Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq14 125 8e-24 seq676 116 4e-21 seq328 96.9 4e-15 seq38 96.9 4e-15 seq88 89.7 6e-13 seq10 89.7 6e-13 seq98 86.0 7e-12 >seq14 Length=2234412 Score = 125 bits (138), Expect = 8e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| || | ||| ||||| ||||| |||||||||| ||| || || | || || Sbjct 1933606 ACCAAGTGAAGTGTCGATTCCTTCTGAATGTTGTAATCAGACAGGGTGCGTCCATCCTCG 1933547 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 ||||| ||||||||||| || || | ||||||||| | || | || |||||||||| || Sbjct 1933546 AGCTGTTTACCAGCGAAAATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCC-TG 1933488 Query 42120 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 | |||| | ||||| || | | ||||| | ||||| |||| |||||||| || Sbjct 1933487 AATTTTGGCTTTGACATTCTCGATTGTGTCAGAAGCCTCCACCTCGAGGGTGATGGTCTT 1933428 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || ||||| || ||||| ||||| ||||| || Sbjct 1933427 CCCAGTTAGGGTTTTTACGAAGATCTGCATGTT 1933395 >seq676 Length=265522 Score = 116 bits (128), Expect = 4e-21 Identities = 168/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 41972 AATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATT 42031 |||||| ||||||| | | || | ||||| || | || ||||| ||||| || Sbjct 177406 AATTTAATGACCTCCACGAAGTCGAAGGACCAAGTGAAGGGTAGATTCCTTCTGAATGTT 177465 Query 42032 GTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTG 42091 |||||||| ||||| || | || || |||||||| |||||||| || |||| |||||| Sbjct 177466 GTAATCAGAAAGAGTGCGTCCATCCTCAAGCTGCTTTCCAGCGAAGATCAGTCTCTGCTG 177525 Query 42092 GTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCT 42151 ||||| || | | |||||| ||| |||||| || | || | | |||||| Sbjct 177526 GTCGGGGGGAATTCCCTCCTTATCCTGGATTTTAGCCTTCACATTCTCGATGGTGTCGGA 177585 Query 42152 CGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || |||| |||||||| || || || || ||||| || ||||||||||| Sbjct 177586 GGCCTCGACCTCGAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAGATTTGCAT 177642 Score = 102 bits (112), Expect = 9e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| ||||| |||||||||| ||||| || | || || |||||||| |||||||| Sbjct 177908 TCCTTCTGAATGTTGTAATCAGAAAGAGTGCGTCCATCCTCAAGCTGCTTTCCAGCGAAG 177967 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || | || ||||||||| | || | | |||||| ||| ||| || || | || Sbjct 177968 ATCAATCTCTGCTGGTCTGGGGGAATTCCCTCCTTATCCTGGATCTTAGCCTTCACATTC 178027 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | |||||| | || || |||| |||||||| || || || || ||||| || Sbjct 178028 TCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACG 178087 Query 42198 AAGATTTGCAT 42208 ||||||||||| Sbjct 178088 AAGATTTGCAT 178098 >seq328 Length=524925 Score = 96.9 bits (106), Expect = 4e-15 Identities = 68/77 (88%), Gaps = 2/77 (3%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | ||||| |||| | |||||||||||||||||||||||||||||||| |||| Sbjct 365355 AAAAAATCTCTCC--GGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATAC 365412 Query 57058 TCACCACTATACTACCG 57074 | ||||||||||||||| Sbjct 365413 TAACCACTATACTACCG 365429 >seq38 Length=2624962 Score = 96.9 bits (106), Expect = 4e-15 Identities = 68/77 (88%), Gaps = 2/77 (3%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | ||||| |||| | |||||||||||||||||||||||||||||||| |||| Sbjct 2571075 AAAAAATCTCTCC--GGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATAC 2571132 Query 57058 TCACCACTATACTACCG 57074 | ||||||||||||||| Sbjct 2571133 TGACCACTATACTACCG 2571149 >seq88 Length=1565181 Score = 89.7 bits (98), Expect = 6e-13 Identities = 68/78 (87%), Gaps = 3/78 (4%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | ||||| |||| | |||||||||||||||||||||||||||||||| |||| Sbjct 187957 AAAAAATCTCTCC--GGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATAC 188014 Query 57058 TCA-CCACTATACTACCG 57074 | | |||||||||||||| Sbjct 188015 TAATCCACTATACTACCG 188032 >seq10 Length=2352850 Score = 89.7 bits (98), Expect = 6e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| |||| ||| ||||||||||| ||||| || | || || || | || || Sbjct 819871 ACCAAGTGCAGAGTGGATTCCTTTTGAATGTTGTAGTCTGAGAGGGTTCGGCCATCTTCC 819812 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 | ||||||||||||||| || || || |||||||| | || | | ||| |||||| | Sbjct 819811 AACTGCTTACCAGCGAAGATCAGACGTTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGG 819752 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 || || ||||| | | | ||||| | || || || | |||||||| || Sbjct 819751 ATCTTGGCTTTGACATTTTCAATTGTGTCAGAGGCCTCGACCTCCAGGGTGATGGTCTTT 819692 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | |||||| || ||||| ||||| Sbjct 819691 CCAGTCAACGTCTTCACGAAGATCTGCAT 819663 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | ||||| ||||| || | ||| || || || || ||||| || | | Sbjct 820345 CCTCCTCTCAGACGCAGGACCAAGTGGAGTGTTGATTCTTTCTGGATGTTGTAGTCTGAC 820286 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| | | || || || || ||||||||||| || | ||||||||||| | || Sbjct 820285 AGAGTTCTGCCATCTTCCAGTTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGA 820226 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || |||||||||| ||| || |||| || | | |||||| | ||||| Sbjct 820225 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATCGTGTCAGATGCCTCCACT 820166 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || | ||||| || || || || | || || || || || |||||| Sbjct 820165 TCAAGTGTGATAGTCTTACCAGTCAAAGTTTTCACGAAAATCTGCATT 820118 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||||| | ||| | || | ||| | ||| ||| || || ||||||||||||| Sbjct 820573 CCTCCTCGAAGACGAAGAACAAGATGGAGAGTGGACTCTTTCTGGATATTGTAATCAGAG 820514 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || | | | || || | ||| ||||||||||| || | ||||||||||| | || Sbjct 820513 AGTGTTCTCCCATCCTCCAACTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGA 820454 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || |||||| ||| ||| || |||| | | | ||||| | ||| || Sbjct 820453 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGCTTCGACT 820394 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || | ||||| || || ||||| || ||||| || || || |||||| Sbjct 820393 TCTAGGGTGATCGTCTTTCCCGTGAGGGTCTTCACGAATATCTGCATT 820346 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || |||||||| ||||||| || || | | || || ||||||||||||||||| Sbjct 819626 CTCTTTCTGAATATTATAATCAGAAAGGGTTCTGCCATCCTCGAGCTGCTTACCAGCGAA 819567 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || || |||||||| | || | | ||| |||||| ||| || ||||| | Sbjct 819566 GATCAGACGTTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATCTTGGCTTTGACATT 819507 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||||| | || || || | |||||||| || || || | |||||| || Sbjct 819506 TTCAATTGTGTCAGAGGCCTCGACCTCCAGGGTGATGGTCTTTCCAGTCAACGTCTTCAC 819447 Query 42197 AAAGATTTGCAT 42208 ||||| ||||| Sbjct 819446 GAAGATCTGCAT 819435 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||||| | ||| | || | ||| | ||| ||| || || ||||||||||||| Sbjct 821029 CCTCCTCGAAGACGAAGAACAAGATGGAGAGTGGACTCTTTCTGGATATTGTAATCAGAG 820970 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || | | | || || | || ||||||||||| || | ||||||||||| | || Sbjct 820969 AGTGTTCTCCCATCCTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGA 820910 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | ||| |||||| ||| || ||||| | | | ||||| | || || Sbjct 820909 ATTCCCTCTTTGTCCTGGATCTTGGCTTTGACATTTTCAATAGTGTCAGAGGCCTCTACT 820850 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| || || || | |||||||||||||| ||||| Sbjct 820849 TCCAGTGTGATGGTCTTCCCAGTCAATGTCTTTACAAAGATCTGCAT 820803 >seq98 Length=1573618 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/78 (86%), Gaps = 3/78 (4%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | ||||| |||| | | |||||||||||||||||||||||||||||| |||| Sbjct 118094 AAAAAATCTCTCC--GGCAGGGATTCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATAC 118037 Query 57058 TCACC-ACTATACTACCG 57074 | ||| |||||||||||| Sbjct 118036 TGACCAACTATACTACCG 118019 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/78 (86%), Gaps = 3/78 (4%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | ||||| |||| | | |||||||||||||||||||||||||||||| |||| Sbjct 118501 AAAAAATCTCTCC--GGCAGGGATTCGAACCCTGGTCTCCCGCGTGACAGGCGGGGATAC 118444 Query 57058 TCACC-ACTATACTACCG 57074 | ||| |||||||||||| Sbjct 118443 TGACCAACTATACTACCG 118426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543185856645120