Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_008515.1 Length=165890 Score E Sequences producing significant alignments: (Bits) Value seq3532 192 6e-44 seq3176 154 2e-32 seq2351 149 7e-31 seq2656 82.4 8e-11 >seq3532 Length=11862 Score = 192 bits (212), Expect = 6e-44 Identities = 153/184 (83%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 60615 ATTACAAACTCTCGGTGAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAG 60674 |||||| || || ||||| ||||| | || ||||| || |||||||| || |||| | Sbjct 11149 ATTACAGGCTTTCAGTGAAAGTACGCGTAATCACGTCACGTTGCTGTTCTGGGGTCAATG 11208 Query 60675 AGTTAAAGCGAACTGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGAT 60734 |||| || || ||||||||||| || ||||||||||||| |||||| ||||||||||| | Sbjct 11209 AGTTGAAACGCACTGCATAACCAGAAACACGGATGGTCAACTGCGGGTATTTTTCCGGGT 11268 Query 60735 GCTTAACTGCATCTTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCAC 60794 | || || ||||||||||| |||||||| ||||||||||| |||||||||||||| || | Sbjct 11269 GTTTTACCGCATCTTCCAGCGTTTCACGGCGCAGAACGTTCACGTTCAGGTGTTGCCCCC 11328 Query 60795 CTTC 60798 |||| Sbjct 11329 CTTC 11332 >seq3176 Length=18404 Score = 154 bits (170), Expect = 2e-32 Identities = 138/173 (80%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 60629 GTGAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 60688 ||||| ||||| | |||||||| |||||||||| ||||| ||||| ||||| || Sbjct 6328 GTGAAAGTACGGGTAATAACGTCTTGCTGCTGTTCTTTGGTCAGCGAGTTGAAGCGCACG 6387 Query 60689 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 60748 |||||||| || ||||||||||||| |||||||||||||||||| || | | ||||| Sbjct 6388 GCATAACCAGAAACACGGATGGTCAACTGCGGATATTTTTCCGGGTGTTCCATGGCATCC 6447 Query 60749 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAAT 60801 ||| ||||||| || ||||| ||||||||||||||||||||||| || Sbjct 6448 AACAGCATTTCACGGTTCATCACGTTCACGTTCAGGTGTTGACCACCTTCGAT 6500 >seq2351 Length=10305 Score = 149 bits (164), Expect = 7e-31 Identities = 300/445 (67%), Gaps = 0/445 (0%) Strand=Plus/Minus Query 138790 TTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTT 138849 |||| || || || ||||| | ||||| | |||||| |||| ||||| ||| || Sbjct 2986 TTCAACTGCACGCCGTAATCGAGGTGACGCACGCGGTTGCCTTCCACGCCACGGTTGTTC 2927 Query 138850 TTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCG 138909 |||| || || || |||| ||||||| |||||| | || ||| | || || || Sbjct 2926 TTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACAGCGGGTAAAACAACGTTGCCGCT 2867 Query 138910 CCGCCACGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAAA 138969 ||||| || | || ||||||||||| ||||| || || ||||| |||||||| | ||| Sbjct 2866 CCGCCGCGCACACCGCCCTGTGAGCAGGATTTCACTGCGGTCTGGAAATGTTTATAGAAA 2807 Query 138970 GGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTCGGCACGAATC 139029 |||||| ||||||||| | ||||||| || |||| ||| |||||||| Sbjct 2806 GGAATACAGCCAGTATGGAATGCTTCACCACCGCGAATCGGGCTACCCAGCGCACGAATA 2747 Query 139030 ATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAATTGAAGCGGAA 139089 ||| ||||||| || || || || || | || | |||| || || | | ||| Sbjct 2746 CGACCGGCGTTAATGCCGATACCGGCACGCTGTGAAACGTATTTCACGATAGCACTGGAG 2687 Query 139090 GCCTTATTGATAGACTTCAATGAATCTCCTGCCTCAATAACAACACATGAACTAAACTGT 139149 | || || || | || || || |||||| | || || || || ||||| Sbjct 2686 GTGGCGTTAATGGAATCCAGGCTGTCGCCGCACTCAATCAACACGCAGGAGCTGAACTGA 2627 Query 139150 CGAGTTGGAGTACGACAACCAGCCATAATAGGAGTTGGCAATGAAATCTGTCGAGTAGAT 139209 || ||||| ||||| || | ||| || || |||||||||||||||| ||||| Sbjct 2626 CGGGTTGGGGTACGCACGCCGGACATGATCGGCGTTGGCAATGAAATCTTGAAGGTAGAA 2567 Query 139210 ACTGCTTCATAAAAACGAATAACGT 139234 | || ||||| || || | |||| Sbjct 2566 ATCGCGTCATAGAAGCGTTTGACGT 2542 >seq2656 Length=1220 Score = 82.4 bits (90), Expect = 8e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 68342 TGGTGCTGATTGACGGAATCGAACCGCCGACCTTCTCATTACAAGTGAGTTGCTCTACCT 68401 |||||| | || ||||||||||| | |||||| || ||||||||| |||||||||||| Sbjct 182 TGGTGCCGGCTGCCGGAATCGAACTGGCGACCTACTGATTACAAGTCAGTTGCTCTACCA 241 Query 68402 ACTGAGCTAA 68411 |||||||||| Sbjct 242 ACTGAGCTAA 251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530693676288000