Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_006657.1 Length=19820 Score E Sequences producing significant alignments: (Bits) Value seq347 192 7e-45 seq797 179 5e-41 seq304 113 6e-21 >seq347 Length=282904 Score = 192 bits (212), Expect = 7e-45 Identities = 758/1168 (65%), Gaps = 47/1168 (4%) Strand=Plus/Minus Query 12227 ATTCTTTCATCAAAGAATGCCATAGCTACAGTTTCTGGGTTTAAATACCACAAATGCATG 12286 |||||| |||||| |||||||| || | ||||| | | | ||||| ||||| | Sbjct 234256 ATTCTTG-ATCAAAAAATGCCATTGCCGCTGTTTCAGAACTGATGTACCATAAATGATTT 234198 Query 12287 CTAAATTTTTTCAATGCCACTTCAGATATTTTAGCATCTGTCGATTGATAATCAATAAGT 12346 | ||||||| | || | ||| ||||||||| ||||| | |||| ||||||| ||||| Sbjct 234197 TTGAATTTTTGTATTGTCGCTTGAGATATTTTGGCATCGATAGATTTATAATCATTAAGT 234138 Query 12347 TCCTTTAAAAATGATAAATCATTATTTGGAGCTTCAGAT-GCGAGAGGACAAGTGAACCA 12405 | || |||||| ||| || | |||||||||| | | | | | || || ||||| Sbjct 234137 TTTTTAAAAAATTGTAAGTCGTGGTTTGGAGCTTGATAAAGTGTGTGGCGTGGTAAACCA 234078 Query 12406 TGCTTTGATATACACTGTAGCAATAAAAACACAAATTTCAGAAACGGATTTGATTAATTT 12465 ||||| | || | |||| |||| ||| | | || ||||||| | ||| | ||| Sbjct 234077 GGCTTTCACGTATATTGTAACAATTAAAGTATATATCTCAGAAAGGAATTATTCTTCTTT 234018 Query 12466 CACCGTCATTTTGAATTGTTTACGAAATAAAAATATTTTTATAGTATATATGGCTTTTGC 12525 | | | | |||||||| || ||||| || | ||||||| | |||||| || || || Sbjct 234017 CGCAGATAATTTGAATTCTTCGAGAAATGAATAAATTTTTAAACAATATATTGCCTTCGC 233958 Query 12526 CATCCACCTAGCGTGGTGGAATGCACCCGGTTTTCGAAATTTTACTTAACTGCAGGGAAC 12585 |||||| | |||||| || ||||| || || ||||| || || || ||| | | Sbjct 233957 CATCCATCGAGCGTGATGAAATGCTCCTGGGAAACGAAACTTCACC--ACCTCAGCTAGC 233900 Query 12586 TTTAC--CAATAAATATCTGAACAAGCTCCAAAAGTTCCCGGTAGTCTTCCCTTGGTTGA 12643 ||| ||||||||| | || |||| | || || || || || || || Sbjct 233899 ACTACGCCAATAAATACTTTCGTGAGTTCCAGGATCTCTTTATAATCATCTCTGGGCTGT 233840 Query 12644 TTTGAATCAAGTTGCTTTTGGATAAAGTGATTAAT-GTCATCAATATGATTTTGTATTTT 12702 || | || | | || || || ||| || ||| ||| |||| |||| | |||| Sbjct 233839 TTGGTTTCCAATGTCTCTTCGACAAAACAATGAATAGTC-TCAACATGACTAGCTATTAC 233781 Query 12703 T-TCTTGCACATACGAATCTTCAATCCCATTAGAATATTGA--CTTATATCAATTTCGCC 12759 |||| ||||| || || || ||| | ||||| | |||| ||| | | Sbjct 233780 GATCTT-CACATTTTCATTGTCCATTCCAGTTTTATATTTAGTCTTACCTCACT--CATT 233724 Query 12760 CCAGCTCTCTCGAAATCTTTTAAATAAAGGTACATCAGGACCTGAGGTTGTAGGTATTTT 12819 |||| | | ||||||| ||||| | | |||||| ||||| || |||| || ||||| Sbjct 233723 CCAGGTACTTTGAAATCTCTTAAAGAGAAGTACATTTGGACCGGAAGTTGCCGGCATTTT 233664 Query 12820 AAGTTCAAAAACA--------CCCCTGAGGATAAGTTCAAATATGTGATGCCTGCAAGGC 12871 || | ||| | || || || || | |||| | |||||||| | || Sbjct 233663 CGCTTTATAAATAAGCAGTTACCTCTAAG-ATCAATTCATAGATGTGATGTCGACATCTG 233605 Query 12872 AAATACAATAGttttttttCAAGCAACCGTTCCAGTGAAACTGCAGCTCCTTTACTTGAT 12931 ||||| | || | | | || | || | ||||| |||||| || || || | | Sbjct 233604 AAATAAAGAAGATCTCTCTCCAACATTCTTTCCAACTGAACTGCTGCACCATTTATACGT 233545 Query 12932 CCTAGATTTGCAGCAGTAGTATCACAGCATAGAGCTTTAATAAAGTCTGGAATTCCCCAA 12991 || || || | ||||| ||||| ||||| | || |||| ||| | |||||| Sbjct 233544 CCCAGGTTAGAGGCAGTTGTATCGCAGCAAACTGCCTTAACTTTGTCACTGAGACCCCAA 233485 Query 12992 TCATTAATAGCGTCAAACATTGCATCAGCTTGCGACTGACCTGTTCCATCATCTAGTACT 13051 ||||| | | | | || || | ||||| ||| ||||||||||| || ||| || Sbjct 233484 TCATTCAGTACATGGTAAATAGCTTGCGCTTGAGACATGCCTGTTCCATCCTCCAGTTCT 233425 Query 13052 GGGATCGCTAATATTTTTTCAATTTGCCCACAACTCAATACAACTGGTAGTCGTTCTTTA 13111 || || | || | || ||||| | ||| | || |||| ||||| || || | Sbjct 233424 GGTATTCCCAAAAGTTGCTCAATATCGCCATTTGTTAAGACAATTGGTAATCTATCA--A 233367 Query 13112 TTTTTTCCAC---TTGAC-GTTTTT--AAAATTTTTCCATCCCAGTGAAGAACACTAGCA 13165 | ||| || || || | |||| || | ||| |||||||| || | |||| | | Sbjct 233366 GTACTTC-ACGTTTTAACAGATTTTGCAACAGTTTGCCATCCCAATGCAAAACAATTGTC 233308 Query 13166 TTCAAGTC--TTGAGTTTTGAAAAGTTCTTTGATTTGTTTTACTTTCTCTTCACGGATTT 13223 | ||||| ||| |||||||| | |||||||| | ||| ||| ||||||| | | Sbjct 233307 T-CAAGTTGATTG-GTTTTGAATAAGTCTTTGATGTTTTTGGTTTTTGCTTCACGTAATG 233250 Query 13224 TCACTCTGCTCCGACGAATAGATGATCTATTTACTATTAATGGATTTA----CGTCAATT 13279 | |||| | || | ||| |||| | |||| || ||| || ||| ||| | | Sbjct 233249 TTTCTCTACAGCGTCTAATGGATGTTTTATTCAC----AATCGAGTTAATATCGTTA--T 233196 Query 13280 TGTAATGATGAACATAAAGCTACGATCACACGTACAGCATTACGATCGCTTATTTTACAA 13339 | | ||||| | ||| ||||| | | ||||||| || | ||| |||||||| || Sbjct 233195 TCACGTCTTGAAC-TGTAGCAACGATTAAATGTACAGCTTTTCTATCACTTATTTTGCAC 233137 Query 13340 TGATCAAAGACCGCTACTAATTTATCAT 13367 || || || ||||||||||| |||| Sbjct 233136 GTGTCTAAAACTGCTACTAATTTTTCAT 233109 >seq797 Length=79762 Score = 179 bits (198), Expect = 5e-41 Identities = 246/344 (72%), Gaps = 0/344 (0%) Strand=Plus/Plus Query 12224 GATATTCTTTCATCAAAGAATGCCATAGCTACAGTTTCTGGGTTTAAATACCACAAATGC 12283 |||| || |||||||||||| |||||||| ||||| || |||| ||||| || || Sbjct 23502 GATAATCCTTCATCAAAGAAGGCCATAGCAGATGTTTCAGGATTTATGTACCATAAGTGA 23561 Query 12284 ATGCTAAATTTTTTCAATGCCACTTCAGATATTTTAGCATCTGTCGATTGATAATCAATA 12343 | || |||||||||| || ||||| |||||||| |||| || ||| |||||||| Sbjct 23562 TTCCTGAATTTTTTCAGTGTCACTTGGGATATTTTCTCATCAGTGGATCGATAATCATAG 23621 Query 12344 AGTTCCTTTAAAAATGATAAATCATTATTTGGAGCTTCAGATGCGAGAGGACAAGTGAAC 12403 |||| || | |||| | ||| | || ||||||| ||| ||| | || |||||| Sbjct 23622 AGTTTTTTCAGAAATTGGAGATCGTGGTTGGGAGCTTGAGAGGCGTGTGGCGCTGTGAAC 23681 Query 12404 CATGCTTTGATATACACTGTAGCAATAAAAACACAAATTTCAGAAACGGATTTGATTAAT 12463 || |||| | || || | ||| ||| ||||||||||||||| ||||| | | Sbjct 23682 CAAGCTTCCACGTATACCAAAATAATGAAAGCACAAATTTCAGAAAGTGATTTCTCTTCT 23741 Query 12464 TTCACCGTCATTTTGAATTGTTTACGAAATAAAAATATTTTTATAGTATATATGGCTTTT 12523 ||| | |||| || ||| |||||| ||||||| | | ||||||| ||||| Sbjct 23742 CGAGACGTTAAAGGAAATTCTTCACGCAATAAATATATTTTCAACGAATATATGCCTTTT 23801 Query 12524 GCCATCCACCTAGCGTGGTGGAATGCACCCGGTTTTCGAAATTT 12567 |||||||| | ||| ||||||| || |||||| |||||||| Sbjct 23802 GCCATCCAGCGAGCATGGTGGACTGGACCCGGCAAACGAAATTT 23845 >seq304 Length=206562 Score = 113 bits (124), Expect = 6e-21 Identities = 243/355 (68%), Gaps = 10/355 (3%) Strand=Plus/Minus Query 12222 ATGATATTCTTTCATCAAAGAATGCCATAGCTACAGTTTCTGGGTTTAAATACCACAAAT 12281 |||||| | ||||| || || || | |||||| ||||| || ||||||||| | |||| Sbjct 159919 ATGATACCTTGTCATCGAAAAAAGCTAAAGCTACTGTTTCAGGATTTAAATACTATAAAT 159860 Query 12282 GCATGCTAAATTTTTTCAATGCCACTTCAGATATTTTAGCATCTGTCGATTGATAATCAA 12341 | | || |||||||||| || || || |||| ||| ||| | | || || | Sbjct 159859 GATTACTGAATTTTTTCACTGTAACATCTGATAGTTTCTTATCAATTGCTTTGTATTTGT 159800 Query 12342 TAAGTTCCTTTAAAAATGATAAATCATTATTTGGAGCTTCAGATGCGAGAGGACAAGTGA 12401 ||||| || | ||| ||| |||| ||| |||||| | | ||| | ||| | |||| Sbjct 159799 GAAGTTTTTTCATGAATTGTAAGTCATGATTCGGAGCTGCTGTTGCTACGGGAGAGGTGA 159740 Query 12402 ACCATGCTTTGA--TATACACTGTAGCAATAAAAACACAAATTTC--AGAAACGGATTTG 12457 | || |||| | |||| || || ||||||||||||| |||| || | | | Sbjct 159739 ATCAGGCTTCAACGTATA-ACATTA-CAATAAAAACACAGGTTTCCTGGATAGCCACT-- 159684 Query 12458 ATTAATT-TCACCGTCATTTTGAATTGTTTACGAAATAAAAATATTTTTATAGTATATAT 12516 | || || | | || |||| ||||| | || |||| |||||||||| | | ||| Sbjct 159683 ACTACTTCTGAGCG-CATTGAAAATTGGTCTCGGAATAGGAATATTTTTAAACAGTCTAT 159625 Query 12517 GGCTTTTGCCATCCACCTAGCGTGGTGGAATGCACCCGGTTTTCGAAATTTTACT 12571 ||||| | |||||| | ||||| ||||| | ||||| | |||||||| ||| Sbjct 159624 AGCTTTCGACATCCAACGTGCGTGATGGAAAACGCCCGGATAACGAAATTTAACT 159570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 63302695539072