 876 Query 5129 GTGATACATCGCCTCGCGGACGTAGCG 5155 || |||| |||||| || || || || Sbjct 877 CTGGTACAACGCCTCACGCACATAACG 903 >seq3688 Length=22785 Score = 87.8 bits (96), Expect = 4e-13 Identities = 243/370 (66%), Gaps = 2/370 (1%) Strand=Plus/Minus Query 2815 CTCCGCGCGAGCACCTTCCGTCCATTCGTGGAGGCACTCGTCGATCAGCGCCTTGGCCGC 2874 ||||| ||| ||| | |||||| || | ||| || || |||| |||||||| || Sbjct 864 CTCCGGGCGCGCATTCTGCGTCCACTCCGTCATGCAATCATCAATCAATGCCTTGGCGGC 805 Query 2875 CTGCAGGCGCTCGTCGAAGGCGATGTTGTCGGCCATGGCCCGAATGACCTTGTAGCGACC 2934 ||| | ||||| || |||| ||| ||| |||||| || || ||||||||||| || Sbjct 804 CTGGATACGCTCATCAAAGGTAATGCGGTCCTGCATGGCGCGCATAACCTTGTAGCGGCC 745 Query 2935 GTCGAAGCTGACCAGAGAGGCGTTGCCCTTCTTGCCTCCTACCTTCGCCTGGTACTGCTC 2994 || ||| ||| | | ||||| || |||| || || || ||||||||| Sbjct 744 ATCAAAGGAATACAGCGTCACATTGCCTTTTCTGCCGCCACGTTTTACCCCGTACTGCTC 685 Query 2995 GGCCGACAGGGTGATGAAGGCTTCGATATCGCCGAATGTTGCCAGTTTGAAATCCAGCAA 3054 ||||||| || || || | ||||||| | || | |||| || || |||| Sbjct 684 AATCGACAGGTCAATCAATGCCTGGATATCGACAAACGCGCGGTGTTTAAAGTCTCGCAA 625 Query 3055 CGCCTTGTTCAGAGCCTTCCCCTTGGCAACGATCTCCTGCA-CAAGGCGGTCGCGCTCCA 3113 |||| | ||| | | | || || || || | | ||| || |||||||||| Sbjct 624 TGCCTCATGCAGCGGCCGGGCGCGCGCCACAATATCTTTAACCAACGC-GTCGCGCTCCT 566 Query 3114 GGTCAATGGGCTTGATCATTTCTTCAGGTACCAGGCGCCCCTTGGCGTCCATGCGGTACC 3173 |||||||| || | ||| | || |||| || || ||||||||| | ||| | Sbjct 565 TATCAATGGGTTTTACCATGGCGTCGGGTATCAATACGCCTTTGGCGTCCTGCCAGTAGC 506 Query 3174 CGGCGGGAAC 3183 ||||||| || Sbjct 505 CGGCGGGTAC 496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122877409743616