Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq10 131 1e-25 seq14 114 1e-20 seq676 105 6e-18 >seq10 Length=2352850 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||||||||| || || || || ||||| |||| || ||||| ||| | | Sbjct 819891 ATGCAGATTTTTGTTAAGACATTGACTGGCAAAACCATCACCCTGGAAGTCGAAGCATCT 819950 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| ||||||||||| || || ||||| ||||| |||||| Sbjct 819951 GACACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCAGATCAA 820010 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || || ||||| || ||||| | || | || || |||||| Sbjct 820011 CAGCGTTTGATCTTCGCTGGTAAACAATTGGAGGACGGAAGAACTCTTTCAGACTACAAC 820070 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||||||||| |||||| | ||| | ||| | || | || ||||| Sbjct 820071 ATTCAAAAAGAGTCCACCCTCCATCTCGTTCTTCGTCTTCGAGGAGG 820117 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || |||| || || || || || | Sbjct 819663 ATGCAGATCTTCGTGAAGACGTTGACTGGAAAGACCATCACCCTGGAGGTCGAGGCCTCT 819722 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || ||||| || || || ||||| ||||| || || || || || Sbjct 819723 GACACAATTGAAAATGTCAAAGCCAAGATCCAGGACAAAGAGGGAATCCCTCCAGACCAG 819782 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || || || || ||||| || ||| ||| ||| |||| || |||||| Sbjct 819783 CAACGTCTGATCTTCGCTGGTAAGCAGTTGGAAGATGGCCGAACCCTCTCAGACTACAAC 819842 Query 22399 ATTCAAAAAGAATCCAC 22415 |||||||| |||||||| Sbjct 819843 ATTCAAAAGGAATCCAC 819859 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || |||||||| || ||||| || |||| ||||||||||| | | Sbjct 820119 ATGCAGATTTTCGTGAAAACTTTGACTGGTAAGACTATCACACTTGAAGTGGAGGCATCT 820178 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| || || || ||||||||||| ||||| || || || Sbjct 820179 GACACGATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 820238 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || || ||||| | || ||| | | || | || || |||||| Sbjct 820239 CAGCGTTTGATCTTCGCTGGTAAACAACTGGAAGATGGCAGAACTCTGTCAGACTACAAC 820298 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || |||||||| || | || || || |||| || | ||||| Sbjct 820299 ATCCAGAAAGAATCAACACTCCACTTGGTCCTGCGTCTGAGAGGAGG 820345 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || ||||| |||| || || || |||| || ||||| || || | Sbjct 821031 ATGCAGATTTTCGTCAAAACCCTAACTGGCAAGACCATCACACTCGAAGTAGAGGCCTCT 821090 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| ||||| || ||||||||||| ||||| || |||||| Sbjct 821091 GACACAATTGAAAACGTCAAGGCCAAAATCCAGGACAAGGAGGGCATTCCTCCAGATCAA 821150 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| || ||||| | || ||| | || | ||||| |||||| Sbjct 821151 CAGCGTTTGATCTTTGCTGGTAAACAACTGGAAGATGGTAGAACTTTGTCCGACTACAAC 821210 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 || || |||||||| || | || || ||| Sbjct 821211 ATCCAGAAAGAATCTACACTCCACTTGGTT 821240 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || ||| | || || || || |||| || ||||| || || | Sbjct 820575 ATGCAGATTTTTGTCAAGACTCTGACTGGCAAGACCATCACACTCGAAGTAGAGGCCTCT 820634 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| || || || || || ||||| ||||| || || ||| Sbjct 820635 GACACAATTGAAAACGTCAAGGCGAAGATCCAGGATAAAGAGGGAATTCCTCCAGACCAA 820694 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || || || ||||| || || ||| | | || |||| || |||||| Sbjct 820695 CAACGTCTCATCTTCGCTGGTAAACAATTGGAAGATGGCAGGACTCTCTCAGACTACAAC 820754 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || |||||||| Sbjct 820755 ATCCAGAAGGAATCCAC 820771 >seq14 Length=2234412 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || || || ||||| |||| || || || |||| || || ||||| | Sbjct 1933395 AACATGCAGATCTTCGTAAAAACCCTAACTGGGAAGACCATCACCCTCGAGGTGGAGGCT 1933454 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | || || ||||| |||||||| ||||||||||| ||||| || || Sbjct 1933455 TCTGACACAATCGAGAATGTCAAAGCCAAAATTCAGGACAAGGAGGGCATTCCCCCAGAC 1933514 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || || || || || |||||| | |||||| |||||| | || |||||| Sbjct 1933515 CAGCAGAGGCTGATTTTCGCTGGTAAACAGCTCGAGGATGGACGCACCCTGTCTGATTAC 1933574 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| || ||||| || | || || || | |||| || || ||| Sbjct 1933575 AACATTCAGAAGGAATCGACACTTCACTTGGTACTCAGATTACGTGGTGGT 1933625 Score = 87.8 bits (96), Expect = 2e-12 Identities = 257/388 (66%), Gaps = 26/388 (7%) Strand=Plus/Minus Query 129697 ATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCG 129756 ||||| |||||||||||||| ||| ||| | | |||||| || || |||| | Sbjct 232075 ATCGATGCCAAATTGCAGACAGCAACTTCATCGGGGCTCGAGTACTCAACGATCTCGGTG 232016 Query 129757 CACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCA 129816 ||||| || || ||| || || || | | ||| ||||| |||| ||||||| ||| Sbjct 232015 CACAAGTTGCTGCATTTTATTGTTCCAAGGTTCTTCTGATTGGATTTCCTGTTGCAGGCA 231956 Query 129817 TCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCG--TTTCGACAATG--GTCCT 129872 || ||||||| |||||| || || || || || ||||| | || || | || |||| Sbjct 231955 TCCTTGTACAGCATGTAGGGAGTTCCAGTCTCAACTTGTGACATTAGA-ATTGCTGTCC- 231898 Query 129873 GAACAAGTCTCGAGC-----CTTGATCTGTCTTACAAATTTGCCACATTTCTCGTATGCC 129927 ||| || || || ||||| | | || | ||| | | |||||| Sbjct 231897 --ACAGCTCACGGGCTGGCACTTGACGCTTGTAACGA----GCCTC-CTCCTCGTACTTT 231845 Query 129928 ACATACAGTTGTTCAAATT-CTGAGCCGTGTACGGTGTC---GAGCAACGGCGATTCACG 129983 ||||| | || |||| || | || ||||| ||| || | || | Sbjct 231844 GTGTACAGCTTATCGAATTCCTCACCC----CAAGTGTCACAGAGGCCTGGACACTCGTG 231789 Query 129984 CGGACACATCAAACTCCACATTCCATCCGCTTCGACTCGTTTCATAAACAAATCGGGTAC 130043 || |||||||||||||| || || || | ||| |||||||| ||||||||||||| Sbjct 231788 GGGGCACATCAAACTCCAGGGACCGTCTGCCTTGACACGTTTCATGAACAAATCGGGTAT 231729 Query 130044 CCACAGGGCGTACAACAAATCTCGCGCT 130071 |||||||||||| |||| || || ||| Sbjct 231728 CCACAGGGCGTAGAACAGCTCACGTGCT 231701 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 129697 ATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCG 129756 ||||| |||||||||||||| ||| ||| | | |||||| || || |||| | Sbjct 775628 ATCGATGCCAAATTGCAGACAGCAACTTCATCGGGGCTCGAGTACTCAACGATCTCGGTG 775569 Query 129757 CACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCA 129816 ||||| || || ||| || || || | | ||| ||||| |||| ||||||| ||| Sbjct 775568 CACAAGTTGCTGCATTTTATTGTTCCAAGGTTCTTCTGATTGGATTTCCTGTTGCAGGCA 775509 Query 129817 TCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTG 129854 || ||||||| |||||| || || || || || ||||| Sbjct 775508 TCCTTGTACAGCATGTAGGGAGTTCCAGTCTCAACTTG 775471 >seq676 Length=265522 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || || |||| || || || || || || Sbjct 177642 ATGCAAATCTTCGTCAAGACCCTCACAGGAAAGACCATCACCCTCGAGGTCGAGGCCTCC 177583 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || ||||| || || |||||||| ||||| ||||| || Sbjct 177582 GACACCATCGAGAATGTGAAGGCTAAAATCCAGGATAAGGAGGGAATTCCCCCCGACCAG 177523 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || || || || ||| | |||||| ||||| | || ||||||||| Sbjct 177522 CAGAGACTGATCTTCGCTGGAAAGCAGCTTGAGGATGGACGCACTCTTTCTGATTACAAC 177463 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || ||||| ||| | || || || | ||| | || |||||| Sbjct 177462 ATTCAGAAGGAATCTACCCTTCACTTGGTCCTTCGACTTCGTGGAGGT 177415 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || || | || ||||| || || || || Sbjct 177870 ATGCAAATATTCGTCAAGACCCTCACAGGAAAGACCATAACCCTTGAGGTCGAGGCCTCC 177811 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || ||||| || ||||||||||| ||||| || || || Sbjct 177810 GACACCATCGAGAATGTGAAGGCTAAAATCCAGGACAAGGAGGGAATTCCCCCAGACCAG 177751 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || || || || ||| | |||||| ||||| | || ||||||||| Sbjct 177750 CAGAGACTGATCTTCGCTGGAAAGCAGCTTGAGGATGGACGCACTCTTTCTGATTACAAC 177691 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || ||||| || | || || || | ||| | || |||||| Sbjct 177690 ATCCAGAAGGAATCTACTCTTCACTTGGTCCTTCGACTTCGTGGAGGT 177643 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || || |||| || || || || || || Sbjct 178098 ATGCAAATCTTCGTCAAGACCCTCACAGGAAAGACCATCACCCTCGAGGTCGAGGCCTCC 178039 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || || || |||||||| ||||| || || || Sbjct 178038 GACACCATCGAGAATGTGAAGGCTAAGATCCAGGATAAGGAGGGAATTCCCCCAGACCAG 177979 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || || || || ||| | |||||| ||||| | || ||||||||| Sbjct 177978 CAGAGATTGATCTTCGCTGGAAAGCAGCTTGAGGATGGACGCACTCTTTCTGATTACAAC 177919 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || ||||| ||| | || || || | ||| | || |||||| Sbjct 177918 ATTCAGAAGGAATCTACCCTTCACTTGGTCCTTCGACTTCGTGGAGGT 177871 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || | || ||||| || || || || Sbjct 178326 ATGCAGATCTTCGTCAAGACCCTCACAGGAAAGACCATAACCCTTGAGGTCGAGGCCTCC 178267 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || ||||| || ||||||||||| ||||| || || || Sbjct 178266 GACACCATTGAGAATGTGAAGGCTAAAATCCAGGACAAGGAGGGAATTCCCCCAGACCAG 178207 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || || || || ||| | |||||| ||||| | || ||||||||| Sbjct 178206 CAGAGACTGATCTTCGCTGGAAAGCAGCTTGAGGATGGACGCACTCTTTCTGATTACAAC 178147 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || ||||| || | || || || | ||| | || |||||| Sbjct 178146 ATCCAGAAGGAATCTACTCTTCACTTGGTCCTTCGACTTCGTGGAGGT 178099 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| || || || ||||| | || || || || |||| || || || || | Sbjct 178558 AAAAATGCAGATATTCGTGAAAACGCTGACGGGCAAGACCATCACCCTCGAGGTCGAGGC 178499 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | | |||||| | || | | || ||| || || || |||||||| ||||| || || Sbjct 178498 CTCTGATACCATCGAGAACGTGAAGGCAAAGATCCAGGATAAGGAGGGAATTCCCCCAGA 178439 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 || || | || || || || || ||||| || || || ||||| | || ||||| Sbjct 178438 CCAGCAGAGACTGATCTTCGCTGGAAAACAATTGGAAGACGGTCGCACTCTTTCTGATTA 178379 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||| || || ||||| || | || || || | ||| | || |||||| Sbjct 178378 CAACATCCAGAAGGAATCTACTCTTCACTTGGTCCTTCGACTTCGTGGAGGT 178327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419707701953920