Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27]
3,968 sequences; 388,752,668 total letters
Query= NC_006548.1
Length=38439
Score E
Sequences producing significant alignments: (Bits) Value
seq2969 190 5e-44
seq2694 163 7e-36
seq3640 134 3e-27
seq3079 129 1e-25
seq3688 87.8 4e-13
>seq2969
Length=1929
Score = 190 bits (210), Expect = 5e-44
Identities = 380/551 (69%), Gaps = 13/551 (2%)
Strand=Plus/Plus
Query 26039 CCCTGGATAGGGGGAAAGCGCCGCCTCGCTGACCGCATCTTCCCGCTTTTCCCACGCCAC 26098
||||||||||| || || || || || || | | || || |||| ||||| ||
Sbjct 197 CCCTGGATAGGCGGTAAACGGCGGCTGGCAAAACAGATTTTACCGCACTTCCCGGCGCAT 256
Query 26099 TCCTGCTATGTCGAGCCTTTCGCAGGTGGGGCGGCACTGTTCTTCCTACGGCCGGTGCCG 26158
|||||| || || || || || | |||||| || ||||| | | | ||
Sbjct 257 ATCTGCTACGTGGAACCGTTTTGTGGCGCGGCGGCGCTCTTCTTTATGAAGTCAC--CCA 314
Query 26159 GCGGATGTGGAAGTGCTCAACGACATCAACGGCGACCTGGTCAACCTGTACCGCGTCGTT 26218
|| | | ||||||| | ||||| ||||||||||| |||||||| || || || || |
Sbjct 315 GCA-AGGCGGAAGTGATTAACGATATCAACGGCGAACTGGTCAATCTCTATCGGGTGCTG 373
Query 26219 CAGCATCATCTGGAAGAGTTCGTCCGCCAGTTCAAATGGGCGC---TCAGCTCTCGCCAG 26275
| || ||||||||||| || | |||||||| |||||||||| ||||| || |
Sbjct 374 AAACACCATCTGGAAGAATTTATACGCCAGTTTAAATGGGCGCTGGTCAGC-AGGGCGAT 432
Query 26276 GTCTTCAAGTGGCTGCAGGAGACCCGGCCGGAAACGCTGACCGACATCCAGCGCGCCGCG 26335
|| |||| ||| || | |||| | | || || | ||||| ||||||||||| ||
Sbjct 433 GT-ATCAA-TGGTTGAAAATCACCCCGACCGAGACCTTAACCGATATCCAGCGCGCGGCC 490
Query 26336 CGCTTTTACTACCTGCAGCAGAGCGCGTTCGGCGGCCGGGTCGATGGCCAGAGCTACGGA 26395
|| || || |||||||| | |||||||||||| ||| | | || | || ||
Sbjct 491 CGTTTCTATTACCTGCAAAAACAGGCGTTCGGCGGCAAGGTGGCCGAGCACACCTTTGGC 550
Query 26396 ACCGCCACCACCTCACCGCCTGGGCTCAACCTGTTGCGCCTGGAAGAAACACTGTCGGCG 26455
|||||||| | |||| | || |||||||||||| |||||||| ||||||| |
Sbjct 551 GTGACCACCACCACTGCGCCACGCCTGAACCTGTTGCGCATGGAAGAAGAACTGTCGTTG 610
Query 26456 GCTCACCTGCGGCTGAGCA-ATACCTACATCGAGCACCTCAGCT-GGCAGGACTGCCTCC 26513
||||| ||||| || | || |||| ||| || || || || |||| | |||| |
Sbjct 611 GCTCATCTGCGACT-ATCACGCACCTCCATTGAACAACTTGACTGGGCAAG-CTGCATTG 668
Query 26514 GGCGCTATGATCGAGAGCACACCCTCTTTTATATGGACCCGCCGTACTGGGAGACGGAGG 26573
|||||||| || |||||| || || || ||||||||||| |||| |||||| |
Sbjct 669 CCCGCTATGACCGTCCGCACACGCTGTTCTACTGCGACCCGCCGTATTGGGGGACGGAAG 728
Query 26574 GCTATGGCGTG 26584
| ||||| |||
Sbjct 729 GTTATGGGGTG 739
>seq2694
Length=15341
Score = 163 bits (180), Expect = 7e-36
Identities = 269/383 (70%), Gaps = 4/383 (1%)
Strand=Plus/Minus
Query 7785 CATGCGCTCGATGTCGTCTAG-GTCGAGGCCTGCAACTGTGCCTCCATCGGCAAGTGCAA 7843
|||||| |||| || ||||| ||| ||||| ||| ||||| || ||||| ||| |
Sbjct 1371 CATGCGGTCGACCTCATCTAGCGTC-AGGCCAACAATGGTGCCGCCTTCGGCGAGTTCCG 1313
Query 7844 CGAGATCGTCATCATCTTCGCTGATCAGTTCGAGTAGCTTCGCCTTCCCCAAAACGGACA 7903
| || || || ||||||| | | || | ||| | ||||| || || || || ||| ||
Sbjct 1312 CCAGCTCTTCGTCATCTTGGGTCATTAATTCAAACAGCTTTGCTTTTCCTAATCCGGCCA 1253
Query 7904 ACGTTGTCCGTTTTGAC-TCCAGTGCAGGAGACAGGTATTTGAGCGCCGCCTGCATCATC 7962
|||| | ||||||| | | | || |||||| | ||||| || | ||| | |||||||
Sbjct 1252 ACGTAGGCCGTTTTCCCATTAACTG-AGGAGATAAATATTTTAGTGACGCTTCCATCATC 1194
Query 7963 CGGCGCGCTGCGCGCTCATGTATCCCCAACTGTTCAGTGACGATCTGAGTGAAGTCGCCG 8022
| | || | | || || || || || ||||| || || | ||| || ||||||
Sbjct 1193 CTCCTTGCCGTTCTTTCTGCTAGACCTAATTGCTCAGTAACAATTTTAGTAAACTCGCCG 1134
Query 8023 TGGGGCTCATGCTCTTTCAGCACGATCAGGCGCTTTCCGGCTTCCAGCATGGCTTCTGCC 8082
|| ||||||| ||||| | | || || ||||| || ||||| ||||| ||||| ||
Sbjct 1133 TGTGGCTCATTTTCTTTAATAATAATTAGCCGCTTCCCCGCTTCTAGCATTGCTTCGGCA 1074
Query 8083 GACTGGGCCATGTAGAAGCGCGCCTCATTGACCACGCGGATGCGGTCGTAAGGGAGGCCG 8142
||| ||||| |||||||||||||||| || | ||| || || || || || ||
Sbjct 1073 CTCTGTGCCATATAGAAGCGCGCCTCATGCACAATGCGTTCACGCTCATAGGGTAGACCA 1014
Query 8143 TCGCCGAACTGCGCCATGACCTC 8165
|| || || ||||||| |||||
Sbjct 1013 TCCCCAAAACGCGCCATCACCTC 991
Score = 147 bits (162), Expect = 5e-31
Identities = 374/555 (67%), Gaps = 23/555 (4%)
Strand=Plus/Minus
Query 26039 CCCTGGATAGGGGGAAAGCGCCGCCTCGCTGACCGCATCTTCCCGCTTTTCCC-ACGCCA 26097
||||||||||| || || || || || || | | || || |||| ||||| |||| |
Sbjct 2679 CCCTGGATAGGCGGTAAACGGCGGCTGGCAAAACAGATTTTACCGCGCTTCCCTACGC-A 2621
Query 26098 CTCCTGCTATGTCGAGCCTTTCGCAGGTGGGGCGGCACTGTTCTTCCTACGGCCGGTGCC 26157
||||||| || ||||| || || | |||||| || || || | | | ||
Sbjct 2620 TACCTGCTACGTGGAGCCATTTTGTGGCGCGGCGGCGCTCTTTTTTATGAAGTCA---CC 2564
Query 26158 GGCGGATGTGGAAGTGCTCAACGACATCAACGGCGACCTGGTCAACCTGTACCGCGTCGT 26217
| | | ||| ||| | ||||| ||||||||||| |||||||| || || || || |
Sbjct 2563 GAGCAAAGCGGAGGTGATTAACGATATCAACGGCGAGCTGGTCAATCTTTATCGGGTGTT 2504
Query 26218 TCAGCATCATCTGGAAGAGTTCGTCCGCCAGTTCAAATGGGCGC---TCAGCTCTCGCCA 26274
| || |||||||||||||| | |||||||| |||||||||| ||||| | || |
Sbjct 2503 GAAACACCATCTGGAAGAGTTTATGCGCCAGTTTAAATGGGCGCTGGTCAGC-CGGGCGA 2445
Query 26275 GGTCTTCAAGTGGCTGCAGGAGACCCGGCCGGAAACGCTGACCGACATCCAGCGCGCCGC 26334
|| |||| ||| | | || | | | || || || ||||| ||||||||||| ||
Sbjct 2444 TGT-ATCAA-TGGTTAAACATCACGCCGACCGAGACCCTAACCGATATCCAGCGCGCAGC 2387
Query 26335 GCGCTTTTACTACCTGCAGCAGAGCGCGTTCGGCGGCCGGGTCGATGGCCAGAGCTACGG 26394
|| || || |||||||| | |||||||||||| ||| | | || | || ||
Sbjct 2386 ACGTTTCTATTACCTGCAAAAACAGGCGTTCGGCGGCAAGGTGGCGGAGCACACCTTTGG 2327
Query 26395 AACCGCCACCACCTCACC---GCCTGGGCTCAACCTGTTGCGCCTGGAAGAAACACTGTC 26451
|| ||||| || | ||| | || |||||| ||||| |||||||| | ||
Sbjct 2326 ---CGTGACCACTACAACGGGGCCGCGCCTGAACCTGCTGCGCATGGAAGAAGAGTTATC 2270
Query 26452 GGCGGCTCACCTGCGGCTGAGCA-ATACCTACATCGAGCACCTCAGCTGG--CAGGACTG 26508
| || || |||| | | | || ||| ||| || ||||| ||| ||| |||
Sbjct 2269 GCTCGCGCATCTGC-GATTATCACGCACCACCATTGAACACCTGGATTGGGCCAG--CTG 2213
Query 26509 CCTCCGGCGCTATGATCGAGAGCACACCCTCTTTTATATGGACCCGCCGTACTGGGAGAC 26568
| || ||||| || |||||| || ||||| ||||| |||||||||| ||
Sbjct 2212 TATTGCCCGTTATGACCGTCCGCACACGCTGTTTTACTGCGACCCACCGTACTGGGGAAC 2153
Query 26569 GGAGGGCTATGGCGT 26583
||||||||||||||
Sbjct 2152 CGAGGGCTATGGCGT 2138
>seq3640
Length=1178
Score = 134 bits (148), Expect = 3e-27
Identities = 321/479 (67%), Gaps = 10/479 (2%)
Strand=Plus/Plus
Query 4682 GCGCGGGGAAAGCTTGGTGCCCAGTTCGGGCTGGCCGATCAGGATGATGCTGACCAGCTT 4741
|||| ||| | |||| |||||||||||| || || | ||||| |||| | ||| ||
Sbjct 688 GCGCTCGGATAACTTGTCGCCCAGTTCGGGTTGTCCCAGCAGGACGATGGACAGCAGTTT 747
Query 4742 GGTGAAGCCGTCCTCCAACTCACGCAGGCGCTTCAGGTGCTTGAGCGTGGCGATCGGCAG 4801
| |||||||| |||| |||| | ||| || |||||||| | || | ||| |||||
Sbjct 748 TTTAAAGCCGTCTTCCAGCTCAAAGAAGCGTTTGAGGTGCTTTAAGGTCGGGATGGGCAG 807
Query 4802 GCTGTGTGCCTCCTCGATGATCAGAACGTGCTTGAAGCCGG--CGGCATGGCTGACCTTC 4859
|| || || || || | ||| || || || | |||| |||| |||| | ||
Sbjct 808 AGAATGGGCTTCTTCAATCACCAGCACATGGCTGTACCCGGCACGGC--TGCTGTCTTTT 865
Query 4860 AAGGCTCGGTGCAATTGCGCGAAGCGTGCCTCCGG-GCTCGATTTCGGCCGCTCCAGTGG 4918
|| |||||| || || |||||| |||||||| | || ||| | ||||||||
Sbjct 866 AATAGTCGGTGTAACTGACGGAAGCGGGCCTCCGGCGAGCG-TTTAAGTTTTTCCAGTGG 924
Query 4919 CGCAACCGCAGCCATCATGGCTTCGGCAATGTGGGTGACACGCAAGGTCTTGCCCT--TG 4976
|| | | | | || || ||||||| || | | || ||||||||||| ||
Sbjct 925 GGCCAGGGTATGGACAATAGCCTCGGCAAGACTGGCGGCTTTCAGGGTCTTGCCCTGATG 984
Query 4977 GTATCGCTGTCCTCCATGGCCAGGACGTAGGGCTCGATAGGGATCACTGGAGCATTCTCG 5036
| || |||| ||||| ||||| |||||||| || || | ||| || || || ||
Sbjct 985 G--TCATTGTCTTCCATCGCCAGCACGTAGGGTTCAATCACCACCACGGGGGCGTTTTCC 1042
Query 5037 GTGTTCAGGCGGTGCACCAGATCGCGGCGCAGGGTGGATTTACCGGCGCCGGACTCACCC 5096
| | ||| | ||| || || ||||||||| |||||| | |||||| |||||
Sbjct 1043 CGATAAATGCGATCAGTCAGGTCACGACGCAGGGTGCTTTTACCCGAGCCGGATTCACCG 1102
Query 5097 ACCACCGCAAGAAAGCCGTCATGTCGGGCGACGTGATACATCGCCTCGCGGACGTAGCG 5155
| ||||| | ||| || ||| || ||| || |||| |||||| || || || ||
Sbjct 1103 ATAACCGCGATAAAACCACCATAGCGTGCGGTCTGGTACAACGCCTCACGCACATAACG 1161
>seq3079
Length=1278
Score = 129 bits (142), Expect = 1e-25
Identities = 337/507 (66%), Gaps = 8/507 (2%)
Strand=Plus/Plus
Query 4653 CGCTGCACCACCTCGCGTACG-TCACCGTTGCGCGGGGAAAGCTTGGTGCCCAGTTCGGG 4711
||||| ||||| || | ||| ||| | |||| ||| | |||| ||||||||||||
Sbjct 401 CGCTGTACCACTTCCCTGACGGTCAGCAG-GCGCTCGGATAACTTGTCGCCCAGTTCGGG 459
Query 4712 CTGGCCGATCAGGATGATGCTGACCAGCTTGGTGAAGCCGTCCTCCAACTCACGCAGGCG 4771
|| || | ||| | |||| | ||| || | |||||||| |||| |||| | |||
Sbjct 460 TTGTCCCAGCAGAACGATGGACAGCAGTTTTTTAAAGCCGTCTTCCAGCTCAAAGAAGCG 519
Query 4772 CTTCAGGTGCTTGAGCGTGGCGATCGGCAGGCTGTGTGCCTCCTCGATGATCAGAACGTG 4831
|| |||||||| | || | || ||||| || || || || || | ||| || ||
Sbjct 520 TTTGAGGTGCTTTAAGGTCGGTATGGGCAGCGCATGGGCTTCTTCAATCACCAGCACATG 579
Query 4832 CTTGAAGCCGGCGGCATGGCTGACCTTCAAGGCTCGGTGCAATTGCGCGAAGCGTGCCTC 4891
|| | ||||| | ||| | || || | ||||| | || ||||| |||||
Sbjct 580 GCTGTACCCGGCACGGTTGCTCTCTTTTAATACCCGGTGTAGCTGACGAAAGCGGGCCTC 639
Query 4892 CGG-GCTCGATTTCGGCCGCTCCAGTGGCGCAACCGCAGCCATCATGGCTTCGGCAATGT 4950
||| | || ||| | |||||||| || | | | | || || |||||||
Sbjct 640 CGGCGAGCG-TTTGAGTTTTTCCAGTGGGGCCAGGGTATGGACAATAGCCTCGGCAAGAC 698
Query 4951 GGGTGACACGCAAGGTCTTGCCCT--TGGTATCGCTGTCCTCCATGGCCAGGACGTAGGG 5008
|| | | || ||| ||||||| |||| || |||| ||||||||||| ||||||||
Sbjct 699 TGGCGGCTTTCAGGGTTTTGCCCTGATGGT--CGTTGTCTTCCATGGCCAGCACGTAGGG 756
Query 5009 CTCGATAGGGATCACTGGAGCATTCTCGGTGTTCAGGCGGTGCACCAGATCGCGGCGCAG 5068
|| || | ||| || || || || | | ||||| ||| || || |||||
Sbjct 757 TTCAATCACCACCACGGGGGCGTTTTCCCGATAAATGCGGTCAGTCAGGTCACGACGCAG 816
Query 5069 GGTGGATTTACCGGCGCCGGACTCACCCACCACCGCAAGAAAGCCGTCATGTCGGGCGAC 5128
||| |||||| | |||||| ||||| | || || | ||||||| ||| ||||||
Sbjct 817 GGTACTTTTACCCGAGCCGGATTCACCGATAACGGCGATAAAGCCGCCATAACGGGCGGT 876
Query 5129 GTGATACATCGCCTCGCGGACGTAGCG 5155
|| |||| |||||| || || || ||
Sbjct 877 CTGGTACAACGCCTCACGCACATAACG 903
>seq3688
Length=22785
Score = 87.8 bits (96), Expect = 4e-13
Identities = 243/370 (66%), Gaps = 2/370 (1%)
Strand=Plus/Minus
Query 2815 CTCCGCGCGAGCACCTTCCGTCCATTCGTGGAGGCACTCGTCGATCAGCGCCTTGGCCGC 2874
||||| ||| ||| | |||||| || | ||| || || |||| |||||||| ||
Sbjct 864 CTCCGGGCGCGCATTCTGCGTCCACTCCGTCATGCAATCATCAATCAATGCCTTGGCGGC 805
Query 2875 CTGCAGGCGCTCGTCGAAGGCGATGTTGTCGGCCATGGCCCGAATGACCTTGTAGCGACC 2934
||| | ||||| || |||| ||| ||| |||||| || || ||||||||||| ||
Sbjct 804 CTGGATACGCTCATCAAAGGTAATGCGGTCCTGCATGGCGCGCATAACCTTGTAGCGGCC 745
Query 2935 GTCGAAGCTGACCAGAGAGGCGTTGCCCTTCTTGCCTCCTACCTTCGCCTGGTACTGCTC 2994
|| ||| ||| | | ||||| || |||| || || || |||||||||
Sbjct 744 ATCAAAGGAATACAGCGTCACATTGCCTTTTCTGCCGCCACGTTTTACCCCGTACTGCTC 685
Query 2995 GGCCGACAGGGTGATGAAGGCTTCGATATCGCCGAATGTTGCCAGTTTGAAATCCAGCAA 3054
||||||| || || || | ||||||| | || | |||| || || ||||
Sbjct 684 AATCGACAGGTCAATCAATGCCTGGATATCGACAAACGCGCGGTGTTTAAAGTCTCGCAA 625
Query 3055 CGCCTTGTTCAGAGCCTTCCCCTTGGCAACGATCTCCTGCA-CAAGGCGGTCGCGCTCCA 3113
|||| | ||| | | | || || || || | | ||| || ||||||||||
Sbjct 624 TGCCTCATGCAGCGGCCGGGCGCGCGCCACAATATCTTTAACCAACGC-GTCGCGCTCCT 566
Query 3114 GGTCAATGGGCTTGATCATTTCTTCAGGTACCAGGCGCCCCTTGGCGTCCATGCGGTACC 3173
|||||||| || | ||| | || |||| || || ||||||||| | ||| |
Sbjct 565 TATCAATGGGTTTTACCATGGCGTCGGGTATCAATACGCCTTTGGCGTCCTGCCAGTAGC 506
Query 3174 CGGCGGGAAC 3183
||||||| ||
Sbjct 505 CGGCGGGTAC 496
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 122877409743616
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