Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq10 156 1e-32 seq676 147 5e-30 seq29 123 6e-23 seq3127 113 1e-19 >seq10 Length=2352850 Score = 156 bits (172), Expect = 1e-32 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || || | ||| |||||||| | ||| |||||||| || || ||||| | Sbjct 820118 TCCTCCTCGAAGACGAAGAACGAGATGGAGGGTGGACTCTTTTTGAATGTTGTAGTCTGA 820059 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || | |||||| || |||||||| || |||||||||| |||||||||| ||| Sbjct 820058 AAGAGTTCTTCCGTCCTCCAATTGTTTACCAGCGAAGATCAAACGCTGTTGATCTGGTGG 819999 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| ||||||||||| || ||||| ||||| || ||||| |||| || | ||| || Sbjct 819998 GATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTGTCAGATGCTTCGAC 819939 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| || ||||| || || || |||| ||||| || || ||||||||| Sbjct 819938 TTCCAGGGTGATGGTTTTGCCAGTCAATGTCTTAACAAAAATCTGCATT 819890 Score = 152 bits (168), Expect = 1e-31 Identities = 177/236 (75%), Gaps = 7/236 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | || || | || | ||| ||| || ||||| || |||| Sbjct 820805 CATG-CCACCTCGAAGACGTAGGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGT 820747 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | ||| || | || ||||| |||||||| || |||||||| ||||| ||||| | Sbjct 820746 CTGAGAGAGTCCTGCCATCTTCCAATTGTTTACCAGCGAAGATGAGACGTTGTTGG---T 820690 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 |||| ||||| |||||||||||||| ||||| || |||||||| || | || | Sbjct 820689 CTGGAGGAATTCCCTCTTTATCCTGGATCTTCGCCTTGACGTTTTCAATTGTGTCAGAGG 820630 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||||||||| ||||| ||||| || |||||||||||||| || ||||||||| Sbjct 820629 CCTCTACTTCGAGTGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAAATCTGCATT 820574 Score = 136 bits (150), Expect = 9e-27 Identities = 170/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || || | ||| || ||||| | ||| ||||| |||||||| || || | Sbjct 820574 TCCTCCTCGAAGACGAAGAACAAGATGGAGAGTGGACTCTTTCTGGATATTGTAATCAGA 820515 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| || | || || || || ||||| || |||||||||| |||||| || ||||| Sbjct 820514 GAGTGTTCTCCCATCCTCCAACTGTTTACCAGCGAAGATCAAACGCTGCTGG---TCTGG 820458 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | || || || ||||||||||| || || || || ||||| || | || | ||| Sbjct 820457 GGGAATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGCTTC 820398 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| || ||||||||||| || || || ||||| ||||||||||||||| Sbjct 820397 GACTTCTAGGGTGATCGTCTTTCCCGTGAGGGTCTTCACGAATATCTGCATT 820346 Score = 129 bits (142), Expect = 1e-24 Identities = 147/196 (75%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| ||||| || ||||||| | || | || ||||| | |||||| || || || Sbjct 821222 TTCTTTCTGGATGTTGTAGTCGGACAAAGTTCTACCATCTTCCAGTTGTTTACCAGCAAA 821163 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| |||||||||| ||||| || || || || ||||||||||| || || || Sbjct 821162 GATCAAACGCTGTTGA---TCTGGAGGAATGCCCTCCTTGTCCTGGATTTTGGCCTTGAC 821106 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||||| || | || | ||||||||||| ||||| ||||| || || || || || Sbjct 821105 GTTTTCAATTGTGTCAGAGGCCTCTACTTCGAGTGTGATGGTCTTGCCAGTTAGGGTTTT 821046 Query 288459 GACGAATATCTGCATT 288474 |||||| ||||||||| Sbjct 821045 GACGAAAATCTGCATT 821030 Score = 120 bits (132), Expect = 7e-22 Identities = 166/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | || || | || | ||| ||| ||||| || || ||||| | Sbjct 819890 TCCACCACGAAGACGTAGGACCAAGTGCAGAGTGGATTCCTTTTGAATGTTGTAGTCTGA 819831 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT-- 288363 ||| || || || ||||| || || || || |||||||||||||| || || ||| Sbjct 819830 GAGGGTTCGGCCATCTTCCAACTGCTTACCAGCGAAGATCAGACGTTGCTG---GTCTGG 819774 Query 288364 -GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 |||||||| ||||| |||||||| || ||||| || ||||| || | || | || Sbjct 819773 AGGGATTCCCTCTTTGTCCTGGATCTTGGCTTTGACATTTTCAATTGTGTCAGAGGCCTC 819714 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| || |||| ||||| ||||| |||||||| Sbjct 819713 GACCTCCAGGGTGATGGTCTTTCCAGTCAACGTCTTCACGAAGATCTGCAT 819663 Score = 111 bits (122), Expect = 4e-19 Identities = 167/235 (71%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | || || || |||| ||| ||||| || |||||||| | Sbjct 819665 CATG-CCACCTCGAAGACGCAGGACAAGGTGAAGGGTGGACTCTTTCTGAATATTATAAT 819607 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || || | || || || | || || || |||||||||||||| || || | Sbjct 819606 CAGAAAGGGTTCTGCCATCCTCGAGCTGCTTACCAGCGAAGATCAGACGTTGCTG---GT 819550 Query 288362 CT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 || |||||||| ||||| |||||||| || ||||| || ||||| || | || | Sbjct 819549 CTGGAGGGATTCCCTCTTTGTCCTGGATCTTGGCTTTGACATTTTCAATTGTGTCAGAGG 819490 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| ||||| || |||| ||||| ||||| |||||||| Sbjct 819489 CCTCGACCTCCAGGGTGATGGTCTTTCCAGTCAACGTCTTCACGAAGATCTGCAT 819435 Score = 104 bits (114), Expect = 6e-17 Identities = 168/239 (70%), Gaps = 7/239 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | || || || |||| ||| ||||| || |||||||| | Sbjct 818981 CATG-CCACCTCGAAGACGCAGGACAAGGTGAAGGGTGGACTCTTTCTGAATATTATAAT 818923 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || || | || || || | || || || |||||||||||||| || || | Sbjct 818922 CAGAAAGGGTTCTGCCATCCTCGAGCTGCTTACCAGCGAAGATCAGACGTTGCTG---GT 818866 Query 288362 CT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 || |||||||| ||||| |||||||| || ||||| || ||||| || | || | Sbjct 818865 CTGGAGGGATTCCCTCTTTGTCCTGGATCTTGGCTTTGACATTTTCAATTGTGTCAGAAG 818806 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || || || | ||| || ||||| || |||| || || ||||| |||||||| ||| Sbjct 818805 CCTCAACCTCCAACGTAATGGTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCATAATG 818747 >seq676 Length=265522 Score = 147 bits (162), Expect = 5e-30 Identities = 172/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || |||| ||| || | |||| || ||| || ||||| || || || | Sbjct 178328 CCTCCACGAAGTCGAAGGACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGAA 178387 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| |||||||| ||||||||||| ||||||||||| | ||| || |||||| Sbjct 178388 AGAGTGCGACCGTCTTCCAATTGTTTTCCAGCGAAGATCAGTCTCTGCTG---GTCTGGG 178444 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || ||||||||||| || || |||||||| || || | ||| | || Sbjct 178445 GGAATTCCCTCCTTATCCTGGATCTTTGCCTTCACGTTCTCGATGGTATCAGAGGCCTCG 178504 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || ||||| ||||| ||||| || ||||| || || ||||||||||||||| Sbjct 178505 ACCTCGAGGGTGATGGTCTTGCCCGTCAGCGTTTTCACGAATATCTGCATT 178555 Score = 116 bits (128), Expect = 9e-21 Identities = 167/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 288243 ATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTC 288302 ||| || || || |||| ||| || | |||| || ||| || || || || || || Sbjct 177412 ATGACCTCCACGAAGTCGAAGGACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAATC 177471 Query 288303 GGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATC 288362 | || |||||||| || || | || ||||| ||||||||||| | ||| || || Sbjct 177472 AGAAAGAGTGCGTCCATCCTCAAGCTGCTTTCCAGCGAAGATCAGTCTCTGCTG---GTC 177528 Query 288363 TGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGA 288419 ||| ||||| || |||||||||||||| || ||||| || || || | ||| | Sbjct 177529 GGGGGGAATTCCCTCCTTATCCTGGATTTTAGCCTTCACATTCTCGATGGTGTCGGAGGC 177588 Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| ||||| || || || ||||||||||| || ||||| Sbjct 177589 CTCGACCTCGAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAGATTTGCAT 177642 Score = 114 bits (126), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || |||| ||| || | |||| || ||| || ||||| || || || | Sbjct 177644 CCTCCACGAAGTCGAAGGACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGAA 177703 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || |||||||| || || | || ||||| ||||||||||| | ||| || |||||| Sbjct 177704 AGAGTGCGTCCATCCTCAAGCTGCTTTCCAGCGAAGATCAGTCTCTGCTG---GTCTGGG 177760 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || ||||||||||| || ||||| || || || | ||| | || Sbjct 177761 GGAATTCCCTCCTTGTCCTGGATTTTAGCCTTCACATTCTCGATGGTGTCGGAGGCCTCG 177820 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || ||||| || || || |||||||||||||| ||||| Sbjct 177821 ACCTCAAGGGTTATGGTCTTTCCTGTGAGGGTCTTGACGAATATTTGCAT 177870 Score = 114 bits (126), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || |||| ||| || | |||| || ||| || ||||| || || || | Sbjct 178100 CCTCCACGAAGTCGAAGGACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGAA 178159 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || |||||||| || || | || ||||| ||||||||||| | ||| || |||||| Sbjct 178160 AGAGTGCGTCCATCCTCAAGCTGCTTTCCAGCGAAGATCAGTCTCTGCTG---GTCTGGG 178216 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || ||||||||||| || ||||| || || || | ||| | || Sbjct 178217 GGAATTCCCTCCTTGTCCTGGATTTTAGCCTTCACATTCTCAATGGTGTCGGAGGCCTCG 178276 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || ||||| || || || ||||||||||| |||||||| Sbjct 178277 ACCTCAAGGGTTATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 178326 Score = 109 bits (120), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || |||| ||| || | |||| || ||| || || || || || || | Sbjct 177872 CCTCCACGAAGTCGAAGGACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAATCAGAA 177931 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || |||||||| || || | || ||||| |||||||||| | ||| || |||||| Sbjct 177932 AGAGTGCGTCCATCCTCAAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGG---TCTGGG 177988 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || ||||||||||| || || ||||| || || || | ||| | || Sbjct 177989 GGAATTCCCTCCTTATCCTGGATCTTAGCCTTCACATTCTCGATGGTGTCGGAGGCCTCG 178048 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| || || || ||||||||||| || ||||| Sbjct 178049 ACCTCGAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAGATTTGCAT 178098 >seq29 Length=2726036 Score = 123 bits (136), Expect = 6e-23 Identities = 145/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||| | ||| || || || || |||||||||||||| ||||||||| Sbjct 1034236 TTCTGGATGTTGTAGTCAGAGAGAGTACGGCCATCCTCTAATTGTTTTCCAGCGAAGATC 1034177 Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 | | ||| || ||||| || || || |||||||| || || ||||| || ||| Sbjct 1034176 AACCTCTGCTGG---TCTGGAGGAATGCCCTCCTTATCCTGAATCTTGGCTTTGACATTT 1034120 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | || || || || ||||| |||||||| |||| ||||||||| Sbjct 1034119 TCGATCGTATCAGAAGCCTCAACCTCAAGGGTGATGGTCTTCCCCGTCAATGTCTTGACG 1034060 Query 288463 AATATCTGCATTATG 288477 || ||||||||| || Sbjct 1034059 AAAATCTGCATTGTG 1034045 >seq3127 Length=15394 Score = 113 bits (124), Expect = 1e-19 Identities = 263/393 (67%), Gaps = 8/393 (2%) Strand=Plus/Minus Query 72429 TCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATCCT 72488 || ||| | ||||| ||| |||||||||||||| | || | ||||||||||| ||| Sbjct 1892 TCTGAGCTATATGGCTTAGTACAAGAAATTCCTCAAAGAGAGACAACTCCGTTTTACCCT 1833 Query 72489 CGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGAT--CTGTAAAAATTACCGTG 72546 || || |||| || |||||||| || || |||||||| |||| ||| || |||| Sbjct 1832 AGATCTCCATACGCGGTCGCAAAGTTATATGCATATTGGATTACTGT--AAACTATCGTG 1775 Query 72547 AGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGTCCCAACAGAG 72606 |||| ||| || |||| || ||| || ||||||||| || ||| | | Sbjct 1774 AGTCATATGGAATCTATGCTTGTAACGGTATACTTTTCAATCATGAATCTCCACGTCGTG 1715 Query 72607 GCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTTCAATGGTGTCG 72666 | | || || || || ||||| || | | || ||||||| | | || | | Sbjct 1714 GTGAAACTTTTGTAACACGAAAAATTACTCGCGCAATTGCTAATATTTCCCAAGGAATTG 1655 Query 72667 AAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATT 72726 || | ||| | ||| | |||||||| || | | | |||||||| | || || |||| Sbjct 1654 AACAGTGCCTTTATTTAGGTAATATGGACTCTTTACGTGATTGGGGCCACGCAAAAGATT 1595 Query 72727 ACGT--AGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGC 72784 | || | |||| ||| ||||||| ||||||||| || || || | ||| ||||| Sbjct 1594 ATGTTCGCATGCAA--TGGATGATGCTCCAACAAGATCAGCCTGAAGATTTTGTCATTGC 1537 Query 72785 AACAGGGAAAACAACGAGCGTTCGTGAGTTCGT 72817 || || ||| || |||||||| || || Sbjct 1536 TACTGGCAAACAAATTTCTGTTCGTGAATTTGT 1504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179594426370304