Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_009382.1 Length=38760 Score E Sequences producing significant alignments: (Bits) Value seq2614 118 3e-22 seq3842 116 9e-22 seq3204 89.7 1e-13 >seq2614 Length=3563 Score = 118 bits (130), Expect = 3e-22 Identities = 217/318 (68%), Gaps = 0/318 (0%) Strand=Plus/Minus Query 22968 GCCGTGGCGGTGCTGGGCCGGGTGCTGCTGCTGAACCCGATTGGCCTGCTGGTGACGGCA 23027 |||||| | | |||| |||| ||| |||| || || ||||| |||||| | || | Sbjct 3029 GCCGTGCTGTTTATGGGTCGGGCACTGATGCTTAATCCCATTGGGCTGCTGATCACCGGT 2970 Query 23028 ATTGCGGTCGCGGCCTACCTGATCTACCGGTACTGGGAGCCGATCAGCGCCTTCTTCTCG 23087 ||||| |||| || | |||||| || || ||||||| ||| || ||||||| ||| Sbjct 2969 ATTGCTGTCGGCGCTTTCCTGATTTATCGCTACTGGGGGCCAATTAGCGCCTGGTTCAAA 2910 Query 23088 GGGCTGTGGCAGCAGGTGAAGACGGCGTTCGACGGCGGCATCGCCGGTGTGTCCGCACTG 23147 | | ||| | | | || |||||| ||||||||||| ||||| | || ||| Sbjct 2909 GCCCGCTGGGCGGATATCAAACAGGCGTTTTCCGGCGGCATCGGTGGTGTCGCAGCGCTG 2850 Query 23148 ATCCTGAACTGGTCGCCGGCGGGCCTGTTCTACGCCGCGCTCGCGCCGGTGTTGCAGTGG 23207 || | ||||||||||||| ||| |||||||| ||| ||||| || ||| | Sbjct 2849 ATTATCAACTGGTCGCCGGTGGGGCTGTTCTATAAGGCGTTCGCGGGCGTCATGCGCTAT 2790 Query 23208 TTCGGGTTCGACGTGCCGGCCAAGTTCACCGAGTTCGGCGCCAACATCGTGCAGGGGTTG 23267 ||| | || | || ||||| || ||||| ||||| |||| | | |||| || Sbjct 2789 TTCACTATTGAGTTACCTGCCAATTTTACCGATTTCGGTCGCAACCTGATTGAGGGACTG 2730 Query 23268 GCCAACGGCATCCGCAGC 23285 | || ||| || |||||| Sbjct 2729 GTCAGCGGTATTCGCAGC 2712 >seq3842 Length=22882 Score = 116 bits (128), Expect = 9e-22 Identities = 214/312 (69%), Gaps = 20/312 (6%) Strand=Plus/Plus Query 13937 TCCAACGGCGTAGTCCTGGACAAGCACGACCACGGCGGCGTGCAGCACGGCGGCGACTGG 13996 ||||||||||| | ||||| |||| ||| |||| || |||||||| ||| ||| Sbjct 19913 TCCAACGGCGTGCAGATTGACAATCACGGCCATGGCGCAGTACAGCACGGTGGCAGTTGG 19972 Query 13997 ACGGAGGGCACGCGGTGA------------CCGGCATGAACAACGCTACCGGGCGCGCGC 14044 ||||||||||| |||| ||||||||||| || || |||| || Sbjct 19973 ACGGAGGGCACCAAGTGAGCGCGCGTTATACCGGCATGAACCCCG--AC--GGCGTTGGC 20028 Query 14045 TTGCCGACCAG--CCG--CATGTGGTGCAGTCGGTGCGCGACATCCTCTCCACGCCGATC 14100 | | ||| ||| || | ||| || ||||||||||| || |||| ||| | Sbjct 20029 GTACTGACGGATACCGATCAGTTATGGCATTCCGTGCGCGACATTCTGACCACACCGCTG 20088 Query 14101 GGCTCGCGCGTGATGCGCCGCGACTACGGCAGCCAGGTCCCCGACTTGATCGATCAGCCG 14160 | || ||||| |||||||| || |||||||| | ||| || |||||| | ||| |||| Sbjct 20089 GCGTCCCGCGTCATGCGCCGTGAATACGGCAGTCTGGTGCCTGACTTGCTGGATGCGCCG 20148 Query 14161 TTGAACCCGGCAACCCGCCTGCGCACCATGTCCGCCGCCGTGTCTGCCCTGGTGCGCTGG 14220 |||| | ||||| || |||| ||| ||| |||| |||||||| ||||||| Sbjct 20149 CAGAACGCCGCAACACGACTGCAATTGATGAGCGCGTGCGTGATTGCCCTGGCGCGCTGG 20208 Query 14221 GAGCCGCGTATC 14232 ||| |||| ||| Sbjct 20209 GAGTCGCGGATC 20220 Score = 84.2 bits (92), Expect = 5e-12 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 3026 GGCTTCACCTCGTTGCGCGCGAACACCATCGCCGCCTTCTCCACGTCGCCGAATCCGCCG 3085 ||| ||| |||||| || |||||| ||| || ||||| ||||| |||||| |||| Sbjct 10432 GGCATCAGTTCGTTGATGGCAAACACCCGCGCGGCTTTCTCAACGTCACCGAATGAGCCG 10491 Query 3086 GTGTTGTTCGGAATGATGCCCATGAGCTGCGGCGGTACGCGGTGCGCGGCGAGCTGGTCG 3145 | | ||| ||| ||||| || || ||||| || ||||||||||| || ||| Sbjct 10492 TCGCCCTCCGGCATGGCCCCCATCAGTTGTGGCGGCACACGGTGCGCGGCAAGGATATCG 10551 Query 3146 TCGCGCGTGACGTTCTTGATGTTCCAGAACTCGTCCTTCGC 3186 || || || || ||||| ||| ||||||| ||||| || Sbjct 10552 TCACGGGTAACCGATTTGATATTCAAGAACTCATCCTTGGC 10592 Score = 80.6 bits (88), Expect = 7e-11 Identities = 162/236 (69%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 4876 GCGCCGGACCAGAACGGATAGGCCTCATGCGACAAGCTGGACGGCGTGGAGAAGTAGGTC 4935 ||||| | ||||||||| ||||| ||||| | ||||| ||||| ||||| ||||| Sbjct 12279 GCGCCCGTCCAGAACGGGTAGGCTTCATGGGTTTCACTGGAGGGCGTAGAGAAATAGGTG 12338 Query 4936 TGACGCCAGTGCTTGT-GGATCGCCATGCCGGAGGCGACCTTGCGCAGTTCCTGGAAGCG 4994 | | ||| ||| || | ||||| | |||||| || ||||| | ||| | | Sbjct 12339 CGG-GTGAGTCCTTTCAGGGTTGCCATCGCCCCGGCGACTTTACGCAGGT--TGGCAAAG 12395 Query 4995 CGGCAC--CCAGAAGTATTCATCGAAGTACAGGTTGCCGTGATACGACTGCGCGGTGCGG 5052 || ||||||| | ||||| ||| ||||||||||| ||| ||||| || || | Sbjct 12396 TTGCTTGTCCAGAAGAACTCATCAAAGAACAGGTTGCCGGTATAAGACTGTGCAGTAGCG 12455 Query 5053 GCGTTCGTGCCGAGAAAGTAGAGCGTGGCGCCGTTGGGCAGCACCATCGGATCGCC 5108 || ||||||||||| | ||| ||||| || |||||| || |||||| Sbjct 12456 GCAGAGGTGCCGAGAAAATGCAGCTCTGCGCCATTACTCAGCACAATTTTATCGCC 12511 >seq3204 Length=7776 Score = 89.7 bits (98), Expect = 1e-13 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 19504 ATCGACAACGACACCGGCTGGCACAAGACGCTTTCCAACGTGGCGGTGGGCGGCGTGACC 19563 ||||||||||| |||||||||||| | || ||||| ||| ||||| |||| | Sbjct 2399 ATCGACAACGATCAGGGCTGGCACAAGTCACTGTCCAATGTGCCGGTGAATAACGTGCTC 2458 Query 19564 GGTCTGTCGCGCGACGTGTTCTGGGACCTTCAGGACCCGGCGACCGACGCGGGCTACCTG 19623 ||| | || || || ||||||||| ||||||| | | | |||||| | ||| Sbjct 2459 GGTATTTCCCGTGATGTGTTCTGGTCACTTCAGGCCGAAGATAGCGACGCCAACGCGCTG 2518 Query 19624 AACGCCAACGAGGTGACCACGCTGGTTCACCGCGACGGCTACCGCTTCTGGGGC 19677 ||| ||| ||||| ||||||||| || | ||| |||| | || || |||||| Sbjct 2519 AACAGCAAAGAGGTCACCACGCTGATTAAACGCAACGGTTTTCGTTTTTGGGGC 2572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123904561341952