Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_008464.1 Length=60238 Score E Sequences producing significant alignments: (Bits) Value seq3161 255 2e-63 seq3597 214 7e-51 seq2992 165 3e-36 seq2562 165 3e-36 seq3413 154 6e-33 seq3116 150 7e-32 seq2902 145 3e-30 seq2778 143 1e-29 seq3764 98.7 4e-16 seq3702 86.0 2e-12 >seq3161 Length=3056 Score = 255 bits (282), Expect = 2e-63 Identities = 206/241 (85%), Gaps = 11/241 (5%) Strand=Plus/Plus Query 41016 CATGAT-GACCTCCTTTGAAGTTTTAGTTAGCAATCACCAGTTAGTGGCTGGTGATCGGG 41074 |||||| | ||||||||| ||||| |||| |||||||||||||| |||||||| | || Sbjct 2794 CATGATCGGCCTCCTTTGTAGTTT-AGTTT--AATCACCAGTTAGTAGCTGGTGACCAGG 2850 Query 41075 TGTCAACTAGAGCCTTCAAAGATGCTCCGGGCATATTCCCCTTGCGGGTATTGTATTACG 41134 |||||||| ||| || ||||| |||||||||||||||||||||||||||||||||||| Sbjct 2851 TGTCAACT-GAGTCTACAAAGCAACTCCGGGCATATTCCCCTTGCGGGTATTGTATTACG 2909 Query 41135 CCTCTCCACCCGACCTTTGTACGGATGTGACTATGCCAAATTGCAGGCATAAAAAAGCCG 41194 |||||||||||| |||| ||||||||| || ||| |||| ||||||||||||||| Sbjct 2910 CCTCTCCACCCGGCCTT----CGGATGTGATTACGCCGTTTTGCGGGCATAAAAAAGCCG 2965 Query 41195 CAAAGCTATCGGGTGCGGATGACCGCTTTGAAGTTCTAGTGCGGTCAGTAT-GCGATAGC 41253 || |||||||||||||| ||||||||||| ||||| ||||| |||||||| ||||||| Sbjct 2966 CATGGCTATCGGGTGCGGTTGACCGCTTTGTAGTTC-AGTGCTGTCAGTATCCCGATAGC 3024 Query 41254 T 41254 | Sbjct 3025 T 3025 >seq3597 Length=1779 Score = 214 bits (236), Expect = 7e-51 Identities = 175/206 (85%), Gaps = 9/206 (4%) Strand=Plus/Plus Query 41051 ACCAGTTAGTGGCTGGTGATCGGGTGTCAACTAGAGCCTTCAAAGATGCTCCGGGCATAT 41110 |||||||||| |||||| |||||||||||| ||||| |||| ||||||||||||| Sbjct 1550 ACCAGTTAGTTGCTGGTAGCCGGGTGTCAACT-GAGCCACATAAGACGCTCCGGGCATAT 1608 Query 41111 TCCCCTTGCGGGTATTGTATTACGCCTCTCCACCCGACCTTTGTACGGATGTGACTATGC 41170 |||||||||||||||||||||||||||||||||||| |||| ||||||||| || || Sbjct 1609 TCCCCTTGCGGGTATTGTATTACGCCTCTCCACCCGGCCTT----CGGATGTGATTACGC 1664 Query 41171 CAAATTGCAGGCATAAAAAAGCCGCAAAGCTATCGGGTGCGGATGACCGCTT-TGAAGTT 41229 | || | ||||||||||||||||| ||||||||||||||| |||||||| || | || Sbjct 1665 CGTTTTACGGGCATAAAAAAGCCGCATGGCTATCGGGTGCGGAAGACCGCTTATGTA-TT 1723 Query 41230 CTAGTGCGGTCAGTAT-GCGATAGCT 41254 | |||||||||||||| |||||||| Sbjct 1724 C-AGTGCGGTCAGTATCCCGATAGCT 1748 >seq2992 Length=1942 Score = 165 bits (182), Expect = 3e-36 Identities = 228/319 (71%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 6073 CCGTGCCGTTTCACGGCGATTCTCTTTATGTGGTTAACCATAACGGCGAACCATACGTTC 6132 |||| | || |||||||| ||| ||| | || ||||| ||||||||||| || | Sbjct 406 CCGTATCATTCCACGGCGACAATCTCTATCTCGTCAACCACAACGGCGAACCCTATACCC 465 Query 6133 CCATGAAACCTGTCGTTGCGGGGATGGGGCTGGCCTGGCAATCACAGTTGGCTAAGTTAA 6192 | ||||| || | || | | |||||| ||| ||| || | ||| | | Sbjct 466 CGATGAAGCCCATTGTAGAAAGCATGGGGATGGATTGGATGGGGCAATATTTAAAGCTTA 525 Query 6193 GACAGCGTTTTGCGTCAACTATAACGGAAATCGTTATGGTTGCTGAGGATGGGAAACGAC 6252 ||| | ||| ||||||||| ||||||| ||||||||| | || ||||| | | Sbjct 526 AACATAGATTTAGCTCAACTATAGAGGAAATCTCTATGGTTGCCGGAGACGGGAAGCAGC 585 Query 6253 GCAATATGGTGTCCCTGCCGCTTCGAAAACTTGCAGGCTGGTTACAAACCATCAATCCCA 6312 |||| ||||| | ||| || || ||||| || ||||| ||| | || ||||||| || || Sbjct 586 GCAAAATGGTCTGCCTCCCTCTCCGAAAGCTCGCAGGGTGGCTCCAGACCATCAGTCTCA 645 Query 6313 ACAAAGTAAAACCCGAAATCCGCGGCAAGGTAATCCAGTATCAGGAAGAGTGTGACGATG 6372 ||||||| || || |||||||||| |||||| || | |||||| | ||||| ||||||| Sbjct 646 ACAAAGTTAATCCTGAAATCCGCGACAAGGTGATGAAATATCAGAACGAGTGCGACGATG 705 Query 6373 TTCTCTATGAATACTGGAC 6391 | ||||| || || ||||| Sbjct 706 TGCTCTACGAGTATTGGAC 724 >seq2562 Length=1341 Score = 165 bits (182), Expect = 3e-36 Identities = 180/239 (75%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 54117 GGCATGATTCTGGTCGATTACCTGACACTAATGACCGCTGAGAAGGCCGATCGCAACGAC 54176 ||||||||| || ||||||||||| || ||||| | || || |||||| ||| | Sbjct 459 GGCATGATTGGCGTGGATTACCTGACGCTGATGACGACCGATAAAGCCGATACCAATGCG 400 Query 54177 CTTGCTTACGGCATGATCACCAAAGGACTGAAGAACCTTGCCAAAGAGCTTGATTGCGTT 54236 || || | |||| |||||||| | ||||||||||||||||||||||| ||| ||| Sbjct 399 CTGGCGTTTGGCAATATCACCAAGGCGCTGAAGAACCTTGCCAAAGAGCTGGATACCGTC 340 Query 54237 GTTGTGCTTCTGACGCAACTTAACCGCGCACTGGAAAGCCGAACCAATAAACGCCCATTA 54296 || ||||| ||||| || || |||||| |||||| || |||| |||||||| | Sbjct 339 GTGGTGCTACTGACCCAGCTAAACCGCAATCTGGAAGAGCGCGCCAACAAACGCCCCATG 280 Query 54297 CCAAGTGACTCACGAGATACAGGGCAGATTGAACAGGATTGCGATTATTGGGTGGGGAT 54355 || |||||| || || | || |||||||| |||||||| ||||||||| |||| || Sbjct 279 CCCAGTGACAGCCGGGAAAGTGGTCAGATTGAGCAGGATTGTGATTATTGGTTGGGTAT 221 >seq3413 Length=1126 Score = 154 bits (170), Expect = 6e-33 Identities = 356/535 (67%), Gaps = 50/535 (9%) Strand=Plus/Plus Query 45684 TTTCGACAATGCGCTCGGCTTCATCCTTGTCATAGATACCAGCAAATCCGAAGGCGAGAC 45743 |||||| || ||||| ||||| || |||| || || |||||||| || || || | | Sbjct 626 TTTCGATGATCCGCTCTGCTTCGTCGCTGTCGTAAATGCCAGCAAACCCAAATGCCATGC 685 Query 45744 GGGCACACTGAATCATGGCTTTATGCCGTAACATCCGTTTGGGATGCGACTGCCACGGTC 45803 | ||||||||||||| | || || || | ||| || |||| || || |||||||| Sbjct 686 GTGCACACTGAATCAGTGACTTGTGGCGCAGCATACGGGTGGGGTGTGATTGCCACGG-- 743 Query 45804 CGGTGATTTCTCTGCCTTCGCGGGTTTTGAATGGTTCGCGGCGGCATTCATCCATCCATT 45863 || |||| ||| | || | | || |||| ||| Sbjct 744 ---------------CT----GGGTATTGC---GCTCAC------ACTCGCCCATGTATT 775 Query 45864 CGGTAACG-CAGATCGGATGATTACGGTCCTTGCGGTAAATCCGGCATGTACAGGATTCA 45922 |||| || ||| | || || || || || || |||||||||| ||| || | | | Sbjct 776 CGGTGACTACAG-TGGGGTGTTTGCGATCTTTACGGTAAATCCTGCAAGTCGATGCGCCC 834 Query 45923 TTGTCCTGCTCAAAG------TCCATGCCATCAAACTGCTGGTTTTCATTGATGATACGG 45976 | ||||| || || ||||||||||| || ||| | | ||| || ||||| || Sbjct 835 TCGTCCTTATCGTAGCTGAATTCCATGCCATCGAATTGCGGATGTTCGTTAATGATCCGC 894 Query 45977 GACCAGCCATCAACGCCCACCACCGGAACGATGCCGTTCTGCTTATCAGGAAAGGCGTAA 46036 | ||| ||||| || || || |||||||| || ||| || | ||||||||||||||| Sbjct 895 GCCCATCCATCGACACCGACAACCGGAACAATCCCGCCCT---TGTCAGGAAAGGCGTAA 951 Query 46037 ATTTCTTTCGTCCACGGATTAAGACCGTACTGGTTGGCGACGATCAGCAATGCGATGAAC 46096 |||||||| |||||||| || || |||||||||||||| ||||| || | ||| | || Sbjct 952 ATTTCTTTTGTCCACGGGTTGAGTCCGTACTGGTTGGCAACGATAAGTAGGGCGGTAAAT 1011 Query 46097 TGCGCATCGCTGGC---ATCACCTTTAAATGCCGTCTGGCGAAGAGTGGTGATCAGTTCC 46153 ||| | || || | | | || || || ||||| | || ||| | || | ||| Sbjct 1012 TGCTCGTCCGTGACGTTACCCCCCTTGAACGCCGTATTCTTCAGCGTGCTCATTAATTC- 1070 Query 46154 TGTGGGTCGACAGAATCCATGCCGACACGTTCAGCCAGCTTCCCTGCCAGCGTTG 46208 ||| | | | ||||||| | ||||||||||| || || |||| |||| Sbjct 1071 ----GGT-GCCTGGTGCCATGCCAAGGCGTTCAGCCAGTTTTCCAGCCATTGTTG 1120 >seq3116 Length=1110 Score = 150 bits (166), Expect = 7e-32 Identities = 226/321 (70%), Gaps = 9/321 (3%) Strand=Plus/Plus Query 40698 CTTTTCGCACTCGATGAAGTATCGGCGTATCTGGCGGCCTTTTTCGTTACGCTCAACCAT 40757 |||||| ||||| |||||||| ||||| | ||| |||||||| |||||||| || ||||| Sbjct 493 CTTTTCACACTCAATGAAGTAACGGCGAACCTGACGGCCTTTCTCGTTACGTTCGACCAT 552 Query 40758 CGCCAGTTCTTTGGCTGTGTCGAGAGTTAGGTGGTAGTCCTTGCTACGGCGATCACCTCC 40817 || || |||||||| ||||| || || |||||||||||||| || | | | ||| Sbjct 553 GGCAAGCTCTTTGGCCGTGTCCAGGGTGAGGTGGTAGTCCTTTCTGC------CTCGTCC 606 Query 40818 TCGCCCTTTGGTTTGCCCATTTTGGCAAATCAAAATATAGTCCTGGCTTTCAACGAATCC 40877 | ||| ||| || ||| ||| |||| || |||||||| ||| |||||| || Sbjct 607 GTGACCT---ATTTCCCGATTCTGGGAAATAGCTATGTAGTCCTGATTTTTAACGAAACC 663 Query 40878 ATATTCAGCAATGCGTTCTTTAACCCAGTGCGCGAACATTCTGCCCACACCAAGAAAAGA 40937 | | || ||||| ||||| ||| ||| || || | || || |||| || Sbjct 664 AAACTCCGCAATCCGTTCGGTAATCCACGTTGCAAAACGCTTACCTACGGCAAGGAATTC 723 Query 40938 GTGTAGATCACGAGCGTTAACTAGAAGAATTGTTTCGTTGTCGATAGTGCCGTTGAATAC 40997 ||||| || || || | | || || | | |||||| ||||| || ||||| || Sbjct 724 ATGTAGCTCGCGTGCATCACAAAGTAGGGTGGATTCGTTACTTATAGTTCCTTTGAAAAC 783 Query 40998 GGGGATGAGTTGACTGGTCAT 41018 |||||||||||| | ||||| Sbjct 784 GGGGATGAGTTGTGTTGTCAT 804 >seq2902 Length=7946 Score = 145 bits (160), Expect = 3e-30 Identities = 142/183 (78%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 38307 TGGAGAACGCATGATTTTAGGCGTTCTCTGGTAACGAATTTATCTGGGGAAGGAATTATG 38366 |||||| |||| ||||| |||||||| || ||| | |||| | ||||||| || | Sbjct 231 TGGAGAGCGCACGATTTCAGGCGTTCGCTATCAACCAGACTATCAGAGGAAGGAGTTCCG 172 Query 38367 CCCCACGTCACTGAAAAAATGCTGGGGCATGAACTTGGGGGAGTTATGGCCGTGTATAAT 38426 || ||||||||||| || |||||||| ||||| ||||| || || ||||| ||||| || Sbjct 171 CCGCACGTCACTGAGAAGATGCTGGGTCATGAGCTTGGCGGTGTAATGGCGGTGTACAAC 112 Query 38427 AAACACGACTGGTTGTCGGAACAGAAAGATGCGTATGAGTTGTATGCTGATAAAATTTTC 38486 || || || ||| || || || ||||| || || || |||||||||||||||||||| Sbjct 111 AAGCATGATTGGCTGAAAGAGCAAAAAGAAGCATACGAACTGTATGCTGATAAAATTTTC 52 Query 38487 TGG 38489 ||| Sbjct 51 TGG 49 >seq2778 Length=2936 Score = 143 bits (158), Expect = 1e-29 Identities = 197/273 (72%), Gaps = 2/273 (1%) Strand=Plus/Minus Query 5501 AAGGCGCTGGCATGGGTGGAGAAAAACATCAAAGTGCCATTGAGCGAACCCCAGAAAGCG 5560 |||||||| | |||||||| ||| | |||||||| | | || | ||||||| Sbjct 2011 AAGGCGCTCGATTGGGTGGACCGTAACGTTAAAGTGCCGCTCACTGAGACTCAGAAAGTC 1952 Query 5561 GGGATCGCGTCATTCTGTCCGTACAACATTGGTCCCGGTAAGTGTTTCCCGTCGACGTTT 5620 || || || ||||| ||||||| || || ||||||||||| || ||| | || ||||| Sbjct 1951 GGCATTGCCTCATTTTGTCCGTGGAATATCGGTCCCGGTAACTGCTTCACCTCAACGTTC 1892 Query 5621 TATAAACGAATT-AATGCAGGTGATCGCAGGGGAGCGTGTGAGGCGATTCGCTGGTGGAT 5679 || | |||| |||||||| |||| | || || ||| | | |||| | ||||| Sbjct 1891 TACCG-CAAATTGAATGCAGGCGATCTGATTGGTGCCTGTAAAGAGATTAAGCGCTGGAT 1833 Query 5680 TAAGGACGGTGGCAGAGACTGCCGTATTCGTTCAAACAACTGCTACGGTCAGGTATCCCG 5739 |||||| || | ||| |||||||| || |||||||||| ||||| ||| || || Sbjct 1832 CTGGGACGGCGGGAAAGATTGCCGTATCCGCGCAAACAACTGTTACGGGCAGATAGAGCG 1773 Query 5740 TCGTGACCAGGAGAGCGCGCTGTCATGCTGGGG 5772 |||||||||||| || ||| || |||||||| Sbjct 1772 GCGTGACCAGGAGTCCGAGCTTTCTTGCTGGGG 1740 >seq3764 Length=2321 Score = 98.7 bits (108), Expect = 4e-16 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 59897 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAAT 59956 ||||| ||||||||||||| ||||| ||||||||||||||| ||||| ||||||||| Sbjct 2198 GGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGTTGGTTCAAAC 2139 Query 59957 CCAGCAAGGGCCACCATAT 59975 ||| || |||||||||||| Sbjct 2138 CCAACAGGGGCCACCATAT 2120 >seq3702 Length=11964 Score = 86.0 bits (94), Expect = 2e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 54129 GTCGATTACCTGACACTAATGACCGCTGAGAAGGCCGATCGCAACGACCTTGCTTACGGC 54188 || ||||| || || || ||| || ||| ||| || ||| ||| | ||| ||| Sbjct 5906 GTTGATTATCTCACCCTGATGCGCGGTGAAGCGGCAGAGCGCCGCGATATCAGTTATGGC 5965 Query 54189 ATGATCACCAAAGGACTGAAGAACCTTGCCAAAGAGCTTGATTGCGTTGTTGTGCTTCTG 54248 |||||||| || || || || || || ||||| || |||||| | || |||| || Sbjct 5966 GCGATCACCACCGGGCTTAAAAATCTGGCGAAAGAACTGGATTGCATCGTGCTGCTGCTT 6025 Query 54249 ACGCAACTTAACCGCGCACTGGAAAGCCGAACCAATAAACGCCCATTACCAAGTGACTCA 54308 || || || ||||| | | |||| || || | |||||||| |||||| |||| Sbjct 6026 ACCCAGCTAAACCGTGGATTGGAGCAGCGCGCCGACAAACGCCCTTTACCATCTGACAGT 6085 Query 54309 CGAGATACAGGGCAGATTGAACAGGATTGCGA 54340 ||||| ||||| || || ||||||||||| Sbjct 6086 AAGGATACCGGGCAAATCGAGCAGGATTGCGA 6117 Score = 84.2 bits (92), Expect = 8e-12 Identities = 124/174 (71%), Gaps = 4/174 (2%) Strand=Plus/Plus Query 3783 TGGAAAAAATCACAACAGGTGTGTCATACACCACGTCAGCGGTGGGAACGG--GCTACTG 3840 |||| ||||| || || || || || ||| | | || | ||| | ||| | ||||| Sbjct 11793 TGGACAAAATAACCACTGGCGTTTCGTACGGCGCATCGG--GTGTAAGCGGCGGTTACTG 11850 Query 3841 GTTCCTGCAGTTGCTGGACAGGGTTTCCCCGTCTCAGTGGGCGGCAATAGGCGTGCTGGG 3900 | | ||||| || || || | || || ||| | || |||||||| | ||||| || | Sbjct 11851 GATGCTGCAATTACTCGATACCGTATCGCCGACACAATGGGCGGCGCTGGGCGTACTCAG 11910 Query 3901 GAGTCTGCTGTTTGGGCTGCTGACATATCTGACTAACCTGTATTTCAAAATCAG 3954 || || | ||||| ||||| || | |||||| ||||| |||||||||||||| Sbjct 11911 TAGCTTGGTATTTGGCCTGCTTACTTTTCTGACCAACCTCTATTTCAAAATCAG 11964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 192630922803200