Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_009816.1 Length=70579 Score E Sequences producing significant alignments: (Bits) Value seq2631 172 2e-38 >seq2631 Length=39719 Score = 172 bits (190), Expect = 2e-38 Identities = 350/517 (68%), Gaps = 2/517 (0%) Strand=Plus/Minus Query 59909 ATCATCGAACATAAGGTAAGGATAGCCAGACTCAAACTGAACCTCTGCGATGGTCTGGAA 59968 ||| || ||||| | ||| || ||||||||||||||||| | || || | ||||||| Sbjct 33349 ATCTTCAAACATCATGTAGGGGTAGCCAGACTCAAACTGTATTTCGGCCAGAATCTGGAA 33290 Query 59969 CAGCTTTCGAGCGTCGATAAAGGTCTTAGCGATCCTATCATCTTTTAGCCACGTGTCGTA 60028 | || || || | ||| | || ||| | | ||| |||| | | | ||| Sbjct 33289 GAACTCACGCGCCTTGATCTGTGATTTGCGGATGCGTTTATCGTTTACCATCTCATGGTA 33230 Query 60029 CATCTCGGTTACGGAGAACTCGGACAGTGACTTTCCGTACACCTTATTGATGTCATAAGG 60088 | ||||| | ||| || || || | | | || ||||||| | | || || || Sbjct 33229 CTTCTCGCTCACGCTGATTTCCGAGAAGGGCAGGCCATACACCTGTTCCACATCGTAGGG 33170 Query 60089 AGAGAATAGGGCCATAGGCTCGCTCTCCTTGGCAAGGCGGAACGTGACATCAGGAACGAT 60148 |||||| ||| ||| || | | || || | |||| |||| ||| || | | Sbjct 33169 AGAGAACAGGTACATCACCTGGTTGGTTTTCGCCAATTGGAAGGTGATATCCGGGATCAC 33110 Query 60149 AACTCCTAGGGAGAGAGTCTTAATACGGATCTTCTCGTCGGCGTTTTCACGCTTGGTATC 60208 || || || ||||| || ||||| ||||| || || ||||||||||||||||||||||| Sbjct 33109 GACGCCAAGAGAGAGCGTTTTAATCCGGATTTTTTCATCGGCGTTTTCACGCTTGGTATC 33050 Query 60209 CAG-GAACGCAAGGATGTCGGGGTGGTGTGCGTTCAAATATACCGCCCCTGCGCCCTGCC 60267 || ||||||| |||||||| ||||| || || | || || || || ||||| |||| Sbjct 33049 GAGAAAACGCAA-AATGTCGGGATGGTGCGCATTGAGGTAGACAGCACCAGCGCCTTGCC 32991 Query 60268 TTGCACCCAGTTGGTTAGAGTAGGAGAAGCTATCTTCTAGAATCTTCATCACAGGGATGA 60327 |||||||| ||||| | ||||| || ||| || || |||||||| | ||||||| Sbjct 32990 GTGCACCCAACTGGTTGGCATAGGAAAAAGCATCCTCCAGCATCTTCATGATGGGGATGA 32931 Query 60328 CTCCAGAGGCCTGACCTTCTCGACCCTTAATCGGAGCTCCTGCCTCGCGGAGGTTGGAGA 60387 || || | ||| ||| || || ||||| || | | || |||| ||||| | Sbjct 32930 TACCGGAAGACTGGTTTTCAATACGTTTGATCGGTGCGCTAGTTTCACGGATGTTGGTCA 32871 Query 60388 ATCCAATGCCGACTCCGCCACCACGCTTAGACAGCTG 60424 | || | | || ||||| |||||||| || || || Sbjct 32870 AGGTAAAGGCAACGCCGCCGCCACGCTTGGAGAGTTG 32834 Score = 82.4 bits (90), Expect = 3e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 58667 AGGGTAATAGACTCGACCAAGCTTACCCTCCTTGCGAACCTCAACAGGAGAGGTCACAGG 58726 |||||| || || || |||| ||| || || ||||| | ||| | | | || | || Sbjct 34108 AGGGTAGTAAACGCGCCCAATCTTGCCTTCTTTGCGGATCTCGATACGTGACACGATGGG 34049 Query 58727 GTGAATCGAGGCCGTGGCATGGTTAATGTACGAGATAGAGCCGGTTGGTGGGATCGCCTG 58786 |||||| || || |||||||| ||||| ||||| ||||||||||| || | ||| || Sbjct 34048 GTGAATGCTGGAAGTTGCATGGTTGATGTAAGAGATCGAGCCGGTTGGCGGCACCGCTTG 33989 Query 58787 GAGGTTCTGGTTGTA 58801 | ||||||||| || Sbjct 33988 TAAGTTCTGGTTATA 33974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 225717083793920