Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq434 113 4e-20 >seq434 Length=366605 Score = 113 bits (124), Expect = 4e-20 Identities = 87/100 (87%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTG--AGTAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| ||||||||||||| || |||| ||||||||||| Sbjct 107549 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGAGTACGATCTAAGGAA 107490 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 ||| ||||||| || ||||||||||| ||| || ||||| Sbjct 107489 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 107450 Score = 113 bits (124), Expect = 4e-20 Identities = 87/100 (87%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTG--AGTAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| ||||||||||||| || |||| ||||||||||| Sbjct 107549 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGAGTACGATCTAAGGAA 107490 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 ||| ||||||| || ||||||||||| ||| || ||||| Sbjct 107489 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 107450 Score = 107 bits (118), Expect = 2e-18 Identities = 86/100 (86%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTG--AGTAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| ||||||||||||| || |||| ||||||||||| Sbjct 296201 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGAGTACGATCTAAGGAA 296142 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 ||| |||||| || ||||||||||| ||| || ||||| Sbjct 296141 CCATGACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 296102 Score = 107 bits (118), Expect = 2e-18 Identities = 86/100 (86%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTG--AGTAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| ||||||||||||| || |||| ||||||||||| Sbjct 296201 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGAGTACGATCTAAGGAA 296142 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 ||| |||||| || ||||||||||| ||| || ||||| Sbjct 296141 CCATGACTGATTTAATGAGCCATTCGCGGTTTCACCTTAA 296102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397043198062336