Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_008717.1 Length=36415 Score E Sequences producing significant alignments: (Bits) Value seq3688 612 4e-171 seq3855 136 9e-28 seq1892 122 2e-23 >seq3688 Length=22785 Score = 612 bits (678), Expect = 4e-171 Identities = 926/1307 (71%), Gaps = 25/1307 (2%) Strand=Plus/Plus Query 13538 CCGGACGGCCAGCACGAAGCCATTGCGGCGCCGCGTGGTAATGCCAAGTCCACCCTGGTG 13597 ||| | ||| |||| || ||||| || ||||||||||| | |||||||| || ||||| Sbjct 6451 CCGAAAGGCGAGCAGGACGCCATCGCCGCGCCGCGTGGGGAGGCCAAGTCAACGCTGGTC 6510 Query 13598 AGCCAGATATTCGTGATCTGGTGCGTACTCACCGGCCGCAAGCATTACCCCCTGATCATC 13657 |||||| | || ||| | ||||| | | |||| |||||| || ||||| | | Sbjct 6511 AGCCAGCTGTTTGTGCTGTGGTGTCTGGTGCGCGGCATCAAGCACTATGCCCTGGTGGTG 6570 Query 13658 ATGGATGCCTTCGAACAGGCCGCCACGATGCTGGAGGCGATCAAGGCGGAGCTGGAGTTC 13717 |||||| || |||| |||||| | ||||||| || || |||||||| |||||||| ||| Sbjct 6571 ATGGATTCCATCGACCAGGCCTACCCGATGCTCGAAGCCATCAAGGCCGAGCTGGAATTC 6630 Query 13718 AACCCGCGCCTGGCCATGGACTTCCCCCAGGGCGCCGGCAAGGGCCGCGTTTGGCAGGTC 13777 ||||| || ||| ||||||||| | | | ||||| ||| ||||| |||||| | Sbjct 6631 AACCCCCGGCTGCTGGCTGACTTCCCCGAAGCCTGCGGCATGGGGCGCGTCTGGCAGATG 6690 Query 13778 GGCACCATCGTTACGGCGAACGATGCCAAGGTCCAGGTCTTCGGCTCCGGCAAGCGGATG 13837 ||||||||| | ||| |||||| |||||| ||||| |||| ||| || | || Sbjct 6691 GGCACCATCCTGACGCGCAACGATATCAAGGTGCAGGTGGCCGGCAGCGGTAAAAAGCTG 6750 Query 13838 CGCGGCCTTCGACACGGCCCGCACCGTCCTGACCTGGTGATCGGCGACGACCTGGAGAAC 13897 |||||||| || ||||| ||| |||| |||||||||||||| ||||| | |||||| Sbjct 6751 CGCGGCCTGCGCCACGGGCCGTACCGCCCTGACCTGGTGATACTGGACGATATTGAGAAC 6810 Query 13898 GACGAGAACGTCCGCAGCCCGGAGCAGCGCGACAAGCTGGAAAACTGGCTGAAGAAAACC 13957 |||||| | || |||| |||||| |||||||||||||||||||||||||||| |||||| Sbjct 6811 GACGAGCAGGTACGCAACCCGGACCAGCGCGACAAGCTGGAAAACTGGCTGAGAAAAACC 6870 Query 13958 GTTCTGTCCCTCGGCTCGGCCGACGACACCATGGACGTGATCATCATCGGGACCATCCTT 14017 || ||| | || || || | || | | || ||| || ||||| |||||||| Sbjct 6871 GTGCTGCCGCTGGGTGGTGCGGGCGCAAAACTCGATGTGGTCTATATCGGCACCATCCTG 6930 Query 14018 CACTACGACTCGGTCCTGTCGCGCCTGCTGAAAAACCCGCTGTGGAAGC-GGCGCAAGTT 14076 || ||||||||||| | || ||| ||||| |||||||| ||| || ||||| || Sbjct 6931 CATTACGACTCGGTGTTATCACGCACCCTGAATAACCCGCTATGGCGGCAGGCGC-GCTT 6989 Query 14077 CAAGGCGATCATCGAATGGCCGCACCGCATGGACCTGTGGGAGAAGTGGGAGGAACTTCT 14136 ||||| | | | |||||| | || ||||||||| |||||| | | | Sbjct 6990 TAAGGCCCTGCGCCAGTGGCCGGTGAACCTGTCGTTGTGGGAGAGCTGGGAGCAGCGCTT 7049 Query 14137 GCTCAACTCCGACGACGAGGGCGCCGCCGCTCTGGCCTTCTACCAGGAACGCGCCGCCGC 14196 || || | | | ||| | || || | || || || | || | ||| Sbjct 7050 GCGTAA---CCAGGGAGAG---GATGCGGCGCAGGATTTTTATACGTCACACCGTACCGA 7103 Query 14197 CATGGAGGACGGCGCGATCATCTGCTGGCCGGATGGGCAGCCCCTCTACAAGCTTATGGT 14256 |||||||| |||||| ||| |||| | | ||| || || | || ||| Sbjct 7104 GATGGAGGAAGGCGCGGAAGTCTCCTGGTCCGCACGGCCGCTGCT---GACCCTGATGCA 7160 Query 14257 GAAACGTGCCCGCGATGGGCACTCGGCGTTCGACTCGGAACAGCAGAACGACCCAGTCCA 14316 | || ||||| || || ||| | | || || | || | ||||| | ||| ||| Sbjct 7161 TATCCGCGCCCGTGACGGTCACGCCACCTTTGATGCCGAGTACCAGAATGCCCCGGTCAG 7220 Query 14317 GGGCGAGAACGCCCCCTTCGCC----GCCTGCATCACGTTCTGGGTCAACCGCCTGGCGC 14372 || || | || | || ||| |||||||| |||||||||||||| || Sbjct 7221 CGGTGAAGATGCGCTGTTTGCCCACTGCCTGCAT----TTCTGGGTCAACCGGCTTAACG 7276 Query 14373 AGTGGATGTTCTACGGCGCGTGCGACCCGTCCCTGGGTAAGCAAGGTTCCAGCCGCGACC 14432 ||||| | |||||||| || |||||||| ||| || ||| || ||||||| |||| Sbjct 7277 AGTGGCTTTTCTACGGGGCCTGCGACCCCAGCCTCGGCAAGGCCGGGGCCAGCCGTGACC 7336 Query 14433 C--CAGCGCCATCCTGGTGGGTGGGTTCAACCGGGAGACAGGCGTCCTGGACGTGGTCGA 14490 | |||||| | ||||| ||||| || || || | || ||||| ||||| ||||| || Sbjct 7337 CGTCAGCGC--TGCTGGTCGGTGGCTTTAATCGCGCCACCGGCGTGCTGGATGTGGTGGA 7394 Query 14491 GGCCGCCATCCGCAAACGCCTGCCGGACAAGATCATCGAGGACATCATCGCCATGCAGCG 14550 || || ||||| || ||||||||| || ||| | || || || |||| Sbjct 7395 AGCGCAGATACGCAAGCGGCTGCCGGACGCCATTATCAGCAATATTATTGCTCTGCAAAA 7454 Query 14551 GGCCTATCACTGCCTGGTGTGGGGCGTTGAGGCGGTCCAGTTCCAGGAGTTCCTGCGCAC 14610 || || ||||| |||||||||||| |||||||||| ||||| ||||||||||||||||| Sbjct 7455 GGAATACCACTGTCTGGTGTGGGGCATTGAGGCGGTGCAGTTTCAGGAGTTCCTGCGCAC 7514 Query 14611 CGAGCTGGTGAAGCGCTCCGCCAAGGCTGGCT-GCCCAGTACCTGCCCGAGCGATCACGC 14669 ||||||| | |||||| || || ||||| | ||| || || || || || || | | Sbjct 7515 CGAGCTGATTAAGCGC-GCGGCACAGCTGGGTCACCCGGTGCCGGCGCGGGCTATTATCC 7573 Query 14670 CACACGCCGACAAGCTACTGCGCATCGAAAGCCTCCAGCCGCACATGGCCAACGGCCTGA 14729 | || ||||||||||| |||| ||||| | ||| ||||| || |||| ||||| || | Sbjct 7574 CCCATGCCGACAAGCTGTTGCGTATCGAGACCCTGCAGCCCCATATGGAAAACGGGCTTA 7633 Query 14730 TCCGTCTGCATCCAAGCCAGACCGTCCTGGAACAACAGCTGCGCCACTTCCCGGCCGCAG 14789 |||||||||| | ||||||||| ||| ||| |||||||||||||| || ||| | Sbjct 7634 TCCGTCTGCACGCCAGCCAGACCACACTGATACAGCAGCTGCGCCACTTTCCCCGCGCCG 7693 Query 14790 ACCACGACGATGGCCCCGACGCCCTACACATGCTCTGGATGCTGGCC 14836 |||| ||||| ||||| ||||| || || |||||||||| ||||||| Sbjct 7694 ACCATGACGACGGCCCGGACGCGCTGCATATGCTCTGGACGCTGGCC 7740 Score = 132 bits (146), Expect = 1e-26 Identities = 596/921 (65%), Gaps = 45/921 (5%) Strand=Plus/Plus Query 15097 CATCCTGGTCGAGGCCGAACAGGGCAACCTCCAAGCCCAAGCCGAACTGTTCATGGACAT 15156 ||||||| ||||||||| ||||| |||| || || || ||||| | || || Sbjct 7970 CATCCTGAGCGAGGCCGAGCAGGGGCACCTGGTGCGTCAGGCTGACCTGTTTTTTGATAT 8029 Query 15157 GGAGGAACGCGACGCCCACCTGTTCGCCGAAATGAGCAAGCGAAAGCGCGCAATCCTTG- 15215 |||||| ||||||| |||||| || ||||| ||||||||||| ||| | || || Sbjct 8030 GGAGGAGCGCGACGGCCACCTTTTTGCCGAGATGAGCAAGCGC---CGC-CGTTCGGTGA 8085 Query 15216 -GCCTGG-ATTGGGCGG-TCGAGCCCCCGCGTAACGCCTCGGCGGCCGAGAAAGCCGATG 15272 ||| | |||| | | ||| |||||| | || ||| || |||| ||||| Sbjct 8086 TGCCGCTCACCTGGCGCATTGTGCCGCCGCGTCATCCCAATGCGCAGGA-AAAGGCGATG 8144 Query 15273 CCG-ACTACCTGCACGAGCTGTTGCTCGACCTGGAAGGGCTGGAGGACTTGCTGCTCGAT 15331 || || | | ||| ||| |||||| | | | || ||||| |||| Sbjct 8145 GCGGACGCCGCGACCGAATGGTTTTCAGACCTGCCGGAGTTTGAAACGCTGCTGTTCGAC 8204 Query 15332 GCGCTGGACGGCATCGGCCACGGCTACAGCTGCATCGAGCTGGAGTGGGCGTTACAAGGG 15391 |||||||| ||| |||||||||| | | | || ||| |||| ||| || Sbjct 8205 TTGCTGGACGCCATTGGCCACGGCTTTGCCGCCGTGGAAATGGTGTGGAA---ACA--GG 8259 Query 15392 CGCGAG-----TGGATGCCGCTG-GCGTTCCACCACCGACCGCAGAGCTGGTTCCAG--C 15443 || | ||| |||| ||| || ||| || | || ||||| ||||||||||| | Sbjct 8260 CGGAAAACATCTGGCTGCC-CTGTGCCTTCTACAAGCGCCCGCAACGCTGGTTCCAGACC 8318 Query 15444 TCAACCCCGAAGACCAGAACGAGCTGCGGCTGCGCGACAACAGCCCGGCCGGCGAAGCCT 15503 |||||| | |||| |||| | || ||| ||| ||||| | ||| | | Sbjct 8319 GCAACCC--ATGACCGTAACGCTATCCGCCTGATTGACGGCAGCCTTGACGGTGCTGAGC 8376 Query 15504 TGCAGCCCTTCGGCTGGATCATTCACCGGCCGCGTGCGCGCTCCGGCTATGTGGCCCGCA 15563 | | ||||| |||||| | | || || | | || ||||| || ||| | Sbjct 8377 TTAATCCCTTTGGCTGGCTGCTGCATCGCCATCAGGCCAAAAGCGGCTGGGTAGCCGAAA 8436 Query 15564 GCGGCCTGTTCCGCGTGCTGGCCTGGCCGTACCTGTTCCGCCACTACGCCACCTCCGACC 15623 |||| |||||||| || |||| ||| | ||||||||| | || || |||| Sbjct 8437 GCGGTCTGTTCCGGGTACTGGTGTGGACCTACCTGTTCAAGAATATTGCTGCCCGTGACC 8496 Query 15624 TGGCGGAAATGCTGGAAATCTATGGCCTGCCGATCCGGCTGGGGAAATA-TCCGCCAGGT 15682 |||||||| | ||||||||||| |||||||||| ||| |||| | || |||| | || Sbjct 8497 TGGCGGAATTTCTGGAAATCTACGGCCTGCCGACGCGGGTGGGCACCTATTCCGACGGGG 8556 Query 15683 ACTGCCGACGAGGAGAAGGCAACCT--TGCTGCGGGCCGTTACCGGCCTGGGACATGCTG 15740 | | || || || ||| ||| | ||||| |||| | || |||||| ||| | Sbjct 8557 CCAG-TGAAGAAGAAAAG--AACATGCTGCTGTGGGCGCTGCGCGACCTGGGGCATAACG 8613 Query 15741 CCGCAGGGATCATCCCCGAAACCATGGCCATCGACTTCCAGCAGGCCGCGCAGGGTAGCA 15800 ||| || || |||| |||| || || ||| ||| || ||||| ||||| ||| Sbjct 8614 CCGGCGGCATTATCCACGAACGCACCGCGATCCGCTTTGAGTCCGCCGCCCAGGG--GCA 8671 Query 15801 G--CGAGCCGTTCCTGGCGATGATGCGGCAAAGCGAAGACGCCATATCCAAGGCGGTCCT 15858 | ||| ||||||| | ||||||| | ||||| | || ||||||| | || Sbjct 8672 GGTCGACCCGTTCCAGTATATGATGCAGTGGTGCGAAAGCACCCAGTCCAAGGTCATTCT 8731 Query 15859 GGGCGGCACCCTGACCAGCACCACCAGCCAGTCAGGC---GGCGGCGCTTTTGCTTTGGG 15915 ||||||||||||||||| |||| | | | ||| || || | || | || Sbjct 8732 GGGCGGCACCCTGACCA-----CCCAGGCGGAC-GGCAAGAGCAGCACCAACGCCCTAGG 8785 Query 15916 CCAGGTGCATAACGAGGTTCGGCACGACTTGCTGGCATCCGATGCCCGCCAGTTGGCGGC 15975 | | ||||||||||| || || ||||| || || |||||| ||| |||| | Sbjct 8786 CAACGTGCATAACGAAGTGCGCCACGAGCTGACCGCCAGCGATGCGGTGCAGCTGGCCGG 8845 Query 15976 AACGTTGTCCCGCGATCTGCT 15996 ||| || |||| || ||||| Sbjct 8846 CACGCTGACCCGTGACCTGCT 8866 Score = 104 bits (114), Expect = 5e-18 Identities = 161/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 16875 CCGCCTGGATACCATCTACCAGACCAACATGCAGGCGGCCTACATGGCAGGGCGCTAC-- 16932 ||| ||||| ||||| | | ||||| | || | ||||| ||||| |||||||| Sbjct 9714 CCGGCTGGAGACCATTTTTCGCACCAATACCCAATCTGCCTATATGGCCGGGCGCTATCA 9773 Query 16933 GCGGCCGCCTACGAAGCCAGGGAAACCCACCCTTACTGGATGTATGTGGCGGTGATGGAT 16992 ||||| || ||| | || | || |||||| |||||||||||||||||| Sbjct 9774 GCGGCTGCGCGAGAA--CGTCGACCAGCGGCCCTACTGGCAGTATGTGGCGGTGATGGAC 9831 Query 16993 GGCGTTACCCGGCCCAGCCATGCCGCCCTGCATGGGAAAGTGTTCAGGTGGGACGATCCG 17052 || ||||| |||||||||||||| |||||||| |||||| | | |||||| || Sbjct 9832 AGCCACACCCGCCCCAGCCATGCCGCGCTGCATGGCCGGGTGTTCCGTTATGACGATGCG 9891 Query 17053 ATCTGGCAGCACATCACCCCGCCCAATGGCTACAACTGCCGGTGCCGG 17100 |||| | | | ||||| || |||||||||||||| |||||| Sbjct 9892 GGCTGGGATACCCTGTTTCCGCCGAACGGCTACAACTGCCGCTGCCGG 9939 >seq3855 Length=27953 Score = 136 bits (150), Expect = 9e-28 Identities = 231/331 (70%), Gaps = 8/331 (2%) Strand=Plus/Minus Query 20269 CAACACCTATGGCTGGCTGGGGCAGTTCCCCAAGCTGCGCGAGTGGATCGGTCAGCGTGT 20328 ||| ||||| ||||||||||||||||| ||| | | || |||||| |||| ||| Sbjct 12039 CAATACCTACGGCTGGCTGGGGCAGTTTCCCGCGTTCCGGGAGTGGGTCGGCTCGCGCAG 11980 Query 20329 CATCAAGGACATGGCGGCCCAGGGCTACCAGATCACCAACAAGCTCTTCGAATCGACCGT 20388 ||| || | ||| || | | |||||| |||| ||||||| || ||| || || Sbjct 11979 TATCCAGCAGATGAAGGTCTATGGCTACGCCATCAACAACAAGACCTATGAAGGCACGGT 11920 Query 20389 GGGCGTAAAACGTACCGACATCGAGGACGACAACCTCGGCGTCTACGGACCGCTCATGCA 20448 | | | | || || | ||||| ||||| ||||||| || | ||||| | || Sbjct 11919 CGCCATTACCCGCGATGATTTTGAGGATGACAATCTCGGCGCGTATAGCCCGCTGTTTCA 11860 Query 20449 GGAAATGGGGCGCGCTGCCGGCGCGCATCCCGACGAGCTGGTCTT---CGCCCTGCTCAA 20505 ||||||||| ||||| |||| ||| || || || |||||||| || |||| ||| | Sbjct 11859 GGAAATGGGCCGCGCCGCCGCCGCACAACCGGATGAGCTGGTGTTTACCGCCTTGCGC-- 11802 Query 20506 GGCCGGCAACGCCAATCTCTGCTACGACGGTCAAAAC-TTCTTCGACACCGATCACCCGG 20564 | |||||| | |||||||||||| |||| | || || || | ||| || |||| Sbjct 11801 -GACGGCAATAAAACCGACTGCTACGACGG-CAAACCTTTTTTTGATAGCGAACATCCGG 11744 Query 20565 TCTATCCGAACGTGGATGGCACCGGCACGGC 20595 | ||||| || || || |||| |||||| || Sbjct 11743 TGTATCCCAAGGTCGACGGCAGCGGCACCGC 11713 >seq1892 Length=4253 Score = 122 bits (134), Expect = 2e-23 Identities = 180/255 (71%), Gaps = 0/255 (0%) Strand=Plus/Minus Query 12260 GTCATGGCGCACCCGAAGGAAACCCGCGACGCCCTGCGCCGCGCCTACGTCCTCGACCGC 12319 || |||||||||||| |||||| ||||||| | ||||| || ||||| | ||| | Sbjct 394 GTAATGGCGCACCCGCAGGAAATCCGCGACACGCTGCGACGGGCCTATATTTTCGGGCAG 335 Query 12320 CAGTCCCTGGAGGTCGCGGCCGCCATGTTCGGCGTCTCCTACGGCACCGCCCGCCGCTGG 12379 |||||| ||| | || ||||| | ||||| | | ||| || || || |||||| Sbjct 334 ATGTCCCTTGAGATTGCCGCCGCGCAATCGGGCGTTGCGTTCGGAACGGCACGGCGCTGG 275 Query 12380 AAACAGCAGGCGGAAGCCGAGGGGGACGACTGGGACAAGGCGCAATCGGCGCAGTTGCTG 12439 ||| | | || | | || ||| || |||||||||||| || | ||||| || || Sbjct 274 AAAAAAGACGCTCAGGACGCGGGTGATGACTGGGACAAGCAGCGGGCTGCGCATATGATG 215 Query 12440 GCCGGTGGTGGGCTGGAGGACGTGGCGCGCCAGGTGCTGGCCGGCCTGGTGACCCAGTTC 12499 || || ||||| |||||||| | | ||| ||| | |||| ||||| || |||| | Sbjct 214 GCGGGCGGTGGTCTGGAGGATATTGGCCGCGCGGTATTAACCGGGCTGGTAACGCAGTAC 155 Query 12500 CAGGCCACGATGGAA 12514 ||| ||||| ||||| Sbjct 154 CAGACCACGCTGGAA 140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116400914930432