Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq10 102 6e-17 seq676 95.1 9e-15 >seq10 Length=2352850 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| |||| ||||| || ||||||||||| ||| ||||| ||||| | Sbjct 819890 AATGCAGATTTTTGTTAAGACATTGACTGGCAAAACCATCACCCTGGAAGTCGAAGCATC 819949 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || |||| |||||| |||||||| ||| | || | | || Sbjct 819950 TGACACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATCCCACCAGATCA 820009 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||| | | ||||| ||||| |||||| | || || || |||| | | || ||||| Sbjct 820010 ACAGCGTTTGATCTTCGCTGGTAAACAATTGGAGGACGGAAGAACTCTTTCAGACTACAA 820069 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||| || || || || || ||| | || | ||| | ||||||||| Sbjct 820070 CATTCAAAAAGAGTCCACCCTCCATCTCGTTCTTCGTCTTCGAGGAGGA 820118 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || || | ||||| |||| ||||| ||||| || | ||| || ||| | Sbjct 821030 AATGCAGATTTTCGTCAAAACCCTAACTGGCAAGACCATCACACTCGAAGTAGAGGCCTC 821089 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | | ||| ||||| || || ||||| | ||| | | || Sbjct 821090 TGACACAATTGAAAACGTCAAGGCCAAAATCCAGGACAAGGAGGGCATTCCTCCAGATCA 821149 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||| | | ||||||||||| |||||||| |||||| | |||| || |||| ||||| Sbjct 821150 ACAGCGTTTGATCTTTGCTGGTAAACAACTGGAAGATGGTAGAACTTTGTCCGACTACAA 821209 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||| |||||||| || || |||| | ||| | |||| || Sbjct 821210 CATCCAGAAAGAATCTACACTCCACTTGGTTCTTCGTCTCAGAGGTGG 821257 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 ||||||||||| | ||| | ||||||| | || ||||| ||||| |||||| | ||| Sbjct 820668 GATAAAGAGGGAATTCCTCCAGACCAACAACGTCTCATCTTCGCTGGTAAACAATTGGAA 820727 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| | ||| | | || ||||| || ||||||||||| ||||| || |||| || Sbjct 820728 GATGGCAGGACTCTCTCAGACTACAACATCCAGAAGGAATCCACTCTGCACTTGGTCCTA 820787 Query 22047 CGTTTACGAGGAGG 22060 ||| | ||||| || Sbjct 820788 CGTCTTCGAGGTGG 820801 >seq676 Length=265522 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 21831 AAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCC 21890 |||||||| ||||| | ||||| | |||||||| ||||| ||| | || || ||| Sbjct 178557 AAAATGCAGATATTCGTGAAAACGCTGACGGGCAAGACCATCACCCTCGAGGTCGAGGCC 178498 Query 21891 GCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAAC 21950 | || || | | | | ||| ||| || ||||| ||||| | || | || Sbjct 178497 TCTGATACCATCGAGAACGTGAAGGCAAAGATCCAGGATAAGGAGGGAATTCCCCCAGAC 178438 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || |||||||| ||||| ||||| |||||| | ||||| ||| | | |||||| Sbjct 178437 CAGCAGAGACTGATCTTCGCTGGAAAACAATTGGAAGACGGTCGCACTCTTTCTGATTAC 178378 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || |||||||||||||||||||| |||| | || | || ||||| Sbjct 178377 AACATCCAGAAGGAATCTACTCTTCACTTGGTCCTTCGACTTCGTGGAGG 178328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358107481084672