Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_009818.1 Length=36409 Score E Sequences producing significant alignments: (Bits) Value seq3688 134 3e-27 seq3855 125 2e-24 seq1892 116 9e-22 >seq3688 Length=22785 Score = 134 bits (148), Expect = 3e-27 Identities = 597/920 (65%), Gaps = 43/920 (5%) Strand=Plus/Plus Query 14175 CATCCTGGTCGAGGCCGAACAGGGCAACCTCCAAGCCCAGGCCGAATTGTTCATGGACAT 14234 ||||||| ||||||||| ||||| |||| ||||| || |||| | || || Sbjct 7970 CATCCTGAGCGAGGCCGAGCAGGGGCACCTGGTGCGTCAGGCTGACCTGTTTTTTGATAT 8029 Query 14235 GGAGGAACGCGACGCCCACCTGTTCGCCGAAATGAGCAAGCGAAAGCGCGCAATCCTTG- 14293 |||||| ||||||| |||||| || ||||| ||||||||||| ||| | || || Sbjct 8030 GGAGGAGCGCGACGGCCACCTTTTTGCCGAGATGAGCAAGCGC---CGC-CGTTCGGTGA 8085 Query 14294 -GCCTGG-ATTGGGCGG-TCGAACCCCCGCGTAACGCCTCGGCGGCCGAGAAAGCCGATG 14350 ||| | |||| | | || |||||| | || ||| || |||| ||||| Sbjct 8086 TGCCGCTCACCTGGCGCATTGTGCCGCCGCGTCATCCCAATGCGCAGGA-AAAGGCGATG 8144 Query 14351 CCG-ACTACTTGCACGAGCTATTGCTCGACCTGGAAGGGCTGGAGGACTTGCTGCTCGAT 14409 || || | | ||| || |||||| | | | || ||||| |||| Sbjct 8145 GCGGACGCCGCGACCGAATGGTTTTCAGACCTGCCGGAGTTTGAAACGCTGCTGTTCGAC 8204 Query 14410 GCGTTGGACGGCATCGGCCACGGCTACAGCTGCATTGAACTGGAGTGGGCGCTACAGGGG 14469 | |||||| ||| |||||||||| | | | ||| ||| |||| ||||| | Sbjct 8205 TTGCTGGACGCCATTGGCCACGGCTTTGCCGCCGTGGAAATGGTGTGGAA---ACAGGCG 8261 Query 14470 CGCGAG---TGGATGCCGTTGGCGTTCCACCACCGACCGCAGAGCTGGTTCCAG--CTCA 14524 | ||| |||| | || ||| || | || ||||| ||||||||||| | || Sbjct 8262 GAAAACATCTGGCTGCCCTGTGCCTTCTACAAGCGCCCGCAACGCTGGTTCCAGACCGCA 8321 Query 14525 ACCCCGAAGACCAGAACGAGCTGCGGCTGCGCGACAACAGCCCGGCCGGCGAAGCCTTGC 14584 |||| | |||| |||| | || ||| ||| ||||| | ||| | | | Sbjct 8322 ACCC--ATGACCGTAACGCTATCCGCCTGATTGACGGCAGCCTTGACGGTGCTGAGCTTA 8379 Query 14585 AGCCCTTCGGCTGGATCATTCACCGGCCGCGTGCGCGCTCCGGCTATGTGGCCCGCAGCG 14644 | ||||| |||||| | | || || | | || ||||| || ||| |||| Sbjct 8380 ATCCCTTTGGCTGGCTGCTGCATCGCCATCAGGCCAAAAGCGGCTGGGTAGCCGAAAGCG 8439 Query 14645 GCCTGTTTCGCGTGCTGGCCTGGCCGTACCTGTTTCGCCACTAC-GCCACCTCCGACCTG 14703 | ||||| || || |||| ||| | |||||||| | | || || || |||||| Sbjct 8440 GTCTGTTCCGGGTACTGGTGTGGACCTACCTGTT-CAAGAATATTGCTGCCCGTGACCTG 8498 Query 14704 GCGGAAATGCTGGAAATCTATGGCCTACCGATCCGGCTGGGGAAATAT-CCGCCAGGTAC 14762 |||||| | ||||||||||| ||||| |||| ||| |||| | ||| ||| | || | Sbjct 8499 GCGGAATTTCTGGAAATCTACGGCCTGCCGACGCGGGTGGGCACCTATTCCGACGGGGCC 8558 Query 14763 TGCCGACGAGGAAAAGGCAACCT--TGCTGCGGGCCGTTACCGGCCTGGGCCATGCTGCC 14820 | || || |||||| ||| | ||||| |||| | || |||||| ||| ||| Sbjct 8559 AGT-GAAGAAGAAAAG--AACATGCTGCTGTGGGCGCTGCGCGACCTGGGGCATAACGCC 8615 Query 14821 GCAGGGATCATCCCCGAAACCATGGCCATCGACTTCCAGCAGGCCGCGCAGGGTAGCAG- 14879 | || || |||| |||| || || ||| ||| || ||||| ||||| |||| Sbjct 8616 GGCGGCATTATCCACGAACGCACCGCGATCCGCTTTGAGTCCGCCGCCCAGGG--GCAGG 8673 Query 14880 -CGAGCCGTTCCTGGCGATGATGCGGCAAAGCGAAGACGCCATATCCAAGGCGGTCCTGG 14938 ||| ||||||| | ||||||| | ||||| | || ||||||| | |||| Sbjct 8674 TCGACCCGTTCCAGTATATGATGCAGTGGTGCGAAAGCACCCAGTCCAAGGTCATTCTGG 8733 Query 14939 GCGGCACCCTGACCAGCACCACCAGCCAGTCAGGCG---GCGGCGCTTTTGCCCTGGGCC 14995 ||||||||||||||| | ||| | | | ||| || || | ||||| ||| Sbjct 8734 GCGGCACCCTGACCACC-----CAGGCGGAC-GGCAAGAGCAGCACCAACGCCCTAGGCA 8787 Query 14996 AGGTGCATAACGAGGTTCGGCACGA-CATACTGGCATCCGATGCCCGCCAACTGGCGGCC 15054 | ||||||||||| || || ||||| | || | || |||||| || ||||| | | Sbjct 8788 ACGTGCATAACGAAGTGCGCCACGAGCTGACCGCCA-GCGATGCGGTGCAGCTGGCCGGC 8846 Query 15055 ACGTTGTCCCGCGATCTGCT 15074 ||| || |||| || ||||| Sbjct 8847 ACGCTGACCCGTGACCTGCT 8866 Score = 104 bits (114), Expect = 5e-18 Identities = 161/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 15953 CCGCCTGGATACCATCTACCAGACCAACATGCAGTCGGCCTACATGGCAGGGCGCTAC-- 16010 ||| ||||| ||||| | | ||||| | || || ||||| ||||| |||||||| Sbjct 9714 CCGGCTGGAGACCATTTTTCGCACCAATACCCAATCTGCCTATATGGCCGGGCGCTATCA 9773 Query 16011 GCGGCCGCCTACGAAGCCAGGGAAACCCACCCTTACTGGATGTATGTGGCGGTGATGGAT 16070 ||||| || ||| | || | || |||||| |||||||||||||||||| Sbjct 9774 GCGGCTGCGCGAGAA--CGTCGACCAGCGGCCCTACTGGCAGTATGTGGCGGTGATGGAC 9831 Query 16071 GGCGTTACCCGGGCCAGCCATGCCGCCCTGCATGGGAAAGTGTTCAGGTGGGACGATCCG 16130 || ||||| ||||||||||||| |||||||| |||||| | | |||||| || Sbjct 9832 AGCCACACCCGCCCCAGCCATGCCGCGCTGCATGGCCGGGTGTTCCGTTATGACGATGCG 9891 Query 16131 ATCTGGCAGCACATCACCCCGCCCAATGGCTACAACTGCCGGTGCCGG 16178 |||| | | | ||||| || |||||||||||||| |||||| Sbjct 9892 GGCTGGGATACCCTGTTTCCGCCGAACGGCTACAACTGCCGCTGCCGG 9939 >seq3855 Length=27953 Score = 125 bits (138), Expect = 2e-24 Identities = 228/330 (69%), Gaps = 8/330 (2%) Strand=Plus/Minus Query 19885 AACACCTATGGCTGGCTGGGGCAGTTCCCCAAGCTGCGCGAGTGGATCGGTCAGCGTGTC 19944 || ||||| ||||||||||||||||| ||| | | || |||||| |||| ||| Sbjct 12038 AATACCTACGGCTGGCTGGGGCAGTTTCCCGCGTTCCGGGAGTGGGTCGGCTCGCGCAGT 11979 Query 19945 ATCAAGGACATGGCGGCCCAGGGCTACCAGATCACCAACAAGCTCTTCGAATCGACCGTG 20004 ||| || | ||| || | | |||||| |||| ||||||| || ||| || || Sbjct 11978 ATCCAGCAGATGAAGGTCTATGGCTACGCCATCAACAACAAGACCTATGAAGGCACGGTC 11919 Query 20005 GGCGTAAAACGTACCGACATCGAGGACGACAACCTCGGCGTCTACGGACCGCTCATGCAG 20064 | | | | || || | ||||| ||||| ||||||| || | ||||| | ||| Sbjct 11918 GCCATTACCCGCGATGATTTTGAGGATGACAATCTCGGCGCGTATAGCCCGCTGTTTCAG 11859 Query 20065 GAAATGGGGCGTGCTGCCGGCGCGCATCCCGACGAACTGGTCTT---CGCCCTGCTCAAG 20121 |||||||| || || |||| ||| || || || || ||||| || |||| ||| | Sbjct 11858 GAAATGGGCCGCGCCGCCGCCGCACAACCGGATGAGCTGGTGTTTACCGCCTTGCGC--- 11802 Query 20122 GCCGGCAACGCCAATCTCTGCTACGACGGTCAAAAC-TTCTTCGACACCGATCACCCGGT 20180 | |||||| | |||||||||||| |||| | || || || | ||| || ||||| Sbjct 11801 GACGGCAATAAAACCGACTGCTACGACGG-CAAACCTTTTTTTGATAGCGAACATCCGGT 11743 Query 20181 CTATCCGAACGTGGATGGCACCGGCACGGC 20210 ||||| || || || |||| |||||| || Sbjct 11742 GTATCCCAAGGTCGACGGCAGCGGCACCGC 11713 >seq1892 Length=4253 Score = 116 bits (128), Expect = 9e-22 Identities = 177/252 (70%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 11753 ATGGCGCACCCGAAGGAAACCCGCGACGCCCTGCGCCGCGCCTACGTCCTCGACCGCCAG 11812 |||||||||||| |||||| ||||||| | ||||| || ||||| | ||| | | Sbjct 391 ATGGCGCACCCGCAGGAAATCCGCGACACGCTGCGACGGGCCTATATTTTCGGGCAGATG 332 Query 11813 TCCCTGGAGGTCGCGGCCGCCATGTTCGGCGTCTCCTACGGCACCGCCCGCCGCTGGAAA 11872 ||||| ||| | || ||||| | ||||| | | ||| || || || ||||||||| Sbjct 331 TCCCTTGAGATTGCCGCCGCGCAATCGGGCGTTGCGTTCGGAACGGCACGGCGCTGGAAA 272 Query 11873 CAGCAGGCGGAAGCCGAGGGGGACGACTGGGACAAGGCGCAATCGGCGCAGTTGCTGGCC 11932 | | || | | || ||| || |||||||||||| || | ||||| || |||| Sbjct 271 AAAGACGCTCAGGACGCGGGTGATGACTGGGACAAGCAGCGGGCTGCGCATATGATGGCG 212 Query 11933 GGTGGTGGACTGGAGGACGTGGCGCGCCAGGTGCTGGCCGGTCTGGTGACCCAGTTCCAG 11992 || ||||| |||||||| | | ||| ||| | |||| ||||| || |||| |||| Sbjct 211 GGCGGTGGTCTGGAGGATATTGGCCGCGCGGTATTAACCGGGCTGGTAACGCAGTACCAG 152 Query 11993 GCCACCATGGAA 12004 |||| ||||| Sbjct 151 ACCACGCTGGAA 140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116381715835136