Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_006653.1 Length=26062 Score E Sequences producing significant alignments: (Bits) Value seq928 86.0 1e-12 seq444 86.0 1e-12 >seq928 Length=138870 Score = 86.0 bits (94), Expect = 1e-12 Identities = 121/165 (73%), Gaps = 4/165 (2%) Strand=Plus/Plus Query 20671 TTTAACGTACTTTCGACCGCATAGCAAGAAAAATAGTATACACTACATGGGCAGAAATTT 20730 || |||||||||||| | | |||||||||||||||| ||| || |||||| || Sbjct 29884 TTGAACGTACTTTCGGGTGGGGATGAAGAAAAATAGTATACGACACACGGCCAGAAAGTT 29943 Query 20731 GAGA-GCCCTGAACTGCGTGCCATGATGCCCTCGGCTTCGCCTCGGGC-ACATGGCGCGC 20788 ||| |||||| | |||| || | | ||||||||||||||||| | ||| | || Sbjct 29944 -AGATGCCCTGCCGTACGTGATAT-AAGGCCTCGGCTTCGCCTCGGCCTTCATATCACGT 30001 Query 20789 AGTGCAGGAATCTCAACTTTCTGCCCTTGTAGTGTAATATACTAT 20833 | |||||| |||||||||| ||||| |||||||||||| Sbjct 30002 ACGCCAGGAAATCCAACTTTCTGGCCTTGGGTCGTAATATACTAT 30046 >seq444 Length=324625 Score = 86.0 bits (94), Expect = 1e-12 Identities = 121/165 (73%), Gaps = 4/165 (2%) Strand=Plus/Minus Query 20671 TTTAACGTACTTTCGACCGCATAGCAAGAAAAATAGTATACACTACATGGGCAGAAATTT 20730 || |||||||||||| | | |||||||||||||||| ||| || |||||| || Sbjct 134153 TTGAACGTACTTTCGGGTGGGGATGAAGAAAAATAGTATACGACACACGGCCAGAAAGTT 134094 Query 20731 GAGA-GCCCTGAACTGCGTGCCATGATGCCCTCGGCTTCGCCTCGGGC-ACATGGCGCGC 20788 ||| |||||| | |||| || | | ||||||||||||||||| | ||| | || Sbjct 134093 -AGATGCCCTGCCGTACGTGATAT-AAGGCCTCGGCTTCGCCTCGGCCTTCATATCACGT 134036 Query 20789 AGTGCAGGAATCTCAACTTTCTGCCCTTGTAGTGTAATATACTAT 20833 | |||||| |||||||||| ||||| |||||||||||| Sbjct 134035 ACGCCAGGAAATCCAACTTTCTGGCCTTGGGTCGTAATATACTAT 133991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 83276179113600