Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_006646.1 Length=31972 Score E Sequences producing significant alignments: (Bits) Value seq1563 102 2e-17 seq142 95.1 2e-15 seq90 95.1 2e-15 seq422 86.0 1e-12 >seq1563 Length=76377 Score = 102 bits (112), Expect = 2e-17 Identities = 127/165 (77%), Gaps = 8/165 (5%) Strand=Plus/Minus Query 9951 AGAAAAAATTATTAGATAGCT-CGGACTGGGATTCGAACCCAGAACCTTCCGAAGACATG 10009 |||||||||| ||||| | | ||| |||| |||||||||| ||||||||| || | Sbjct 38527 AGAAAAAATTC--AGATATTTTCAGACCGGGAATCGAACCCAGGACCTTCCGATTACCAG 38470 Query 10010 TCGGCTACTCTACC-ATTTGAGCTATCCGG-TCTATACTAAATTTCCTTTCAC-TTATTC 10066 |||| | |||| || | ||||||||||| | |||||| | ||||| |||| ||||| Sbjct 38469 TCGGGTGCTCTTCCCAGCTGAGCTATCCGAATATATACTGA-TTTCCATTCAAATTATT- 38412 Query 10067 TATATACATTAAGCCACACCGTCCATCTTACGGCTAGCATTTTTA 10111 | | | ||| ||||||||||||| || |||||| | |||||||| Sbjct 38411 TGTCAATATTGAGCCACACCGTCCTTCATACGGCAACCATTTTTA 38367 Score = 102 bits (112), Expect = 2e-17 Identities = 127/165 (77%), Gaps = 8/165 (5%) Strand=Plus/Minus Query 9951 AGAAAAAATTATTAGATAGCT-CGGACTGGGATTCGAACCCAGAACCTTCCGAAGACATG 10009 |||||||||| ||||| | | ||| |||| |||||||||| ||||||||| || | Sbjct 38817 AGAAAAAATTC--AGATATTTTCAGACCGGGAATCGAACCCAGGACCTTCCGATTACCAG 38760 Query 10010 TCGGCTACTCTACC-ATTTGAGCTATCCGG-TCTATACTAAATTTCCTTTCAC-TTATTC 10066 |||| | |||| || | ||||||||||| | |||||| | ||||| |||| ||||| Sbjct 38759 TCGGGTGCTCTTCCCAGCTGAGCTATCCGAATATATACTGA-TTTCCATTCAAATTATT- 38702 Query 10067 TATATACATTAAGCCACACCGTCCATCTTACGGCTAGCATTTTTA 10111 | | | ||| ||||||||||||| || |||||| | |||||||| Sbjct 38701 TGTCAATATTGAGCCACACCGTCCTTCATACGGCAACCATTTTTA 38657 >seq142 Length=713011 Score = 95.1 bits (104), Expect = 2e-15 Identities = 126/166 (76%), Gaps = 8/166 (5%) Strand=Plus/Minus Query 9950 GAGAAAAAATTATTAGATAGCT-CGGACTGGGATTCGAACCCAGAACCTTCCGAAGACAT 10008 ||||||||||| ||||| | | ||| ||| |||||||| | ||||||||| || Sbjct 169744 GAGAAAAAATTC--AGATATTTTCAGACCAGGAATCGAACCCGGGACCTTCCGATTACCA 169687 Query 10009 GTCGGCTACTCTACC-ATTTGAGCTATCCGG-TCTATACTAAATTTCCTTTCAC-TTATT 10065 ||||| | |||| || | ||||||||||| | |||||| | ||||| |||| ||||| Sbjct 169686 GTCGGGTGCTCTTCCCAGCTGAGCTATCCGAATATATACTGA-TTTCCATTCAAATTATT 169628 Query 10066 CTATATACATTAAGCCACACCGTCCATCTTACGGCTAGCATTTTTA 10111 | | | ||| ||||||||||||| || |||||| | |||||||| Sbjct 169627 -TGTCCATATTGAGCCACACCGTCCTTCATACGGCAACCATTTTTA 169583 >seq90 Length=2499677 Score = 95.1 bits (104), Expect = 2e-15 Identities = 126/166 (76%), Gaps = 8/166 (5%) Strand=Plus/Plus Query 9950 GAGAAAAAATTATTAGATAGCT-CGGACTGGGATTCGAACCCAGAACCTTCCGAAGACAT 10008 ||||||||||| ||||| | | ||| ||| |||||||| | ||||||||| || Sbjct 1673928 GAGAAAAAATTC--AGATATTTTCAGACCAGGAATCGAACCCGGGACCTTCCGATTACCA 1673985 Query 10009 GTCGGCTACTCTACC-ATTTGAGCTATCCGG-TCTATACTAAATTTCCTTTCAC-TTATT 10065 ||||| | |||| || | ||||||||||| | |||||| | ||||| |||| ||||| Sbjct 1673986 GTCGGGTGCTCTTCCCAGCTGAGCTATCCGAATATATACTGA-TTTCCATTCAAATTATT 1674044 Query 10066 CTATATACATTAAGCCACACCGTCCATCTTACGGCTAGCATTTTTA 10111 | | | ||| ||||||||||||| || |||||| | |||||||| Sbjct 1674045 -TGTCCATATTGAGCCACACCGTCCTTCATACGGCAACCATTTTTA 1674089 >seq422 Length=666177 Score = 86.0 bits (94), Expect = 1e-12 Identities = 124/166 (75%), Gaps = 8/166 (5%) Strand=Plus/Minus Query 9950 GAGAAAAAATTATTAGATAGCT-CGGACTGGGATTCGAACCCAGAACCTTCCGAAGACAT 10008 ||||||||||| ||||| | | ||| ||| |||||||| | ||||||||| || Sbjct 325210 GAGAAAAAATTC--AGATATTTTCAGACCAGGAATCGAACCCGGGACCTTCCGATTACCA 325153 Query 10009 GTCGGCTACTCTACC-ATTTGAGCTATCCGG-TCTATACTAAATTTCCTTTCAC-TTATT 10065 ||||| | |||| || | |||||||||| | |||||| | ||||| |||| ||||| Sbjct 325152 GTCGGGTGCTCTTCCCAGCTGAGCTATCCAAATATATACTGA-TTTCCATTCAAATTATT 325094 Query 10066 CTATATACATTAAGCCACACCGTCCATCTTACGGCTAGCATTTTTA 10111 | | | ||| ||||||||||||| || |||||| | ||| |||| Sbjct 325093 -TGTCCATATTGAGCCACACCGTCCTTCATACGGCAACCATATTTA 325049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 102183984863744