Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq3127 214 3e-50 >seq3127 Length=15394 Score = 214 bits (236), Expect = 3e-50 Identities = 566/858 (66%), Gaps = 41/858 (5%) Strand=Plus/Minus Query 193431 AAAAAAGCATTAATAACAGGCATAACTGGGCAGGATGGATCTTATCTTGCCGAGTTTCTT 193490 |||| ||||||| | || || | || ||||| |||||||| ||||| || |||||| | Sbjct 2285 AAAATAGCATTAGTTACTGGAGTTACAGGGCAAGATGGATCATATCTGGCTGAGTTTTTA 2226 Query 193491 TTGTCTAAGGGATATGAAGTTCATGGTATTGTAAGGA-GAAGTTCCCTAATCAATACTCA 193549 || || || |||||||||||||| ||| || | | || | | | |||||| | Sbjct 2225 TTAGAAAAAGGGTATGAAGTTCATGGC-TTGAAACGCCGTTCATCACAATTTAATACTAA 2167 Query 193550 TAGAATTGATCATATCTATGA-GA---------AGAT-----------CACTCTTCATTA 193588 | |||| ||||| || | || |||| || |||||| | Sbjct 2166 CCGTGTTGACCATATTTACCAAGATCGCCATTCAGATAAACAAAATTTCATTCTTCACAA 2107 Query 193589 TGGAGATCTAACTGATCCTGTAAATGTTATGGGTGTCATTAGGGCAGTTGAACCTGCTGA 193648 ||| ||||| |||||| || ||| |||| || | || | | | |||| | || Sbjct 2106 TGGTGATCTGACTGATTCTTCAAACCTTATTAGTCTTGTTCAGAAAATACAACCAGACGA 2047 Query 193649 GATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGCCAGAGTATAC 193708 || |||||||||||||||||| || ||| ||||| |||||| ||||| ||||| Sbjct 2046 AATATATAATCTTGGTGCTCAATCACACGTTGCTGTTTCTTTTGAGTCCCCAGAATATAC 1987 Query 193709 TTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGTATGTTGGGAAT 193768 || |||||||||| | ||||| | ||| || | || || | | || ||| Sbjct 1986 AGCTGATGTTGATGCGATGGGAACATTAAGATTATTAGAGGCGATAAGAATT-----AAT 1932 Query 193769 GG----AGAAAGATGTTCGCAT-CTATCAGGCATCTACCAGCGAACTGTATGGTGGTGTT 193823 || || || | | || ||||||||| || || || || ||||| || Sbjct 1931 GGCCTTAGTAATAAGACAAAATTCTATCAGGCTTCAACATCTGAGCTATATGGCTTAGTA 1872 Query 193824 CTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGTGTAGCA 193883 | || | ||| | | ||| || || || ||| | || | ||||| || | || ||| Sbjct 1871 CAAGAAATTCCTCAAAGAGAGACAACTCCGTTTTACCCTAGATCTCCATACGCGGTCGCA 1812 Query 193884 AAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCTAGT 193943 ||||| |||| |||||||| | || |||||||||||||||||| || | ||| || Sbjct 1811 AAGTTATATGCATATTGGATTACTGTAAACTATCGTGAGTCATATGGAATCTATGCTTGT 1752 Query 193944 TCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAG 194003 ||||| || |||||||| ||||||||| | | ||||| || |||||||| || || Sbjct 1751 AACGGTATACTTTTCAATCATGAATCTCCACGTCGTGGTGAAACTTTTGTAACACGAAAA 1692 Query 194004 ATTACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTATCTTGGTAAT 194063 ||||| | | | |||| || || ||| | | || |||||| | |||||| Sbjct 1691 ATTACTCGCGCAATTGCTAATATTTCCCAAGGAATTGAACAGTGCCTTTATTTAGGTAAT 1632 Query 194064 CTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTT--GAAGCGATGTGGTTAA 194121 | | || | |||||||| |||||||| ||||||||| | || | ||| | | Sbjct 1631 ATGGACTCTTTACGTGATTGGGGCCACGCAAAAGATTATGTTCGCATGCAA--TGGATGA 1574 Query 194122 TGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAACAGTATTCTGTTA 194181 || | ||||| ||| | || || |||| ||| |||||||| || |||| ||||||| Sbjct 1573 TGCTCCAACAAGATCAGCCTGAAGATTTTGTCATTGCTACTGGCAAACAAATTTCTGTTC 1514 Query 194182 GAGACTTTGT--GAATGAAGCAGCACCCTATTTTGGTTTTAAACTAGAATGGATGGGTGA 194239 | || ||||| | ||| | || | |||| || |||| |||| | || || Sbjct 1513 GTGAATTTGTTCGCATG--TCTGCTAAAGACGTTGGACTTGAACTTGAATTTAGCGGCGA 1456 Query 194240 AGGTGAAGACGAGATTGC 194257 ||||| |||||| ||||| Sbjct 1455 AGGTGTAGACGAAATTGC 1438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807515145262080