Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_009514.1 Length=47021 Score E Sequences producing significant alignments: (Bits) Value seq3702 370 3e-98 seq2705 352 9e-93 seq2652 235 2e-57 seq2837 176 1e-39 seq3009 122 3e-23 seq2238 104 7e-18 >seq3702 Length=11964 Score = 370 bits (410), Expect = 3e-98 Identities = 992/1487 (67%), Gaps = 67/1487 (5%) Strand=Plus/Plus Query 43919 CAGTAATGGCGGTTTCCT-GCTGTGAAAATGGGCGGCTGGTGGGTGTTGGTAGCACCTG- 43976 ||||||||| | ||||| || |||||| |||||||||||||| ||||||||||| | | Sbjct 10509 CAGTAATGGGGCATTCCTTGCAGTGAAA-TGGGCGGCTGGTGGATGTTGGTAGCATCCGA 10567 Query 43977 CCAGCCATTCGCTCATGCTTACTGGTCACAAGCGAACCACGGCCCACTGCTTTAGCGCA- 44035 |||||||||||||| | | | |||||| |||||||| ||||||| |||| | ||| Sbjct 10568 CCAGCCATTCGCTCGTTGTAAA-GGTCACGGGCGAACCAAGGCCCACCGCTTATGTGCAC 10626 Query 44036 AAAGCAGAGTGAGCCTACCAGA---GTTACGCTTACTGATCCATGAAAAATACTGTAAAA 44092 ||||| | ||||||| || | | || ||| ||||||||||||||||||||| Sbjct 10627 AAAGCGGTAGGAGCCTATCAAAAAAGGCCCGTTTA---ATCCATGAAAAATACTGTAAAT 10683 Query 44093 ATAAACAGTGTTGATTTAATCAACGCTGATTGCCTGCATTTTATTCAGTCCCTGCCTGAT 44152 |||||||||| | | | || || || | |||| || ||| || || |||||||| Sbjct 10684 TTAAACAGTGTGAACATTGTTAATGCAGACTCATTGCAATTCATTAAGACCTTGCCTGAT 10743 Query 44153 GATTCCATTGACCTGATTGTTACCGATCCGCCTTACTTCAAGGTGAAACCCAACGGTTGG 44212 | | |||||||||||| | || || || || || | | ||| ||| |||||| ||| Sbjct 10744 AACTGCATTGACCTGATAGCAACGGACCCACCGTATTACCGGGTTAAATCCAACGCCTGG 10803 Query 44213 GACAATCAGTGGAAAGGGGACGAAGATTACCTTAAGTGGCTGGAC-CACTGTCTGGCCCA 44271 || |||||||||||| |||| |||||| ||||| ||| || ||| | | | Sbjct 10804 GATAATCAGTGGAAATCATCGCAAGAGTACCTTGCCTGGCTTGACGCAATGT-TTGTGGA 10862 Query 44272 GTTCTGGCGGGTGTTGAAACCTGCCGGAAGCCTTTACCTGTTCTGTGGGCATCGCCTAGC 44331 ||||||||| || | |||||||| || || || || ||||||| || | ||| || Sbjct 10863 GTTCTGGCGTGTACTAAAACCTGCGGGGAGTCTGTATGTGTTCTGCGGCTGGCACCTTGC 10922 Query 44332 ATCTGATATTGAGATCATGATGCGTGAACGTTTCAACGTGCTTAACCATATCATCTGGGC 44391 | |||||||| | | |||||||| || || | || || || || ||||| ||||| Sbjct 10923 CGCAAATATTGAGCTACTCATGCGTGAGCGGTTTGATGTTCTGAATCACATCATATGGGC 10982 Query 44392 GAAGCCGTCCGGACGTTGGAATGGGTGTAATAAAGAAAGTCTGCGCGCATATTTTCCTGC 44451 || || || || || ||||| || || | || ||| | | || | || || || || Sbjct 10983 CAAACCCTCTGGGCGCTGGAACGGTTGCAGGAAGGAAGATTTACGGTCTTACTTCCCGGC 11042 Query 44452 CACAGAGCGCGTTCTGTTTGCTGAACATTACCAGGGGCCATATCGCGGCAAAAGTGACGG 44511 || || || | ||||||||| | || || ||| || ||| ||| |||| || Sbjct 11043 AACTGAACGAATCCTGTTTGCTCAGCACTATGCGGGACCCTATAAACCAAAAGGTGATGG 11102 Query 44512 CTATGCGGCAAAAGAAAGGGAACTCAAACAGCACATAATGGCACCGCTGATATCGTATTT 44571 || | |||| || || | || | | | | || ||||| ||||| Sbjct 11103 GTACGTTTTAAAATGCAGTGAGTTGAAGCGTGATGTTTTCCGGCCCCTGATTGATTATTT 11162 Query 44572 CAGGGATGCTCGTGCCGAACTG--GGTATAACGGCAAAACAAATTGCCGAAGCCACAGGT 44629 | | | || ||||| | ||| ||| | | |||| | || || || || ||| Sbjct 11163 CCGTAACGCGCGTGCAGCGCTGAAGGTGT--CATCAAAGGATATCAACGCGGCTACGGGT 11220 Query 44630 AAGAAAAATATGGTTTCCCACTGGTTTGGTGCCAGTCAGTGGCAGTTGCCGAATGAGGCT 44689 ||| | |||| || || ||||| ||| ||| |||||||| | || | ||| | Sbjct 11221 AAG---CAGATGGCGTCACATTGGTTCAGTGACAGCCAGTGGCAACTACCCAGTGAAGTG 11277 Query 44690 GACTATCGGAAGTTACAGGCACTGTTTTCCCGTATAGCGGCAGAGAAGTTTCAGGA-ACA 44748 || || | ||| |||||||| ||||| | ||| |||| || || ||| | | || Sbjct 11278 GATTACCAGAAATTACAGGCGTTGTTTACGCGTGTAGCTGC--CAAACGTTCTGAACTCA 11335 Query 44749 A-CAACTGGAACAACCACACCACCAGCTGGTGGCATCTTATGATT-CACTG---AAT--C 44801 | | || || ||| |||||| |||||||| |||||| ||| | || | Sbjct 11336 ACCGCCTTGATAAACAGCACCACACGCTGGTGG------ATGATTACACAGCCCTATCGC 11389 Query 44802 GCAAATATTCTGAATTGCTGGATGAGTTTAAATCTCTCCGGCGCTATTTCTCCGTATCAG 44861 || ||| || || || ||| || | | || ||| ||||| ||| | ||||| | Sbjct 11390 GCCGATACTCCGATCTGGTGGCCGAATATGAAAGTCTGCGGCGTCCGTTCACGGTATCCG 11449 Query 44862 TCTCCGTGCCTTATACCGATGTCTGGATGCATAAACCCGTTCAGTTCTACCCGGGTAAAC 44921 ||||| || |||||||| |||| | | || || |||||||||| || || | Sbjct 11450 CACTGGTGCCATACACCGATGTGTGGACGTACCCGCCAGTGCAGTTCTACCTAGGCAAGC 11509 Query 44922 ATCCGTGTGAGAAACCTGCGGATATGCTCCGGCAAATAATCAATGCCAGTAGTCGACCTG 44981 |||| ||||| |||||||| || ||| | | | || || ||| || ||||| |||| Sbjct 11510 ATCCATGTGAAAAACCTGCTGAGATGATGCATGAGATTGTCTCTGCAAGCAGTCGTCCTG 11569 Query 44982 GTGATCTGGTTGCTGAtttttttATGGGATCCGGTTCCACAATAAAAGCAGCAATGGCGC 45041 ||||| |||| |||||||| || ||||| || || | || || ||||| || || | Sbjct 11570 GTGATGTGGTGGCTGATTTCTTCATGGGCTCAGGGGCAACGATTAAAGCCGCTATTAAGT 11629 Query 45042 TGGGGCGTCGGGCCTTAGGTGTTGAGCTTGAGTCAGAGCGGTTTAACCAGACAGTGAAAG 45101 | ||||| | || | || |||||| |||| |||||| | || || ||| Sbjct 11630 TAGGGCGCCATGCACTTGGCGTTGAGTTTGAAGAAGAGCG--------ATACCGTCAAA- 11680 Query 45102 AGATAAACG-AGCTG-GTGGGGAAATA-ATCTGGTGGC-CACGTAGGTGGCCTTTTTATT 45157 || ||| | || || | ||| | | |||| ||| || | |||||||| Sbjct 11681 CGAAAAATGAAGTTGAATCATTAAAAACAGACCCTGGCTAACGCCGGGG---TTTTTATT 11737 Query 45158 TCCATT-------ACACAG---CACCCGCAT-CTGCGAGGT-GGGGTTATGAAATCCATG 45205 |||||| |||||| || ||| || | ||||| | || |||| ||| || Sbjct 11738 TCCATTAAATCACACACAGCGCCATCCGAATAATCGGAGGTAGAGGCTATGCAAT---TG 11794 Query 45206 GATAAGTTAACAACGGGTGTCGCCTATGGCACCTCAGCAGGTAGTGCCGGGTACTGGTTT 45265 || || |||| || || || | || ||| | || | | || | ||| |||||| | Sbjct 11795 GACAAAATAACCACTGGCGTTTCGTACGGCGCATCGGGTGTAAGCGGCGGTTACTGGATG 11854 Query 45266 TTACAGTTGCTCGATAAAGTCACGCCCTCACAGTGGGCGGCAATAGGTGTGCTGGGTAGT 45325 | || || ||||||| || |||| |||| |||||||| | || || || |||| Sbjct 11855 CTGCAATTACTCGATACCGTATCGCCGACACAATGGGCGGCGCTGGGCGTACTCAGTAGC 11914 Query 45326 CTGGTATTTGGCTTGCTGACGTATCTGACAAACCTTTATTTCAAGAT 45372 ||||||||||| |||| || | |||||| ||||| |||||||| || Sbjct 11915 TTGGTATTTGGCCTGCTTACTTTTCTGACCAACCTCTATTTCAAAAT 11961 >seq2705 Length=2265 Score = 352 bits (390), Expect = 9e-93 Identities = 393/522 (75%), Gaps = 2/522 (0%) Strand=Plus/Plus Query 38525 GAAGTGGGCGATCAGTGGCGCACGCCGGATAACATTTTCTGGGGAATTAACACCCTGTTT 38584 || || || || |||||||||||||| ||| | | | ||||| ||||| || ||| Sbjct 1437 GACGTAGGAGACCAGTGGCGCACGCCTGATGATCTCTGGTGGGGCATTAATGCCAGATTT 1496 Query 38585 GGCCCGTTTGTTCTGGATCTGTTCACTGATGGTGATAACGCCAAATGTGCCGCTTATTAC 38644 ||||||||||||||||||||||| |||| ||||||| ||||| | | | ||| Sbjct 1497 GGCCCGTTTGTTCTGGATCTGTTTGCTGACAACCATAACGCAAAATGCGAAGACTTTTAT 1556 Query 38645 ACTGCGGAAGACAACGCGCTGGCGCATGACTGGTCAGAACGTCTTGCGGAGCTTAAAGGT 38704 || || || || || ||||| |||| |||||||| | ||||| || || || ||| Sbjct 1557 ACGGCAGAGGATAATGCGCTAACGCAAGACTGGTCTGCCCGTCTGGCAGAACTCGGCGGT 1616 Query 38705 GCTGCCTTTGGTAATCCCCCATACAGCCGCGCTAGTCA-GCATGAGGGGCAATACATCAC 38763 || |||| | ||||| || ||||||||||| | || ||| || |||||||||||||| Sbjct 1617 GCCGCCTACGCCAATCCACCCTACAGCCGCGC-ATCCAGGCACGAAGGGCAATACATCAC 1675 Query 38764 CGGCATGCGTTACATCATGAAGCATGCCAGTGCCATGCGTGATAAGGGCGGGCGCTATGT 38823 || ||| | |||||||| |||| ||| || |||||||| || || || ||||| Sbjct 1676 AGGTATGACTCACATCATGCAGCACACCATGGCAATGCGTGAGGCTGGTGGCCGTTATGT 1735 Query 38824 TTTCCTGATCAAAGCTGCCACCAGCGAAGTTTGGTGGCCGGAAGATGCAGACCATATTGC 38883 |||||| ||||| || ||||| || ||| |||||||| ||| |||| || |||||||| Sbjct 1736 TTTCCTCATCAAGGCGGCCACGAGTGAAAGCTGGTGGCCTGAAAATGCCGATCATATTGC 1795 Query 38884 TTTTATTCGCGGGCGTATTGGTTTTGAACTGCCTGCCTGGTTTATCCCGAAGGATGAGAA 38943 |||||| || ||||| |||| ||||| || || | |||||||||||| || || || Sbjct 1796 TTTTATCCGTGGGCGAGTTGGGTTTGAGCTTCCCGACTGGTTTATCCCTGCTGACGAAAA 1855 Query 38944 GCAGGTGCCGACAGGCGCTTTCTTCGCTGGTGCTATTGCTGTTTTCGACAAGACCTGGAA 39003 |||| ||| | ||||||||||||||||| || |||||||| || || || | |||||| Sbjct 1856 GCAGAAACCGTCTGGCGCTTTCTTCGCTGGAGCCATTGCTGTCTTTGATAAAAGCTGGAA 1915 Query 39004 GGGACCGGCAATCAGCTACATCGGGCGCGATGAACTTGAGGC 39045 ||| ||||| ||||||||| | ||| | ||||| | ||||| Sbjct 1916 GGGCCCGGCTATCAGCTACGTGGGGAGAGATGAGTTGGAGGC 1957 >seq2652 Length=1620 Score = 235 bits (260), Expect = 2e-57 Identities = 295/402 (73%), Gaps = 2/402 (0%) Strand=Plus/Minus Query 38642 TACACTGCGGAAGACAACGCGCTGGCGCATGACTGGTCAGAACGTCTTGCGGAGCTTAAA 38701 ||| | || || || || ||||| |||| |||||||| | ||||| | || || Sbjct 1579 TACCCGGCAGAGGATAATGCGCTAACGCAAGACTGGTCTGCCCGTCTGACAGAACTCGGC 1520 Query 38702 GGTGCTGCCTTTGGTAATCCCCCATACAGCCGCGCTAGTCAG-CATGAGGGGCAATACAT 38760 ||||| |||| | ||||| || ||||||||||| | ||| || || ||||||||||| Sbjct 1519 GGTGCCGCCTACGCCAATCCACCCTACAGCCGCGC-ATCCAGGCACGAAGGGCAATACAT 1461 Query 38761 CACCGGCATGCGTTACATCATGAAGCATGCCAGTGCCATGCGTGATAAGGGCGGGCGCTA 38820 ||| || ||| | |||||||| |||| ||| || |||||||| || || || || Sbjct 1460 CACAGGTATGACTCACATCATGCAGCACACCATGGCAATGCGTGAGGCTGGTGGCCGTTA 1401 Query 38821 TGTTTTCCTGATCAAAGCTGCCACCAGCGAAGTTTGGTGGCCGGAAGATGCAGACCATAT 38880 ||||||||| ||||| || ||||| || ||| |||||||| ||| |||| || ||||| Sbjct 1400 TGTTTTCCTCATCAAGGCGGCCACGAGTGAAAGCTGGTGGCCTGAAAATGCCGATCATAT 1341 Query 38881 TGCTTTTATTCGCGGGCGTATTGGTTTTGAACTGCCTGCCTGGTTTATCCCGAAGGATGA 38940 ||||||||| || ||||| |||| ||||| | |||| |||||| | || || || Sbjct 1340 TGCTTTTATCCGTGGGCGAGTTGGGTTTGATGTTCCTGATTGGTTTGTACCTGCTGACGA 1281 Query 38941 GAAGCAGGTGCCGACAGGCGCTTTCTTCGCTGGTGCTATTGCTGTTTTCGACAAGACCTG 39000 || || |||| ||||||||||||| || || |||||||| || || ||||| | ||| Sbjct 1280 TAAACAAAAGCCGTCAGGCGCTTTCTTTGCAGGAGCTATTGCCGTCTTTGACAAAAACTG 1221 Query 39001 GAAGGGACCGGCAATCAGCTACATCGGGCGCGATGAACTTGA 39042 | ||||| | | |||||||||| || || ||||| || Sbjct 1220 GCGTGGACCCTCGACCAGCTACATCAATCGTGAAGAACTGGA 1179 >seq2837 Length=20053 Score = 176 bits (194), Expect = 1e-39 Identities = 418/621 (67%), Gaps = 18/621 (3%) Strand=Plus/Minus Query 27782 GATATCACGGGTAAAGATATGGATATCCGTAAAGGTCAGAAGAA--ACGGTTTCTGGCAC 27839 || || ||| |||||||| | || || |||||||| |||| |||| | | | | Sbjct 815 GAAATAACGAGTAAAGATTTAGACATAAGTAAAGGT--GAAGGTTCACGGGTGTTAGACC 758 Query 27840 ATGATGAAATTAAAATCCTTTATGC-TGCGATCGATGGTTCTCGAATGGTTCCTAAATAC 27898 | | ||||| | || |||||||| ||| || |||| || | |||||||| |||||| Sbjct 757 CTAAAGAAATCAGTATTCTTTATGCCTGCATTC-ATGGCTCAAGGATGGTTCCAAAATAC 699 Query 27899 CGGGCCTTCATTAAACTATTGCTGCATTTTGGCTGCCGTAGTTCAGAGCTAATTACC--- 27955 ||||| | ||| | ||||||||||| || ||| || | | |||| | Sbjct 698 AAAATATTCATAGAGCTACTTCTGCATTTTGGGTG---TAGGTCGG-GTGAATTGCTAAA 643 Query 27956 -GCTAGGGTGGATGATTTTGATTTCATTAATAAGGTATGGACTGTACCGCC--AGAACGA 28012 || | || || | || || | || |||||| |||||||||| ||||| |||| | Sbjct 642 TGCCAAAGTAGAACACTTCGACCTTATCAATAAGATATGGACTGTTCCGCCCGAGAATCA 583 Query 28013 CATAAGACAGGGGATATAACAGGCGAACCGCTAAAGCGCCCCATTATTGAACCGGTTGAA 28072 || ||| | || | |||||| | || | ||||| || ||||| | || |||| Sbjct 582 CA-AAG-CTGGCTTAGTTACAGGCAGATCGTTGAAGCGGCCTATTATCCCGCAGGCTGAA 525 Query 28073 GAGCTTATAAAGTACGTTATCTCTATGAACAATGGTTCCGATATGCTTTTTACTAAGGAA 28132 | | || | |||||| | ||||| | ||| || | | |||| || || ||| Sbjct 524 AAATTAATCGAAGCCGTTATTGCCATGAATAGTGGATCTACTTTTGTTTTCACAAAAGAA 465 Query 28133 GGAAGCAGGGAACCCGTTGGCCGGACATCATTGCAGTCGCTGCCTTACAATTTAATGCAG 28192 |||| | |||| || | || |||| | | ||| || || || | |||||| Sbjct 464 GGAAAAAAGGAAGTTGTAAGGCGCTCATCTCTTTCGCCGCGACCCTATAACATTATGCAG 405 Query 28193 TACGCATGGCGGCGTTTGGGGTATCAATTCCCTCATTGGTCTCTTCATGATTTGAGACGA 28252 || || ||||| | |||| || | ||| ||||| ||||| ||||||||| | ||| | Sbjct 404 TATGCTTGGCGTAGGTTGGATTACCGATTTCCTCACTGGTCGCTTCATGATCTCAGAAGG 345 Query 28253 ACAGCACGAACAAACTTTTCTGATCTTACTGCACCTCATATTGCAGAAATAATGCTCGGT 28312 || || |||||||| || ||||| || | || ||| | || ||||||||| | || Sbjct 344 ACGGCCCGAACAAATTTCTCTGACTTTGTCGAGCCGCATGTGGCCGAAATAATGTTAGGG 285 Query 28313 CATAAACTGCCAGGGGTATGGCAGGTTTATGACAAGAGCGATTATTTAGATGAACAGCGT 28372 ||||||||||| || || |||||||| |||||||| || || || | || || || || Sbjct 284 CATAAACTGCCCGGCGTGTGGCAGGTGTATGACAAAAGTGACTACCTGGACGAGCAACGA 225 Query 28373 AAAGCTTACCAGGCATGGTGG 28393 ||||| || | |||||||| Sbjct 224 AAAGCATATTCGACATGGTGG 204 Score = 80.6 bits (88), Expect = 8e-11 Identities = 99/134 (74%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 30807 CGTTACTCAATAACTCCCGCAAATTTGTAAATCTTGCGTGATGCCCATTTATTTGGGCAT 30866 || ||||||||||| || | |||||| | ||| || ||| |||||| || || ||| Sbjct 177 CGCTACTCAATAACACCGGAAAATTTATGAATTTTATGTGTTGCCCAGCGGTTAGGACAT 118 Query 30867 GATTTAATATCAGGATCTGGAAAGTCTGGCCTGTATTTCTGGCCAGTTCTCCTGTTTACG 30926 || ||||| || ||||| ||||| ||||| | | ||| | || ||| | | ||| ||| Sbjct 117 GACTTAATGTCTGGATCGGGAAAATCTGGGC-GATTTTTTTACCTGTTTTACGGTTGACG 59 Query 30927 CTGTTCCAGCGAAG 30940 || |||||||| || Sbjct 58 CTATTCCAGCGCAG 45 >seq3009 Length=1481 Score = 122 bits (134), Expect = 3e-23 Identities = 124/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 41392 TGAAAAGTACACGCGCTGGGTTAAGACACAGCCGTGTGCATGTTGTGGAAAGCCCGCTGA 41451 ||| |||||||| |||||||| ||| |||||| |||||||| ||||| || ||||| Sbjct 482 TGAGAAGTACACCCGCTGGGTGAAGTCACAGCAATGTGCATGCTGTGGCGCTCCTGCTGA 541 Query 41452 TGATCCCCACCACCTGATAGGCCACGGTCAGTGTGGAATGGGTACAAAAGCGCATGACCT 41511 ||||| |||||| | ||||| |||| | | || |||||||||||| |||||||||| Sbjct 542 CGATCCGCACCACGTAATAGGGTACGGGCTTGGCGGGATGGGTACAAAAACGCATGACCT 601 Query 41512 TTTTGTGTTGCCTTTGTGCAGAAAGCATCACGACGAGCTGCA 41553 ||||| | || ||||| | | || ||||| ||||| || Sbjct 602 GTTTGTTATTCCCCTGTGCCGCCACCACCACGATGAGCTACA 643 >seq2238 Length=3333 Score = 104 bits (114), Expect = 7e-18 Identities = 109/141 (77%), Gaps = 8/141 (6%) Strand=Plus/Minus Query 26855 CAAAATGTACAATCAGCGGCATGAATTTTTCTTT-GTACATATGATTGTACATAATCAAA 26913 ||| |||||||||| | ||||||||||||| ||| ||||||||| ||||||||| | || Sbjct 2906 CAAGATGTACAATCCGTGGCATGAATTTTTGTTTTGTACATATGGTTGTACATATTTAAG 2847 Query 26914 GAGACAACAATTATGACAAGCCT---TTTGGCCGCAGAGGTAGCGAAAAGAAGAACCTTT 26970 | |||| | |||| | || || |||||||| |||| | |||||||| ||| Sbjct 2846 GTAACAAGA----TGACTAATCTCTCTTATGCCGCAGAAGTAGAGCGCAGAAGAACATTT 2791 Query 26971 GCAATTATTTCTCACCCCAAT 26991 ||||| |||||||||||| || Sbjct 2790 GCAATCATTTCTCACCCCGAT 2770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150338515715328