Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_006651.1 Length=19161 Score E Sequences producing significant alignments: (Bits) Value seq928 91.5 2e-14 seq444 87.8 2e-13 >seq928 Length=138870 Score = 91.5 bits (100), Expect = 2e-14 Identities = 130/177 (73%), Gaps = 7/177 (4%) Strand=Plus/Minus Query 3452 CTTGAATCAAAAATAGTATATTACACTACAAGGGCAGAAAGTTGAGATTCCTGCACTGCG 3511 ||||||| |||||||||||||| ||||| |||||||||| |||||| | || Sbjct 30055 CTTGAAT---AAATAGTATATTACGACCCAAGGCCAGAAAGTTGGATTTCCTGGCGTACG 29999 Query 3512 CGCCATG-TGCCCGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGC-TCTCAAA 3569 | ||| | ||||||||||||||| ||| | || |||| | |||||| ||| || Sbjct 29998 TGATATGAAGGCCGAGGCGAAGCCGA-GGCCTTATATCACGTACGGCAGGGCATCT-AAC 29941 Query 3570 TTTCTGCCCATGTAGTGTATACTATTTTTCTTGCTATGCGGTCGAAAGTACGTTAAA 3626 |||||| || ||| |||||||||||||||| | | |||||||||||| || Sbjct 29940 TTTCTGGCCGTGTGTCGTATACTATTTTTCTTCATCCCCACCCGAAAGTACGTTCAA 29884 Score = 84.2 bits (92), Expect = 3e-12 Identities = 110/146 (75%), Gaps = 5/146 (3%) Strand=Plus/Minus Query 4349 AAGAAATAGTATATTACACTACAAGGGCAGAAAGTTTGAGATTCCTGCACTGCGTGCCAT 4408 || |||||||||||||| ||||| ||||||||| || |||||| | |||| || Sbjct 30051 AATAAATAGTATATTACGACCCAAGGCCAGAAAGTTGGA-TTTCCTGGCGTACGTGATAT 29993 Query 4409 -ATGCCCGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGC-TCTCAAATTTCTG 4466 | | ||||||||||||||| ||| | || |||| | |||||| ||| || |||||| Sbjct 29992 GAAGGCCGAGGCGAAGCCGA-GGCCTTATATCACGTACGGCAGGGCATCT-AACTTTCTG 29935 Query 4467 CCCATGTAGTGTATACTAGTTTTCTT 4492 || ||| |||||||| ||||||| Sbjct 29934 GCCGTGTGTCGTATACTATTTTTCTT 29909 >seq444 Length=324625 Score = 87.8 bits (96), Expect = 2e-13 Identities = 122/166 (73%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 3463 AATAGTATATTACACTACAAGGGCAGAAAGTTGAGATTCCTGCACTGCGCGCCATGT-GC 3521 ||||||||||||| ||||| |||||||||| |||||| | || | ||| | Sbjct 133990 AATAGTATATTACGACCCAAGGCCAGAAAGTTGGATTTCCTGGCGTACGTGATATGAAGG 134049 Query 3522 CCGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGC-TCTCAAATTTCTGCCCAT 3580 ||||||||||||||||| | | || |||| | |||||| ||| || |||||| || | Sbjct 134050 CCGAGGCGAAGCCGAGGCCTT-ATATCACGTACGGCAGGGCATCT-AACTTTCTGGCCGT 134107 Query 3581 GTAGTGTATACTATTTTTCTTGCTATGCGGTCGAAAGTACGTTAAA 3626 || |||||||||||||||| | | |||||||||||| || Sbjct 134108 GTGTCGTATACTATTTTTCTTCATCCCCACCCGAAAGTACGTTCAA 134153 Score = 82.4 bits (90), Expect = 9e-12 Identities = 113/150 (75%), Gaps = 6/150 (4%) Strand=Plus/Plus Query 4345 TAGTAAGAAATAGTATATTACACTACAAGGGCAGAAAGTTTGAGATTCCTGCACTGCGTG 4404 |||| |||| ||||||||||| ||||| ||||||||| || |||||| | |||| Sbjct 133983 TAGTTAGAA-TAGTATATTACGACCCAAGGCCAGAAAGTTGGA-TTTCCTGGCGTACGTG 134040 Query 4405 CCAT-ATGCCCGAGGCGAAGCCGAGGGCATCATGGCACGCAGTTCAGGGC-TCTCAAATT 4462 || | | ||||||||||||||| ||| | || |||| | |||||| ||| || || Sbjct 134041 ATATGAAGGCCGAGGCGAAGCCGA-GGCCTTATATCACGTACGGCAGGGCATCT-AACTT 134098 Query 4463 TCTGCCCATGTAGTGTATACTAGTTTTCTT 4492 |||| || ||| |||||||| ||||||| Sbjct 134099 TCTGGCCGTGTGTCGTATACTATTTTTCTT 134128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 61193992290816