Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_009821.1 Length=164270 Score E Sequences producing significant alignments: (Bits) Value seq2351 183 3e-41 seq3176 114 1e-20 seq3532 98.7 1e-15 >seq2351 Length=10305 Score = 183 bits (202), Expect = 3e-41 Identities = 289/412 (70%), Gaps = 4/412 (1%) Strand=Plus/Minus Query 135792 CATCAGGTTATTAATCTGTACGCCGTAGTCAAGATGGCGAATGCGGTTATCTTCCACCCC 135851 |||||| || || | ||| |||||||| || || || || | |||||| ||||||| || Sbjct 2996 CATCAGCTTGTTCAACTGCACGCCGTAATCGAGGTGACGCACGCGGTTGCCTTCCACGCC 2937 Query 135852 CTTATTGTTCTTTAACACAATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAG 135911 |||||||| | ||| | ||| ||||| | || | |||||||| |||||| | | Sbjct 2936 ACGGTTGTTCTTCAGCACCAGCAGGCTTTCCACTTCCAGATGCCACAGCGGGTAAAACAA 2877 Query 135912 AGTCGCCGCCCCGCCACGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATG 135971 || ||||| ||||| || | |||||| |||||||| || || || || ||||| ||||| Sbjct 2876 CGTTGCCGCTCCGCCGCGCACACCGCCCTGTGAGCAGGATTTCACTGCGGTCTGGAAATG 2817 Query 135972 TTTCCAGAATGGGATAACGCCAGTATGACGAA--CTTCACCATGCCCGATCTTAGATCCT 136029 ||| |||| || ||| ||||||||| ||| |||||||| | ||| || Sbjct 2816 TTTATAGAAAGGAATACAGCCAGTATG--GAATGCTTCACCACCGCGAATCGGGCTACCC 2759 Query 136030 TCCGCGCGAATCATGCCAGCGTTGATACCGATACCAGCACGCTTGCTAATATACTTGATG 136089 ||| ||||| || ||||| || |||||||| ||||||| || || || | | Sbjct 2758 AGCGCACGAATACGACCGGCGTTAATGCCGATACCGGCACGCTGTGAAACGTATTTCACG 2699 Query 136090 ATTGCATTTGCTGTTTCGTTGATGCCCTGCAATGAGTCATCACTTTCAATCACCACACAC 136149 || ||| | | || |||| ||| | || ||| | | ||||||| ||| || Sbjct 2698 ATAGCACTGGAGGTGGCGTTAATGGAATCCAGGCTGTCGCCGCACTCAATCAACACGCAG 2639 Query 136150 GAACTAAATTGGCGTGTTGGGGTACGCACACCTGCCATAATCGGAGTAGGCA 136201 || || || || || |||||||||||||| || | ||| ||||| || |||| Sbjct 2638 GAGCTGAACTGACGGGTTGGGGTACGCACGCCGGACATGATCGGCGTTGGCA 2587 >seq3176 Length=18404 Score = 114 bits (126), Expect = 1e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 53315 AAATTAGAGAGATTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAG 53374 |||||| | || | || || ||||| | |||||||| ||||||| ||| ||||| Sbjct 6312 AAATTACATTGACTGAGTGAAAGTACGGGTAATAACGTCTTGCTGCTGTTCTTTGGTCAG 6371 Query 53375 ACTATTGAAGCGCACCGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGG 53434 ||||||||||| || ||||||||||| || || || | |||||| || || || || Sbjct 6372 CGAGTTGAAGCGCACGGCATAACCAGAAACACGGATGGTCAACTGCGGATATTTTTCCGG 6431 Query 53435 ATGTTCAACAGCGTCCAGCAACATTTCTCGTAACAATACGTTAACATTCAAATGCTGACC 53494 ||||| | || |||| || |||||| || || ||||| || |||| || ||||| Sbjct 6432 GTGTTCCATGGCATCCAACAGCATTTCACGGTTCATCACGTTCACGTTCAGGTGTTGACC 6491 Query 53495 ACCTTCGA 53502 |||||||| Sbjct 6492 ACCTTCGA 6499 >seq3532 Length=11862 Score = 98.7 bits (108), Expect = 1e-15 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 53327 TTCGGTAAAGGTACGCGCGATAACGTCACGCTGCTGGTCTGGAGTCAGACTATTGAAGCG 53386 ||| || || ||||||| || |||||||| ||||| ||||| |||| ||||| || Sbjct 11159 TTCAGTGAAAGTACGCGTAATCACGTCACGTTGCTGTTCTGGGGTCAATGAGTTGAAACG 11218 Query 53387 CACCGCGTAACCAGAAACGCGAATTGTAAGCTGCGGGTACTTCTCAGGATGTTCAACAGC 53446 ||| || ||||||||||| || || || | ||||||||| || || || |||| || || Sbjct 11219 CACTGCATAACCAGAAACACGGATGGTCAACTGCGGGTATTTTTCCGGGTGTTTTACCGC 11278 Query 53447 GTCCAGCAACATTTCTCGTAACAATACGTTAACATTCAAATGCTGACCACCTTCGAC 53503 || || | |||| || || ||||| || |||| || || || ||||| || Sbjct 11279 ATCTTCCAGCGTTTCACGGCGCAGAACGTTCACGTTCAGGTGTTGCCCCCCTTCCAC 11335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 525509933414400