Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq10 104 2e-17 seq97 93.3 4e-14 >seq10 Length=2352850 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | ||||| || ||||| ||||| ||| | |||||| | ||| | ||| || Sbjct 819890 AATGCAGATTTTTGTTAAGACATTGACTGGCAAAACCATCACCCTGGAAGTCGAAGCATC 819949 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||| || || | || ||| || ||| || |||||||| || || || ||||| Sbjct 819950 TGACACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCAGATCA 820009 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||| | | || | || || |||||| | || || | |||| | ||||| || Sbjct 820010 ACAGCGTTTGATCTTCGCTGGTAAACAATTGGAGGACGGAAGAACTCTTTCAGACTACAA 820069 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 |||||||||||| || || ||||||| || || | ||| ||||||||| Sbjct 820070 CATTCAAAAAGAGTCCACCCTCCATCTCGTTCTTCGTCTTCGAGGAGGAA 820119 Score = 93.3 bits (102), Expect = 4e-14 Identities = 168/246 (68%), Gaps = 5/246 (2%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || ||||| ||||||| || | ||||| ||||| |||| | Sbjct 821030 AATGCAGATTTTCGTCAAAACCCTAACTGGCAAGACCATCACACTCGAAGTAGAGGCCTC 821089 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||| || || | ||||| || || ||||| || || || ||||| ||||| Sbjct 821090 TGACACAATTGAAAACGTCAAGGCCAAAATCCAGGACAAGGAGGGCATTCCTCCAGATCA 821149 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||| | | || | | || |||||||| ||||||| ||||| | |||||| || Sbjct 821150 ACAGCGTTTGATCTTTGCTGGTAAACAACTGGAAGATGGTAGAACTTTGTCCGACTACAA 821209 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG-----AAAAATA 27002 ||| || ||||||||||| |||| |||| || | || ||||| || |||| || Sbjct 821210 CATCCAGAAAGAATCTACACTCCACTTGGTTCTTCGTCTCAGAGGTGGCTTCTAAAATTA 821269 Query 27003 TGATTA 27008 | |||| Sbjct 821270 TCATTA 821275 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || || |||||||| | |||||| | || | || | Sbjct 819663 ATGCAGATCTTCGTGAAGACGTTGACTGGAAAGACCATCACCCTGGAGGTCGAGGCCTCT 819722 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | |||||| ||||| |||||||| || || ||||| || || Sbjct 819723 GACACAATTGAAAATGTCAAAGCCAAGATCCAGGACAAAGAGGGAATCCCTCCAGACCAG 819782 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | || || | || || || || | ||||||| ||| | || ||||| ||| Sbjct 819783 CAACGTCTGATCTTCGCTGGTAAGCAGTTGGAAGATGGCCGAACCCTCTCAGACTACAAC 819842 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 |||||||| ||||| ||| | || ||||||| | ||| | || |||| Sbjct 819843 ATTCAAAAGGAATCCACTCTGCACTTGGTCCTACGTCTTCGTGGTGGAA 819891 >seq97 Length=1294141 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 71655 AATTCGAGCATAATCAAACGCATGATGAACTATGGAATGCTGCTCAGCGACAGCTACGCA 71714 |||||||| | || ||||| || || | |||||||| || ||| ||||| | Sbjct 592726 AATTCGAGAAGTCACAGACGCACGAGGACTTGTGGAATGCAGCCCAGAATCAGCTGGTGA 592667 Query 71715 ATGAGGGTAAAATTCACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGA 71774 || || |||||||| |||| | | | ||||| ||||| || || ||||| || |||| Sbjct 592666 GGGATGGAAAAATTCATGGATTCATGAGGATGTATTGGGCGAAGAAAATTCTGGAATGGA 592607 Query 71775 CTCAAACTCCCGAGCAGGCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTCG 71834 || ||| || ||| | || |||| | || || || || ||||| | ||||| | | Sbjct 592606 GTCCAACGCCAGAGGATGCTCTCGCCTGGTCAATCTACCTCAACGACAAGTACAGCATGG 592547 Query 71835 ACGGTCGCGATCCTAACGGTTATGTCGGT 71863 | || | |||||||||||||| || ||| Sbjct 592546 ATGGCAGGGATCCTAACGGTTACGTTGGT 592518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478638658344960