Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq38 96.9 7e-15 seq232 91.5 3e-13 seq40 91.5 3e-13 seq156 89.7 1e-12 seq23 84.2 4e-11 >seq38 Length=2624962 Score = 96.9 bits (106), Expect = 7e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| || |||||||||||||||||| | ||||||||||||| | ||||||||||||||| Sbjct 2553494 AGCCTGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 2553553 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 2553554 CCCCACGTTGGGC 2553566 >seq232 Length=1000471 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || ||| || |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 695490 ATTGCCTGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 695549 Query 142561 AGCCCCACATCGGGC 142575 |||||||| |||||| Sbjct 695550 AGCCCCACGTCGGGC 695564 >seq40 Length=1609930 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| || |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 1250012 AGCCTGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1250071 Query 142563 CCCCACATCGGGC 142575 |||||| |||||| Sbjct 1250072 CCCCACGTCGGGC 1250084 >seq156 Length=1465548 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142052 TGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||| |||||||||| ||| ||||||||||||||||||||||||||| | |||||||| Sbjct 574160 TGTCCCTGTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGTGGGTTCGAT 574219 Query 142112 CCCCGCCAGAGA 142123 |||| |||| || Sbjct 574220 CCCCACCAGGGA 574231 >seq23 Length=2299455 Score = 84.2 bits (92), Expect = 4e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGT-CGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559 |||||| || ||||||||| ||| ||||| ||||||||||||| |||||||||||| Sbjct 1138343 ATAGCCTGGCTAGCTCAGTACGGCAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTC 1138402 Query 142560 GAGCCCCACATCGGGC 142575 ||||||||| |||||| Sbjct 1138403 GAGCCCCACGTCGGGC 1138418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027784544777088