Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq14 132 5e-26 seq10 116 4e-21 seq676 114 1e-20 >seq14 Length=2234412 Score = 132 bits (146), Expect = 5e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || ||||| || || | |||| |||||||| || |||||||||||||| | Sbjct 1933625 ACCACCACGTAATCTGAGTACCAAGTGAAGTGTCGATTCCTTCTGAATGTTGTAATCAGA 1933566 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | || || ||||| || || || |||| |||| ||||||||| || || Sbjct 1933565 CAGGGTGCGTCCATCCTCGAGCTGTTTACCAGCGAAAATCAGCCTCTGCTGGTCTGGGGG 1933506 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 ||| || || || || || ||||| ||||| ||| ||| | ||| ||| || |||| Sbjct 1933505 AATGCCCTCCTTGTCCTGAATTTTG-GCTTTGACATTCTCGATTGTGTCAGAAGCCTCCA 1933447 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 | || | || | |||||| || || | ||||||||||| || ||||| || Sbjct 1933446 CCTCGAGGGTGATGGTCTTCCCAGTTAGGGTTTTTACGAAGATCTGCATGTT 1933395 >seq10 Length=2352850 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| |||||||||||||| |||| || ||| || | ||||| | |||||| || Sbjct 819859 GTGGATTCCTTTTGAATGTTGTAGTCTGAGAGGGTTCGGCCATCTTCCAACTGCTTACCA 819800 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || || || |||||||| ||||| ||||| ||||| || || | | || ||||| Sbjct 819799 GCGAAGATCAGACGTTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGA-TCTTGGCTTT 819741 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | ||| ||| ||| || || || | || | |||||| || ||||| || Sbjct 819740 GACATTTTCAATTGTGTCAGAGGCCTCGACCTCCAGGGTGATGGTCTTTCCAGTCAACGT 819681 Query 64426 TTTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 819680 CTTCACGAAGATCTGCAT 819663 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || |||||||| |||| || || | | ||||| | || || || Sbjct 820771 GTGGATTCCTTCTGGATGTTGTAGTCTGAGAGAGTCCTGCCATCTTCCAATTGTTTACCA 820712 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | ||||| || || ||||| ||||||||||| ||||| || || || || ||| Sbjct 820711 GCGAAGATGAGACGTTGTTGGTCTGGAGGAATTCCCTCTTTATCCTGGATCTTCGCCTTG 820652 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | ||| ||| ||| || ||||| | || | ||||||||| |||| ||| Sbjct 820651 ACGTTTTCAATTGTGTCAGAGGCCTCTACTTCGAGTGTGATGGTCTTGCCAGTCAGAGTC 820592 Query 64427 TTTACGAAAATTTGCATT 64444 || || ||||| |||||| Sbjct 820591 TTGACAAAAATCTGCATT 820574 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || |||||||| || |||||||| |||| | || | | ||||| || || || || Sbjct 820315 GTTGATTCTTTCTGGATGTTGTAGTCTGACAGAGTTCTGCCATCTTCCAGTTGTTTACCA 820256 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | ||||||||||| || ||||| || || || || || || || ||| Sbjct 820255 GCGAAGATCAAACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 820196 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || ||| || |||||||| | || | ||||| || ||||||||| Sbjct 820195 ACGTTCTCAATCGTGTCAGATGCCTCCACTTCAAGTGTGATAGTCTTACCAGTCAAAGTT 820136 Query 64427 TTTACGAAAATTTGCATT 64444 || |||||||| |||||| Sbjct 820135 TTCACGAAAATCTGCATT 820118 Score = 93.3 bits (102), Expect = 4e-14 Identities = 151/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | || || ||||||||||||||||| |||| | || | |||| Sbjct 820103 AAGAACGAGATGGAGGGTGGACTCTTTTTGAATGTTGTAGTCTGAAAGAGTTCTTCCGTC 820044 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || | || || || || | || | ||||| || || || || || |||||||| || Sbjct 820043 CTCCAATTGTTTACCAGCGAAGATCAAACGCTGTTGATCTGGTGGGATACCTTCTTTATC 819984 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 ||| | |||| ||||| ||| || | || ||| || || ||||| | || | || Sbjct 819983 TTG-AATTTTAGCTTTAACATTTTCAATAGTGTCAGATGCTTCGACTTCCAGGGTGATGG 819925 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 | ||||| ||||| || || || ||||| |||||| Sbjct 819924 TTTTGCCAGTCAATGTCTTAACAAAAATCTGCATT 819890 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | || || ||||| || || |||||||| | || || | | | || Sbjct 821015 AAGAACAAGATGGAGAGTGGACTCTTTCTGGATATTGTAATCAGAGAGTGTTCTCCCATC 820956 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || | || || || || | || | ||||||||||| || |||||||| ||||| || Sbjct 820955 CTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCTTTGTC 820896 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 || | | || ||||| ||| || | || ||| ||| || ||||| | || | || Sbjct 820895 CTGGA-TCTTGGCTTTGACATTTTCAATAGTGTCAGAGGCCTCTACTTCCAGTGTGATGG 820837 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| || ||||| || ||||| || || ||||| Sbjct 820836 TCTTCCCAGTCAATGTCTTTACAAAGATCTGCAT 820803 >seq676 Length=265522 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || ||| || | |||| || ||||| || |||||||||||||| | Sbjct 177415 ACCTCCACGAAGTCGAAGGACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAATCAGA 177474 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || ||||||||||| || || | || || | |||||||||||| || Sbjct 177475 AAGAGTGCGTCCATCCTCAAGCTGCTTTCCAGCGAAGATCAGTCTCTGCTGGTCGGGGGG 177534 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||| || || || || ||||| ||| ||| ||| | || || ||| || || Sbjct 177535 AATTCCCTCCTTATCCTGGATTTTAGCCTTCACATTCTCGATGGTGTCGGAGGCCTCGAC 177594 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||| || || | || || ||||| |||||||| Sbjct 177595 CTCGAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAGATTTGCAT 177642 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || ||| || | |||| || ||||| || || ||||||||||| | Sbjct 178327 ACCTCCACGAAGTCGAAGGACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGA 178386 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| ||||||| | || || || || | || || | ||||||||| || || Sbjct 178387 AAGAGTGCGACCGTCTTCCAATTGTTTTCCAGCGAAGATCAGTCTCTGCTGGTCTGGGGG 178446 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||| || || || || || ||| ||| || ||| | |||||| ||| || || Sbjct 178447 AATTCCCTCCTTATCCTGGATCTTTGCCTTCACGTTCTCGATGGTATCAGAGGCCTCGAC 178506 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | ||||||||| |||| ||||| ||||| || |||||||| Sbjct 178507 CTCGAGGGTGATGGTCTTGCCCGTCAGCGTTTTCACGAATATCTGCATTTT 178557 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || ||| || | |||| || ||||| || || ||||||||||| | Sbjct 177643 ACCTCCACGAAGTCGAAGGACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGA 177702 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || ||||||||||| || || | || || | ||||||||| || || Sbjct 177703 AAGAGTGCGTCCATCCTCAAGCTGCTTTCCAGCGAAGATCAGTCTCTGCTGGTCTGGGGG 177762 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||| || || || || ||||| ||| ||| ||| | || || ||| || || Sbjct 177763 AATTCCCTCCTTGTCCTGGATTTTAGCCTTCACATTCTCGATGGTGTCGGAGGCCTCGAC 177822 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | |||| |||||| || || | || || ||||| |||||||| Sbjct 177823 CTCAAGGGTTATGGTCTTTCCTGTGAGGGTCTTGACGAATATTTGCAT 177870 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || ||| || | |||| || ||||| || || ||||||||||| | Sbjct 178099 ACCTCCACGAAGTCGAAGGACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGA 178158 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || ||||||||||| || || | || || | ||||||||| || || Sbjct 178159 AAGAGTGCGTCCATCCTCAAGCTGCTTTCCAGCGAAGATCAGTCTCTGCTGGTCTGGGGG 178218 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||| || || || || ||||| ||| ||| ||| | || || ||| || || Sbjct 178219 AATTCCCTCCTTGTCCTGGATTTTAGCCTTCACATTCTCAATGGTGTCGGAGGCCTCGAC 178278 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | |||| |||||| || || | || || ||||| || ||||| Sbjct 178279 CTCAAGGGTTATGGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 178326 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || ||| || | |||| || ||||| || |||||||||||||| | Sbjct 177871 ACCTCCACGAAGTCGAAGGACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAATCAGA 177930 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || ||||||||||| || || | || | | ||||||||| || || Sbjct 177931 AAGAGTGCGTCCATCCTCAAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGGTCTGGGGG 177990 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||| || || || || || || ||| ||| ||| | || || ||| || || Sbjct 177991 AATTCCCTCCTTATCCTGGATCTTAGCCTTCACATTCTCGATGGTGTCGGAGGCCTCGAC 178050 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||| || || | || || ||||| |||||||| Sbjct 178051 CTCGAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAGATTTGCAT 178098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499620017617920