Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq10 131 1e-25 seq676 89.7 4e-13 seq29 89.7 4e-13 >seq10 Length=2352850 Score = 131 bits (144), Expect = 1e-25 Identities = 170/233 (73%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||||||||| ||||| || || |||||||| | ||||| ||| | ||| Sbjct 820803 ATGCAGATCTTTGTAAAGACATTGACTGGGAAGACCATCACACTGGAAGTAGAGGCCTCT 820862 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||||| || |||| |||| || | || |||||||| || ||||| || || Sbjct 820863 GACACTATTGAAAATGTCA---AAGCCAAGATCCAG-GACAAAGAGGGAATTCCCCCAGA 820918 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | || || || || |||||||| || |||| | || | ||||| Sbjct 820919 CCAGCAGCGTTTGATCTTCGCTGGTAAACAATTGGAGGATGGGAGAACACTCTCTGATTA 820978 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||| || ||||| ||||| || ||| | || || | || ||||||||| Sbjct 820979 CAATATCCAGAAAGAGTCCACTCTCCATCTTGTTCTTCGTCTTCGAGGAGGAA 821031 Score = 129 bits (142), Expect = 5e-25 Identities = 170/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||| ||||| || ||| ||||||| | ||||| || | || Sbjct 819890 AATGCAGATTTTTGTTAAGACATTGACTGGCAAAACCATCACCCTGGAAGTCGAAGCATC 819949 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||||||| || | || |||| |||| ||| || |||||||| || ||||| || Sbjct 819950 TGACACTATTGAA--AATGTTAAAGCTAAAATTCAA-GATAAAGAAGGTATCCCACCAGA 820006 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||||| | || || || || |||||||| || || | | ||| | || || Sbjct 820007 TCAACAGCGTTTGATCTTCGCTGGTAAACAATTGGAGGACGGAAGAACTCTTTCAGACTA 820066 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||| ||||||||||| ||||| || ||| | || || | || ||||||||| Sbjct 820067 CAACATTCAAAAAGAGTCCACCCTCCATCTCGTTCTTCGTCTTCGAGGAGGAA 820119 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| ||||| || ||||| | || || || | ||||| | ||||| || | || Sbjct 820346 AATGCAGATATTCGTGAAGACCCTCACGGGAAAGACGATCACCCTAGAAGTCGAAGCCTC 820405 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| ||||| | ||| || ||| || || || || ||||| || ||||| Sbjct 820406 TGACACCATCGAAAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATTCCCCCAGACCA 820465 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || || || ||||| || || |||| | || | |||||||| Sbjct 820466 GCAGCGTTTGATCTTCGCTGGTAAACAGTTGGAGGATGGGAGAACACTCTCTGATTACAA 820525 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||| || ||||| ||||| || ||| | || || | || ||||||||| Sbjct 820526 TATCCAGAAAGAGTCCACTCTCCATCTTGTTCTTCGTCTTCGAGGAGGAA 820575 >seq676 Length=265522 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||| || ||||| | || || || |||| || | || || ||| | || Sbjct 177870 ATGCAAATATTCGTCAAGACCCTCACAGGAAAGACCATAACCCTTGAGGTCGAGGCCTCC 177811 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||| |||||| ||||| || || ||||| || ||||| Sbjct 177810 GACACCATCGAGAATGTGAAGGCTAAAATCCAGGACAAGGAGGGAATTCCCCCAGACCAG 177751 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | | || || || || || || | || |||| |||||| | |||||||| Sbjct 177750 CAGAGACTGATCTTCGCTGGAAAGCAGCTTGAGGATGGACGCACTCTTTCTGATTACAAC 177691 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||| || || || || || || Sbjct 177690 ATCCAGAAGGAATCTACTCTTCACTTGGTCCT 177659 >seq29 Length=2726036 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 |||||||| || || || ||||| ||||| || || ||||||| | || || ||| | Sbjct 1034046 ACAATGCAGATTTTCGTCAAGACATTGACGGGGAAGACCATCACCCTTGAGGTTGAGGCT 1034105 Query 25056 TCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 ||||| || ||||| |||| |||| || | ||| || || || || ||||| || Sbjct 1034106 TCTGATACGATCGAAAATGTCA---AAGCCAAGATTCAG-GATAAGGAGGGCATTCCTCC 1034161 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 ||||| ||| || | || || || || ||||||||||| |||| || ||| | || Sbjct 1034162 AGACCAGCAGAGGTTGATCTTCGCTGGAAAACAATTAGAGGATGGCCGTACTCTCTCTGA 1034221 Query 25172 TTACAATATTCAAAA 25186 ||||| || || || Sbjct 1034222 CTACAACATCCAGAA 1034236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433307044257920