Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq232 205 6e-48 seq434 131 1e-25 seq445 122 6e-23 seq676 100 2e-16 seq2741 96.9 2e-15 seq14 86.0 4e-12 seq10 86.0 4e-12 >seq232 Length=1000471 Score = 205 bits (226), Expect = 6e-48 Identities = 307/434 (71%), Gaps = 4/434 (1%) Strand=Plus/Plus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 ||||| | ||| || || ||||| || ||| || || ||||| ||||| || ||||| Sbjct 834684 ATGGGTAGCCTAAATGTGAATCGCAACGTGAGCGATGCATTCTATCGCTATAAGATGCCT 834743 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 |||||| || || || ||||| || ||||| ||||||||||| || || ||||||||| Sbjct 834744 CGCATCCAGGCTAAAGTTGAGGGCAAAGGAAATGGTATTAAAACAGTTATAGTCAACATG 834803 Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGC 6341 || || || ||||| | || | ||||| || || ||||| |||| ||| || || Sbjct 834804 GTGGACGTGGCAAAGGCTATTGGCAGGCCTGCGACATATCCGACAAAATTTTTTGGATGT 834863 Query 6342 GAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCG 6401 ||| | ||||| || ||||| ||| || || || || || ||||| || ||||| ||| Sbjct 834864 GAATTGGGCGCACAAACGCAATTTAATTTTAAGAATGAACGTTTCATTGTCAACGGCTCG 834923 Query 6402 CATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGT 6461 ||| | | | || || ||||| || | || || ||||| | |||| |||||||||| Sbjct 834924 CATGAAGCAACTAAACTCCAGGATTTGTTGGATGGTTTTATAAGGAAGTATGTGCTGTGT 834983 Query 6462 CGGGAATGCGATAACCCGGAGACCGAGCTTATTGTGTCTACCAAGAGAAACACCATCTCT 6521 | | || ||||| |||||||| || || | || | | |||| | |||||||| Sbjct 834984 CCAGCTTGTGATAATCCGGAGACTGAACTGTTGGTTAGTGCTAAGAAAGGAACCATCTCC 835043 Query 6522 CAGGGCTGCAAAGCGTGCGGTTACCATGGCAAGCTGGATTTATCA--CACAAACTCAACA 6579 ||||| ||||| || || || | || || | |||| | || ||||| || || | Sbjct 835044 CAGGGATGCAAGGCTTGTGGACATCACGGATTGTTGGA--GAGCAATCACAAGCTGAATA 835101 Query 6580 CCTTCATACTGAAG 6593 ||| || |||||| Sbjct 835102 CCTATATCCTGAAG 835115 >seq434 Length=366605 Score = 131 bits (144), Expect = 1e-25 Identities = 75/77 (97%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 273029 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 273088 Query 20007 GGTAATATTTAGCCTTA 20023 ||| ||||||||||||| Sbjct 273089 GGTCATATTTAGCCTTA 273105 Score = 125 bits (138), Expect = 5e-24 Identities = 74/77 (96%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 111410 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTGACGGTACTTGTTCGCTATCGGTCTCGT 111351 Query 20007 GGTAATATTTAGCCTTA 20023 ||| ||||||||||||| Sbjct 111350 GGTCATATTTAGCCTTA 111334 >seq445 Length=212023 Score = 122 bits (134), Expect = 6e-23 Identities = 73/77 (95%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| Sbjct 140801 CTCTCTCTTCAAAGTTCTTTTCTACTTTCCCTCACGATACTTGTTCGCTATCGGTCTCGT 140742 Query 20007 GGTAATATTTAGCCTTA 20023 ||| ||||||||||||| Sbjct 140741 GGTCATATTTAGCCTTA 140725 >seq676 Length=265522 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||| |||||||| ||||| || || ||||||||||| | | || |||| || Sbjct 178346 ACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGACCGTCTTCC 178405 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 ||||||||||| || || || || | || || || | ||| | || || || ||| Sbjct 178406 AATTGTTTTCCAGCGAAGATCAGTCTCTGCTGGTCTGGGGGAATTCCCTCCTTATCCTGG 178465 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || ||| |||||| |||| || ||||| || || || | || || || || Sbjct 178466 ATCTTTGCCTTCACGTTCTCGATGGTATCAGAGGCCTCGACCTCGAGGGTGATGGTCTTG 178525 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 ||||||| |||||||||||||||||||| ||| Sbjct 178526 CCCGTCAGCGTTTTCACGAATATCTGCATTTTT 178558 >seq2741 Length=15530 Score = 96.9 bits (106), Expect = 2e-15 Identities = 65/73 (89%), Gaps = 5/73 (7%) Strand=Plus/Plus Query 25924 TTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCGCGTCACT 25978 |||||||||| ||||||||||| || |||||||||||||| ||||||||||||||| Sbjct 9463 TTTCGCTAGAAAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 9522 Query 25979 AATTAGATGACGA 25991 ||||||||||||| Sbjct 9523 AATTAGATGACGA 9535 >seq14 Length=2234412 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||| ||||| || ||||| ||||| ||||||||||||| ||| | || || Sbjct 1933606 ACCAAGTGAAGTGTCGATTCCTTCTGAATGTTGTAATCAGACAGGGTGCGTCCATCCTCG 1933547 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | ||||| || || || || || | || || || | ||| | ||| || |||||| | Sbjct 1933546 AGCTGTTTACCAGCGAAAATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGA 1933487 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 ||||| || ||||||| || || || | || || || | || || || || Sbjct 1933486 ATTTTGGCTTTGACATTCTCGATTGTGTCAGAAGCCTCCACCTCGAGGGTGATGGTCTTC 1933427 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || | |||||| ||||| ||||||||||| Sbjct 1933426 CCAGTTAGGGTTTTTACGAAGATCTGCATGTT 1933395 >seq10 Length=2352850 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||||| | ||||| || | ||||| ||| ||| || |||||||| |||||||| Sbjct 818977 CCACCTCGAAGACGCAGGACAAGGTGAAGGGTGGACTCTTTCTGAATATTATAATCAGAA 818918 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | | || || | || || || || || || || ||||| || || | ||| Sbjct 818917 AGGGTTCTGCCATCCTCGAGCTGCTTACCAGCGAAGATCAGACGTTGCTGGTCTGGAGGG 818858 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || ||||||||| || || || ||||| | | || || | ||||| Sbjct 818857 ATTCCCTCTTTGTCCTGGATCTTGGCTTTGACATTTTCAATTGTGTCAGAAGCCTCAACC 818798 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || ||||| || || || ||||||||||||||||| |||||||| Sbjct 818797 TCCAACGTAATGGTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCAT 818751 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/232 (68%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || ||||||| ||||| ||||| || || || || || || || ||||| | Sbjct 820349 CATT-CCTCCTCTCAGACGCAGGACCAAGTGGAGTGTTGATTCTTTCTGGATGTTGTAGT 820291 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | |||| | | | || || | |||||| || || || || | || || || || | Sbjct 820290 CTGACAGAGTTCTGCCATCTTCCAGTTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTG 820231 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||| | ||| || |||||| || || ||| || |||| | || || | Sbjct 820230 GGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATCGTGTCAGATGCCT 820171 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||| | ||| ||||| ||||| ||||| ||||||||||| |||||||| Sbjct 820170 CCACTTCAAGTGTGATAGTCTTACCAGTCAAAGTTTTCACGAAAATCTGCAT 820119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334931001953408