Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_007023.1 Length=180500 Score E Sequences producing significant alignments: (Bits) Value seq2351 280 2e-70 seq2333 170 2e-37 seq3532 149 7e-31 >seq2351 Length=10305 Score = 280 bits (310), Expect = 2e-70 Identities = 558/813 (69%), Gaps = 29/813 (4%) Strand=Plus/Plus Query 41602 TTCTCTTACGCTGGCGTACAGCAGTTGATCGGGAAATATCTGTTGCAGGATCGCACCAAC 41661 ||||||||||||| || |||||||| |||||||||||| |||| | ||| || | Sbjct 2394 TTCTCTTACGCTGCGGTCAAGCAGTTGGAAGGGAAATATCTGGTGCAAAACCGCGTCACC 2453 Query 41662 GGTGACATCTACGAAACACCGCAATATGCGTTTATGCTGATTGCTATGTGTCTGCA-TCA 41720 |||||||||||||||| | || | | || | | ||| | ||| || ||| || Sbjct 2454 GGTGACATCTACGAAAGCGCCCAGTTTCTGTATGTACTGGTGGCTGCCTGCCTGTTCTCC 2513 Query 41721 GGACGAAC-CGCGAACCCTGAGCGCATTTAATCATGTTGTCGATTTCTACAACGCAATTT 41779 || | |||||| | | | ||| ||| || || ||| |||| |||| Sbjct 2514 GGTTACCCGCGCGAAACGCGTCTGGATTACGTCAAA----CGCTT-CTATGACGCGATTT 2568 Query 41780 CGGATCGT-AAGCTGTCGTTACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGT 41838 | | | | ||| | || || || ||||| || ||| | || |||||||| || || ||| Sbjct 2569 CT-ACCTTCAAGATTTCATTGCCAACGCCGATCATGTCCGGCGTGCGTACCCCAACCCGT 2627 Query 41839 CAGTTTTCCAGTTGCGTAGTGATTGAATCAGGTGATTCACTGGGTTCTCTGAATGCTGTA 41898 ||||| | ||||| ||||||| | || || |||| ||| | || || Sbjct 2628 CAGTTCAGCTCCTGCGTGTTGATTGAGTGCGGCGACAGCCTGGATTCCATTAACGCC--- 2684 Query 41899 ACCTC---TGCGATCGTGAAGTATATTTCACAACGCGCGGGTATCGGTGTTAATGCTGGA 41955 ||||| ||| |||||||| || ||||||| || || |||||||| |||| || || Sbjct 2685 ACCTCCAGTGCTATCGTGAAATACGTTTCACAGCGTGCCGGTATCGGCATTAACGCCGGT 2744 Query 41956 CACATTCGCGCAATGGGTTCTAAAATCCGTGGTGGTGAAGCAGTACATACAGGCGTGATC 42015 | ||||| || ||||| || || |||||||||||| | ||||| ||| || Sbjct 2745 CGTATTCGTGCGCTGGGTAGCCCGATTCGCGGTGGTGAAGCATTCCATACTGGCTGTATT 2804 Query 42016 CCGTTCTGGAAACATATTCAGACAGCGGTTAAATCCTGTTCACAAGGTGGCGTTCGTGGT 42075 || |||| |||||| | ||||| || || |||||||| ||||| || || || || || Sbjct 2805 CCTTTCTATAAACATTTCCAGACCGCAGTGAAATCCTGCTCACAGGGCGGTGTGCGCGGC 2864 Query 42076 GGTGCTGCAACGTTGTATTATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTG 42135 || || |||||||||| ||| ||| | |||||| ||||||| |||| ||||||||| ||| Sbjct 2865 GGAGCGGCAACGTTGTTTTACCCGCTGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGCTG 2924 Query 42136 AAAAACAACAAAGGTGTTGAGAATAACCGTATTCGTCACCTGGATTATGGCGTTCAGCTT 42195 || |||||| || || || ||||| | |||||||| ||||| ||||| ||| | Sbjct 2925 AAGAACAACCGTGGCGTGGAAGGCAACCGCGTGCGTCACCTCGATTACGGCGTGCAGTTG 2984 Query 42196 AACGATTTGATGTATAAGCGTTTAATCAATAACGATTACATCACACTGTTCAGCC---CT 42252 ||| | |||||||| |||| | |||| | | ||||| |||||||||| || Sbjct 2985 AACAAGCTGATGTATCAGCGCCTGGTCAAAGGACAAGAAATCACCCTGTTCAGCCCCTCT 3044 Query 42253 GACGTTGCAAATGATCGCCTGTATGATGCTTTCTATCAAGCTGATCAGACTGAGTTCGAA 42312 ||||| | |||||||||| || || | || || |||||| |||||||||| Sbjct 3045 GACGTACC------CGGCCTGTATGACGCATT-TTTC--GCCGATCAGGATGAGTTCGAA 3095 Query 42313 GAACTCTAT-ACCAGTTTGGAAAAAGACCCAACGGTACGCAAGAAACGCATTAAAGCAGC 42371 | ||| | |||| | ||||||||| | | ||||||||| ||| ||||| | Sbjct 3096 CGCTTATATCAGCAGTAT-GAAAAAGACGACAGCATCCGCAAGAAATCCATGAAAGCGGT 3154 Query 42372 AGACTTATTCCAGTTGCTTGTTCAGGAACGCGC 42404 || | ||| | || | | || |||||||| Sbjct 3155 CGATCTGTTCTCGCTGATGATGCAAGAACGCGC 3187 Score = 129 bits (142), Expect = 7e-25 Identities = 360/539 (67%), Gaps = 24/539 (4%) Strand=Plus/Plus Query 44086 CTTTATCTGTGTATGCACGCTGTCAACGCTCTGGAAGCGATTCGTTTCTATGTCTCGTTT 44145 ||||||||||| || |||||||| |||||||| || ||||| |||||| || Sbjct 4919 CTTTATCTGTGCCTGATGAGCGTCAACGCGCTGGAAGCCATCCGTTTTTATGTCAGTTTC 4978 Query 44146 ACCTTTACGTTCAACTTTGCCGAACAGGGCAAGATGGAAGGTAACGCAAAGATCATGCGT 44205 ||| | ||| ||||||||||| | |||||| || ||||| || || || Sbjct 4979 GCCTGCTCATTCGCCTTTGCCGAACGCGAACTGATGGAGGGCAACGCCAAAATTATCAAA 5038 Query 44206 CTGATTGCCCGTGATGAAGCACTTCATCAGAAAGGTACTCAAAGCAAGATCCGACTCTG- 44264 ||||| ||||| |||||||| || || | || ||||| || ||| | || |||| Sbjct 5039 CTGATCGCCCGCGATGAAGCGCTGCACCTGACCGGTACCCA--GCATATGCTGAATCTGA 5096 Query 44265 -GCAGATGGGTAAAGATGACCCAGAAATGGCAGAAATCGCGTATCAGTACGAAGAAGAA- 44322 || || | || || || ||||||||| ||||||| | || | || | ||| Sbjct 5097 TGCGTTCCGGCCAGGACGATCCGGAAATGGCACAAATCGCCGAAGCGTGCCAACAGGAAT 5156 Query 44323 GCAACA--CAGATTTTCCTCGAAGTTTACGAGCAGGAAAAAGAATGGGCTGAACACTTAT 44380 || || | | || | || | | || ||||||| ||||| ||||| ||| || | | Sbjct 5157 GCTACGACCTGTTTGTGCTGGCTGC--AC-AGCAGGAGAAAGAGTGGGCGGAATACCTGT 5213 Query 44381 TCAGTATTGGT--GATGTTGACGGCGTGACACTGAAAAGTACAATC---GCCTATA--TC 44433 || | ||| |||| | ||| ||| || |||| ||| || ||| || | Sbjct 5214 TCCGCGACGGTTCGATGATT--GGCCTGA-AC---AAAG-ACATTCTCTGCCAGTACGTT 5266 Query 44434 GAACACTTAACCGACCAACGTATGCGAGCGGTTGGGTTACAGTCTCCGTTTAAACCGAGT 44493 ||| || | ||| | || |||| |||||| ||| | | | ||||| || || | Sbjct 5267 GAATACATCACCAATATCCGCATGCAAGCGGTAGGGCTGCCCTTGCCGTTCCAAACGCGC 5326 Query 44494 CCTAACCCGTATCCGTGGATGAACAAATGGTTGAAGTCTGACAACGTTCAGGTAGCCCCG 44553 |||||||| |||||||| || ||| || ||||||||||| ||||| || ||| Sbjct 5327 ACTAACCCGATCCCGTGGATTAATGCCTGGCTGGTCTCTGACAACGTGCAGGTTGCTCCG 5386 Query 44554 CAAGAGGTTGAAGTAAGTTCTTACCTGGTTGGCAACCTCAACACCGAGATCAGCGACGA 44612 ||||| || ||||| |||||||| ||||| ||| | | | | ||||||| || ||| Sbjct 5387 CAAGAAGTGGAAGTGAGTTCTTATCTGGTCGGCCAAATTGATTCTGAGATCAACGCCGA 5445 Score = 123 bits (136), Expect = 3e-23 Identities = 289/434 (67%), Gaps = 8/434 (2%) Strand=Plus/Plus Query 42953 ATTGCGATTGGGAATGGTTGCGCGGCGAAATCAAAAAATATGGCTTGCGTAACTCAACTC 43012 ||| |||||||||| |||||| | ||||||| | | || | |||||||| || | Sbjct 3754 ATTACGATTGGGAAGCACTGCGCGACAGTATCAAAACACACGGTCTACGTAACTCCACGC 3813 Query 43013 TTTCCGCTTTAATGCCATGTGAGAGTAGTTCTCAAGTAAGCAACTCAACAAACGGGATTG 43072 | || || || ||||| | || | || ||| | |||| | || ||||| || | Sbjct 3814 TCTCTGCGTTGATGCCGTCGGAAACCTCGTCACAAATTTCCAACGCCACCAACGGTATCG 3873 Query 43073 AACCGCCTCGCGGTCCTGTGAGTGTGAAATCTTCGAAAGAAGGTTCATTCAACCAGGTAG 43132 |||| || ||||||| | ||| | || | || ||||| || || |||||| | Sbjct 3874 AACCACCACGCGGTCACATCAGTATCAAGGCGTCAAAAGACGGCATTTTGCGCCAGGTGG 3933 Query 43133 TACCGAACCAGAACGATCAGATTGATTTCTATGATTATCTCTGGACAATGGCAAAACGCG 43192 | ||| | | | | || ||| ||| || | || ||| |||| | || Sbjct 3934 TGCCGGATTACGAAACCCTGAAGGATGCCTACGAATTACTGTGGGAAATGCCGAAC---- 3989 Query 43193 GTAATAAAGGTTATCTGTCTCATGTTGCTGTTATGCAGAAGTTTGTTGATCAAGCGATCT 43252 ||| | || || ||| | |||| | |||||||||||||| ||||| || || | Sbjct 3990 --AATGACGGCTACCTGCAACTGGTTGGGCTGATGCAGAAGTTTGTCGATCAGGCTATTT 4047 Query 43253 CTGCAAACACCAACTATGATCCGGCTAACTTCCCAGATGGTAAAGTGAAATCTGAAACCA 43312 |||| ||||||||||| |||||||| |||||| || |||||| |||||| Sbjct 4048 CTGCCAACACCAACTACGATCCGGCGCGCTTCCCGTCAGGAAAAGTG-CCGATGAAACAG 4106 Query 43313 TCATTGA-TGACCTGCTTTATGCGAACTACTACGGCGTGAAAACTCTGTATTATCACAAC 43371 | ||| |||| ||||| || | | | ||| ||||||| ||||||||||| ||| Sbjct 4107 TTGCTGACTGACTTGCTTACCGCCTATAAGTTCGGGTTGAAAACGCTGTATTATCAAAAC 4166 Query 43372 ACCCGCGACGGTGC 43385 ||||| |||||||| Sbjct 4167 ACCCGTGACGGTGC 4180 >seq2333 Length=8475 Score = 170 bits (188), Expect = 2e-37 Identities = 786/1226 (64%), Gaps = 72/1226 (6%) Strand=Plus/Minus Query 155619 GCCCGTGCATACATCGAATATCGTCACGATCGCGATATTGCCCGTGAACAGAAAAGTAAG 155678 || ||| | ||||| || || ||||||||||| ||| | ||||| ||||| | | Sbjct 5737 GCACGTACCTACATTGAGTACCGTCACGATCGTGATGTCGCCCGCGAACA----ACGCGG 5682 Query 155679 CTGTTCAAA----GATATCTCCGGTATGGTGAATCTGTCCAACAAAGAGATCACCAACGA 155734 | ||| || || || ||| |||| | | | ||||| | | |||||| Sbjct 5681 CCGTTTGAATCAGGAAATTCGTGGTCTGGTTGAACAGAGCAACATGGCCCTGCTCAACGA 5622 Query 155735 GAACGCGAACAAACACGCAAGGGTATTCCCGACACAGCGCAATTTGCTGGCGGGTATTGT 155794 |||||| |||||| || | ||| |||| || |||||| | ||||||| ||||| || Sbjct 5621 GAACGCCAACAAAGACAGTAAAGTAATCCCTACCCAGCGCGACCTGCTGGCCGGTATCGT 5562 Query 155795 AGCGAAGCATTTCGCCCGTAATCATATCCTTCCGAAACATATCGTAGAAGCGCATGACTC 155854 || ||||| | |||| | |||||||| ||| | | || || ||||| Sbjct 5561 TGCCAAGCACTACGCCAAGCAACATATCCTGCCGCGCGACGTGGTGCTTGCTCATGAACG 5502 Query 155855 CGGCGACATCCACTATCATGATCTGGATTACAGCCCGTTC-ACGCCATACACAAACTGCT 155913 ||| || || ||||| || |||||||| ||| ||||||| | | || | ||||| Sbjct 5501 CGGTGAAATTCACTACCACGATCTGGACTACTCCCCGTTCTTCCCGATGTTC-AACTGTA 5443 Query 155914 GTCTGGTGGATTTGAAAGGTATGCTGGCTAATGGCTTCAAGATGGGTAACGCAGACATCG 155973 ||| | || | |||| ||| || | || || ||||||||||||||||| || || | Sbjct 5442 TGCTGATCGACCTTGAAGGCATGTTGACCAAGGGGTTCAAGATGGGTAACGCGGAGATTG 5383 Query 155974 AACCCCCGAAATCAATCGGTGTTGCGACTGCTCTTATGGCACAGATCACCGCACAGATTG 156033 | || || ||||| ||| ||||| || | | ||| || |||| ||| ||| | | Sbjct 5382 AGCCACCAAAATCCATCTCAACCGCGACAGCAGTGACGGCCCAAATCATCGCGCAGGTGG 5323 Query 156034 CTTCTCACCAGTACGGCGGGACAACCTTTGCAAACG--TGGATAAAGTGCTGGCTCCGTA 156091 | ||| |||||||| || ||| || || || | ||| || | ||||| |||| Sbjct 5322 CAAGCCACATCTACGGCGGCACCACCATT--AACCGTATCGATGAAATTCTGGCACCGTT 5265 Query 156092 TG---CAGAAATGACATATGAAAAGCATGTTAAGGATGCTAAAAAGTATAAAATTTCGTT 156148 | | | | | | || ||||||| | |||| | ||| | ||| | Sbjct 5264 CGTCACCGCCA-GCCTTA--AAAAGCACCGGGAAACTGCTGATGAGTGGCACATTCC--- 5211 Query 156149 AGAT-CGTA--CATATGCGATGGAAAAGACTGAAAAAGATGTG-TTTGATGCTTTCCAAT 156204 ||| || | | ||||| || || |||||||| ||| | || || ||||| | Sbjct 5210 CGATGCGGACGCCTATGCACTGTCTCGTACCGAAAAAGA-GTGCTACGACGCCTTCCAGT 5152 Query 156205 CGTATGAATACGAAGTTAACACGCTGCATACTGCCAACGGACAAACACCTTTCGTTACTA 156264 || ||||| ||||| || |||||||| || ||||| || || ||||| || || || Sbjct 5151 CGCTGGAATATGAAGTAAATACGCTGCACACCGCCAATGGTCAGACACCGTTTGTCACCT 5092 Query 156265 TTACTTTCGGTACTGGTAC-----GGGAATGTTTGAACGGATGATCCAGAAAGCTATTCT 156319 || ||||||| || || |||||| || |||| ||| || | || || Sbjct 5091 TTGGTTTCGGTCTCGGCACCCGTTGGGAAT-----CGCGCCTGATTCAGCAATCCATCCT 5037 Query 156320 GAAAAACCGTATCCGTGGCCTGGGTAAAAAAGGTATTACTCCGGTATTCCCTAAACTGGT 156379 | ||||| || || ||||| ||||| ||| || |||| ||||| ||||||| Sbjct 5036 GCGCAACCGCATTGCCGGTCTGGGCAAAAACCGTAAAACCGCGGTGTTCCCCAAACTGG- 4978 Query 156380 TATGTTC---ATGGAAAAAGGCATTAACCTTGATCCAGAGGATCGCAACTATGACATCAA 156436 ||||| || | || | || | | | | |||| |||||||||||||| Sbjct 4977 --TGTTCGCTATCCGCGACGGTGTCAATCACAAGGCTGCCGATCCGAACTATGACATCAA 4920 Query 156437 ACAACTGGCTCTGGAATGCGCTTCAAAACGTATGTACCCAGATATCATTAGTGCATATAA 156496 |||||||| ||||| ||||| || || |||||||| ||||| | | | || | Sbjct 4919 GCAACTGGCACTGGATTGCGCCAGCAAGCGGATGTACCCGGATATTCTCAAT---TACGA 4863 Query 156497 TAACCGTCGCATCACTGGTTCTAGCGTTCCTGTA--TCTCCTATGGGTTGTCGCAGTTTC 156554 | | || | | | |||| | | || | || | |||||||| || ||||||||| Sbjct 4862 TCA-GGTGG--TTA-AGGTTACCG-GCTCGTTTAAGACGCCTATGGGCTGCCGCAGTTTC 4808 Query 156555 CTTAGTGTGTGGCATGATGATAACGGTAATGAAGTTCTGGATGGACGTAATAACCTGGGT 156614 ||| | |||| |||| || | || || | | | ||||| || || ||||| || Sbjct 4807 CTTGGCGTGT---ATGAGGAAGAGGGCAAGCAGATCCACGATGGTCGCAACAACCTCGGG 4751 Query 156615 GTGGTGACAATCAACCTCCCGCGTATTGCTCTTGAAGCACAATCGCAGGAAGATGAAGAC 156674 || | | ||||||| ||||| || || || |||||| ||| || | || Sbjct 4750 GTAATCAGCCTCAACCTGCCGCGCATCGCGCTGGAAGCA---------GAACATAACGAA 4700 Query 156675 GCACATGACGCATTCTGGCGTATCCTTGATGAACGTCTGGAACTGTGCTTTGAAGCCCTG 156734 | | | |||||| | | ||| | |||||| ||||| |||| || Sbjct 4699 GAGCGT------TTCTGGAACCTGTTGGATAATCGTCTGCAACTGGCGAAAAAAGCGTTG 4646 Query 156735 ATGACTCGCATCGATAGCCTACGCGGTGTTAAAGCCAGTGTAGCCCCGATCCTGTACACG 156794 ||||| |||||||| | | || |||||| |||| || || |||||||| | | Sbjct 4645 ATGACGCGCATCGAGCGTTTGGAAAACGTCAAAGCCCGTGTCGCTCCAATCCTGTATATG 4586 Query 156795 GAAGGTGCATTCGGTGTTCGTCTGAA 156820 ||||| || | ||||| || ||||| Sbjct 4585 GAAGGCGCCTGTGGTGTACGCCTGAA 4560 >seq3532 Length=11862 Score = 149 bits (164), Expect = 7e-31 Identities = 145/187 (78%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 51920 GTTGAAGGTGGACAGCACCTAAACGTGAATGTGCTACGTCGCGAAACCCTGGAAGATGCT 51979 || ||||| || || ||||| |||||||| || || || || ||||| ||||||||||| Sbjct 11335 GTGGAAGGGGGGCAACACCTGAACGTGAACGTTCTGCGCCGTGAAACGCTGGAAGATGCG 11276 Query 51980 GTGAAACATCCTGAGAAGTACCCACAGTTAACGATCCGCGTTTCAGGTTATGCAGTTCGC 52039 || ||||| || || || ||||| ||||| || ||||| ||||| ||||||||||| || Sbjct 11275 GTAAAACACCCGGAAAAATACCCGCAGTTGACCATCCGTGTTTCTGGTTATGCAGTGCGT 11216 Query 52040 TTTAATGCACTGACTCCAGAACAACAGCGCGACGTTATCGCCAGAACCTTTACGGAAAGC 52099 || || || |||| |||||||| || || ||||| || | | || || || |||||| Sbjct 11215 TTCAACTCATTGACCCCAGAACAGCAACGTGACGTGATTACGCGTACTTTCACTGAAAGC 11156 Query 52100 ATGTAAT 52106 |||||| Sbjct 11155 CTGTAAT 11149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577443357388800