Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_010342.1 Length=39245 Score E Sequences producing significant alignments: (Bits) Value seq2969 241 3e-59 seq2694 235 1e-57 seq2874 147 5e-31 >seq2969 Length=1929 Score = 241 bits (266), Expect = 3e-59 Identities = 377/536 (70%), Gaps = 5/536 (1%) Strand=Plus/Plus Query 21297 TGGATGGGCGGCAAGCGCCGCCTGGCTAAACATATCCTGCCGAACTTCCCTGACCACCAG 21356 ||||| ||||| || || || ||||| ||||| || | ||| ||||||| | || Sbjct 200 TGGATAGGCGGTAAACGGCGGCTGGCAAAACAGATTTTACCGCACTTCCCGGCGCATATC 259 Query 21357 TGCTACGTTGAGCCCTTCGCGGGCGGCGCGGCGCTGTTCTTCATGAAGCAACCCAGCAAA 21416 |||||||| || || || |||| |||||||| ||||| |||||| ||||||||| Sbjct 260 TGCTACGTGGAACCGTTTTGTGGCGCGGCGGCGCTCTTCTTTATGAAGTCACCCAGCAAG 319 Query 21417 GTGGAGGTGATCAACGACACCAACAGCGACCTGGTCAACTTGTACCGGGTGGTGCAGCAC 21476 | ||| ||||| ||||| | |||| |||| |||||||| | || |||||| || | ||| Sbjct 320 GCGGAAGTGATTAACGATATCAACGGCGAACTGGTCAATCTCTATCGGGTGCTGAAACAC 379 Query 21477 CACCTGGAGGAGTTCGTGCGCCAGTTCAAGTGGGCGCTGGTCTCGCGTGAGATGTTCGCG 21536 || ||||| || || | |||||||| || |||||||||||| | | ||||| Sbjct 380 CATCTGGAAGAATTTATACGCCAGTTTAAATGGGCGCTGGTCAGCAGGGCGATGTATCAA 439 Query 21537 TGGGAGAAGCTCAAGCACACCGACACGCTAACGGATATCCAGCGGGCCGCGCGGTTCTAC 21596 ||| ||| ||| | ||||| || |||| ||||||||||| || || || ||||| Sbjct 440 TGGTTGAAAATCACCCCGACCGAGACCTTAACCGATATCCAGCGCGCGGCCCGTTTCTAT 499 Query 21597 TACCTGCAGCAGCAGGGGTTTGGCGGGAAGGT---CAACTCGAACTTTGGCATCTCGACC 21653 |||||||| | |||| ||| ||||| ||||| | | | ||||||| | | ||| Sbjct 500 TACCTGCAAAAACAGGCGTTCGGCGGCAAGGTGGCCGAGCACACCTTTGGCGTGACCACC 559 Query 21654 ACGTCTGGCCCTGGGCTTAACCTGCTGCGGATCGAGGAGAACCTCAGCCAGGCGCACTTG 21713 || ||| || | || |||||| |||| || || || | || ||| || || Sbjct 560 ACCACTGCGCCACGCCTGAACCTGTTGCGCATGGAAGAAGAACTGTCGTTGGCTCATCTG 619 Query 21714 CGGCTCTCGCGCGTGTTCGTTGAGAACATGGACT-GGAAAGCGGTCATGAAGCGCTACGA 21772 || || || ||| | | |||| | | |||| || |||| | ||| ||||| || Sbjct 620 CGACTATCACGCACCTCCATTGAACAACTTGACTGGGCAAGCTG-CATTGCCCGCTATGA 678 Query 21773 CCGGCCGCACACGTTGCACTATCTCGACCCGCCGTATTGGGCGACCGCTGGCTATG 21828 ||| ||||||||| || ||| ||||||||||||||||| ||| | || |||| Sbjct 679 CCGTCCGCACACGCTGTTCTACTGCGACCCGCCGTATTGGGGGACGGAAGGTTATG 734 >seq2694 Length=15341 Score = 235 bits (260), Expect = 1e-57 Identities = 377/537 (70%), Gaps = 7/537 (1%) Strand=Plus/Minus Query 21297 TGGATGGGCGGCAAGCGCCGCCTGGCTAAACATATCCTGCCGAACTTCCCTGACCACCAG 21356 ||||| ||||| || || || ||||| ||||| || | ||| ||||||| || Sbjct 2676 TGGATAGGCGGTAAACGGCGGCTGGCAAAACAGATTTTACCGCGCTTCCCTACGCATACC 2617 Query 21357 TGCTACGTTGAGCCCTTCGCGGGCGGCGCGGCGCTGTTCTTCATGAAGCAACCCAGCAAA 21416 |||||||| ||||| || |||| |||||||| || || |||||| ||| |||||| Sbjct 2616 TGCTACGTGGAGCCATTTTGTGGCGCGGCGGCGCTCTTTTTTATGAAGTCACCGAGCAAA 2557 Query 21417 GTGGAGGTGATCAACGACACCAACAGCGACCTGGTCAACTTGTACCGGGTGGTGCAGCAC 21476 | ||||||||| ||||| | |||| |||| |||||||| | || |||||| || | ||| Sbjct 2556 GCGGAGGTGATTAACGATATCAACGGCGAGCTGGTCAATCTTTATCGGGTGTTGAAACAC 2497 Query 21477 CACCTGGAGGAGTTCGTGCGCCAGTTCAAGTGGGCGCTGGTCTCGCGTGAGATGTTCGCG 21536 || ||||| ||||| |||||||||| || |||||||||||| || | ||||| Sbjct 2496 CATCTGGAAGAGTTTATGCGCCAGTTTAAATGGGCGCTGGTCAGCCGGGCGATGTATCAA 2437 Query 21537 TGGGAGAAGCTCAAGCACACCGACACGCTAACGGATATCCAGCGGGCCGCGCGGTTCTAC 21596 ||| || ||| || ||||| || ||||| ||||||||||| || || || ||||| Sbjct 2436 TGGTTAAACATCACGCCGACCGAGACCCTAACCGATATCCAGCGCGCAGCACGTTTCTAT 2377 Query 21597 TACCTGCAGCAGCAGGGGTTTGGCGGGAAGGT----CAACTCGAACTTTGGCATCTCGAC 21652 |||||||| | |||| ||| ||||| ||||| | | | | ||||||| | | || Sbjct 2376 TACCTGCAAAAACAGGCGTTCGGCGGCAAGGTGGCGGAGCAC-ACCTTTGGCGTGACCAC 2318 Query 21653 CACGTCTGGCCCTGGGCTTAACCTGCTGCGGATCGAGGAGAACCTCAGCCAGGCGCACTT 21712 || | || || | || ||||||||||| || || || | | | ||||| | Sbjct 2317 TACAACGGGGCCGCGCCTGAACCTGCTGCGCATGGAAGAAGAGTTATCGCTCGCGCATCT 2258 Query 21713 GCGGCTCTCGCGCGTGTTCGTTGAGAACATGGACT-GGAAAGCGGTCATGAAGCGCTACG 21771 ||| | || ||| | |||| || |||| | || ||| || || || || | Sbjct 2257 GCGATTATCACGCACCACCATTGAACACCTGGATTGGGCCAGCTGT-ATTGCCCGTTATG 2199 Query 21772 ACCGGCCGCACACGTTGCACTATCTCGACCCGCCGTATTGGGCGACCGCTGGCTATG 21828 |||| ||||||||| || || |||||| ||||| |||| |||| ||||||| Sbjct 2198 ACCGTCCGCACACGCTGTTTTACTGCGACCCACCGTACTGGGGAACCGAGGGCTATG 2142 >seq2874 Length=8148 Score = 147 bits (162), Expect = 5e-31 Identities = 225/316 (71%), Gaps = 6/316 (2%) Strand=Plus/Plus Query 21297 TGGATGGGCGGCAAGCGCCGCCTGGCTAAACATATCCTGCCGAACTTCCCTGACCACCAG 21356 ||| |||| || ||||| || |||||||||| ||| || || ||| ||||| ||| | Sbjct 2438 TGGGTGGGAGGGAAGCGTCGGCTGGCTAAACGTATTCTATCGTGCTTTCCTGAGCACAAA 2497 Query 21357 TGCTACGTTGAGCCCTTCGCGGGCGGCGCGGCGCTGTTCTTCATGAAGCAACCCAGCAAA 21416 ||||||||||| || ||| || || || |||||||| |||| ||| |||| | | Sbjct 2498 TGCTACGTTGAACCATTCTGTGGGGGAGCTGCGCTGTTTTTCAGCAAGGAACCATCTACA 2557 Query 21417 GTGGAGGTGATCAACGACACCAACAGCGACCTGGTCAACTTGTACCGGGTGGTGCAGCAC 21476 | || ||| | ||||| | ||| |||| || | ||| | || | |||||| | ||| Sbjct 2558 GCCGAAGTGCTGAACGATATCAATGGCGATTTGATAAACCTCTATCAGGTGGTTAAACAC 2617 Query 21477 CACCTGGAGGAGTTCGTGCGCCAGTTCAAGTGGGCGCTGGTCTCGCGTGAGATGTTCGCG 21536 || ||||||| || || || || ||||||||||| || | | || |||| | Sbjct 2618 CATTTGGAGGAATTTGTACGTCAATTCAAGTGGGCCTTGAGCAGTAGGCAGCTGTTTGAT 2677 Query 21537 TGG-GAGAAGCTCAAGCA-CACCG-ACACGCTAACGGATATCCAGCGGGCCGCGCGGTTC 21593 ||| | ||| || || | ||| | | |||||| ||||||||||| ||||| ||||| Sbjct 2678 TGGCTAAAAG---AAACACCTCCGCAAATGCTAACTGATATCCAGCGAGCCGCCCGGTTT 2734 Query 21594 TACTACCTGCAGCAGC 21609 ||||| || ||||||| Sbjct 2735 TACTATCTTCAGCAGC 2750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 125456488211712