Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27]
3,968 sequences; 388,752,668 total letters
Query= NC_010342.1
Length=39245
Score E
Sequences producing significant alignments: (Bits) Value
seq2969 241 3e-59
seq2694 235 1e-57
seq2874 147 5e-31
>seq2969
Length=1929
Score = 241 bits (266), Expect = 3e-59
Identities = 377/536 (70%), Gaps = 5/536 (1%)
Strand=Plus/Plus
Query 21297 TGGATGGGCGGCAAGCGCCGCCTGGCTAAACATATCCTGCCGAACTTCCCTGACCACCAG 21356
||||| ||||| || || || ||||| ||||| || | ||| ||||||| | ||
Sbjct 200 TGGATAGGCGGTAAACGGCGGCTGGCAAAACAGATTTTACCGCACTTCCCGGCGCATATC 259
Query 21357 TGCTACGTTGAGCCCTTCGCGGGCGGCGCGGCGCTGTTCTTCATGAAGCAACCCAGCAAA 21416
|||||||| || || || |||| |||||||| ||||| |||||| |||||||||
Sbjct 260 TGCTACGTGGAACCGTTTTGTGGCGCGGCGGCGCTCTTCTTTATGAAGTCACCCAGCAAG 319
Query 21417 GTGGAGGTGATCAACGACACCAACAGCGACCTGGTCAACTTGTACCGGGTGGTGCAGCAC 21476
| ||| ||||| ||||| | |||| |||| |||||||| | || |||||| || | |||
Sbjct 320 GCGGAAGTGATTAACGATATCAACGGCGAACTGGTCAATCTCTATCGGGTGCTGAAACAC 379
Query 21477 CACCTGGAGGAGTTCGTGCGCCAGTTCAAGTGGGCGCTGGTCTCGCGTGAGATGTTCGCG 21536
|| ||||| || || | |||||||| || |||||||||||| | | |||||
Sbjct 380 CATCTGGAAGAATTTATACGCCAGTTTAAATGGGCGCTGGTCAGCAGGGCGATGTATCAA 439
Query 21537 TGGGAGAAGCTCAAGCACACCGACACGCTAACGGATATCCAGCGGGCCGCGCGGTTCTAC 21596
||| ||| ||| | ||||| || |||| ||||||||||| || || || |||||
Sbjct 440 TGGTTGAAAATCACCCCGACCGAGACCTTAACCGATATCCAGCGCGCGGCCCGTTTCTAT 499
Query 21597 TACCTGCAGCAGCAGGGGTTTGGCGGGAAGGT---CAACTCGAACTTTGGCATCTCGACC 21653
|||||||| | |||| ||| ||||| ||||| | | | ||||||| | | |||
Sbjct 500 TACCTGCAAAAACAGGCGTTCGGCGGCAAGGTGGCCGAGCACACCTTTGGCGTGACCACC 559
Query 21654 ACGTCTGGCCCTGGGCTTAACCTGCTGCGGATCGAGGAGAACCTCAGCCAGGCGCACTTG 21713
|| ||| || | || |||||| |||| || || || | || ||| || ||
Sbjct 560 ACCACTGCGCCACGCCTGAACCTGTTGCGCATGGAAGAAGAACTGTCGTTGGCTCATCTG 619
Query 21714 CGGCTCTCGCGCGTGTTCGTTGAGAACATGGACT-GGAAAGCGGTCATGAAGCGCTACGA 21772
|| || || ||| | | |||| | | |||| || |||| | ||| ||||| ||
Sbjct 620 CGACTATCACGCACCTCCATTGAACAACTTGACTGGGCAAGCTG-CATTGCCCGCTATGA 678
Query 21773 CCGGCCGCACACGTTGCACTATCTCGACCCGCCGTATTGGGCGACCGCTGGCTATG 21828
||| ||||||||| || ||| ||||||||||||||||| ||| | || ||||
Sbjct 679 CCGTCCGCACACGCTGTTCTACTGCGACCCGCCGTATTGGGGGACGGAAGGTTATG 734
>seq2694
Length=15341
Score = 235 bits (260), Expect = 1e-57
Identities = 377/537 (70%), Gaps = 7/537 (1%)
Strand=Plus/Minus
Query 21297 TGGATGGGCGGCAAGCGCCGCCTGGCTAAACATATCCTGCCGAACTTCCCTGACCACCAG 21356
||||| ||||| || || || ||||| ||||| || | ||| ||||||| ||
Sbjct 2676 TGGATAGGCGGTAAACGGCGGCTGGCAAAACAGATTTTACCGCGCTTCCCTACGCATACC 2617
Query 21357 TGCTACGTTGAGCCCTTCGCGGGCGGCGCGGCGCTGTTCTTCATGAAGCAACCCAGCAAA 21416
|||||||| ||||| || |||| |||||||| || || |||||| ||| ||||||
Sbjct 2616 TGCTACGTGGAGCCATTTTGTGGCGCGGCGGCGCTCTTTTTTATGAAGTCACCGAGCAAA 2557
Query 21417 GTGGAGGTGATCAACGACACCAACAGCGACCTGGTCAACTTGTACCGGGTGGTGCAGCAC 21476
| ||||||||| ||||| | |||| |||| |||||||| | || |||||| || | |||
Sbjct 2556 GCGGAGGTGATTAACGATATCAACGGCGAGCTGGTCAATCTTTATCGGGTGTTGAAACAC 2497
Query 21477 CACCTGGAGGAGTTCGTGCGCCAGTTCAAGTGGGCGCTGGTCTCGCGTGAGATGTTCGCG 21536
|| ||||| ||||| |||||||||| || |||||||||||| || | |||||
Sbjct 2496 CATCTGGAAGAGTTTATGCGCCAGTTTAAATGGGCGCTGGTCAGCCGGGCGATGTATCAA 2437
Query 21537 TGGGAGAAGCTCAAGCACACCGACACGCTAACGGATATCCAGCGGGCCGCGCGGTTCTAC 21596
||| || ||| || ||||| || ||||| ||||||||||| || || || |||||
Sbjct 2436 TGGTTAAACATCACGCCGACCGAGACCCTAACCGATATCCAGCGCGCAGCACGTTTCTAT 2377
Query 21597 TACCTGCAGCAGCAGGGGTTTGGCGGGAAGGT----CAACTCGAACTTTGGCATCTCGAC 21652
|||||||| | |||| ||| ||||| ||||| | | | | ||||||| | | ||
Sbjct 2376 TACCTGCAAAAACAGGCGTTCGGCGGCAAGGTGGCGGAGCAC-ACCTTTGGCGTGACCAC 2318
Query 21653 CACGTCTGGCCCTGGGCTTAACCTGCTGCGGATCGAGGAGAACCTCAGCCAGGCGCACTT 21712
|| | || || | || ||||||||||| || || || | | | ||||| |
Sbjct 2317 TACAACGGGGCCGCGCCTGAACCTGCTGCGCATGGAAGAAGAGTTATCGCTCGCGCATCT 2258
Query 21713 GCGGCTCTCGCGCGTGTTCGTTGAGAACATGGACT-GGAAAGCGGTCATGAAGCGCTACG 21771
||| | || ||| | |||| || |||| | || ||| || || || || |
Sbjct 2257 GCGATTATCACGCACCACCATTGAACACCTGGATTGGGCCAGCTGT-ATTGCCCGTTATG 2199
Query 21772 ACCGGCCGCACACGTTGCACTATCTCGACCCGCCGTATTGGGCGACCGCTGGCTATG 21828
|||| ||||||||| || || |||||| ||||| |||| |||| |||||||
Sbjct 2198 ACCGTCCGCACACGCTGTTTTACTGCGACCCACCGTACTGGGGAACCGAGGGCTATG 2142
>seq2874
Length=8148
Score = 147 bits (162), Expect = 5e-31
Identities = 225/316 (71%), Gaps = 6/316 (2%)
Strand=Plus/Plus
Query 21297 TGGATGGGCGGCAAGCGCCGCCTGGCTAAACATATCCTGCCGAACTTCCCTGACCACCAG 21356
||| |||| || ||||| || |||||||||| ||| || || ||| ||||| ||| |
Sbjct 2438 TGGGTGGGAGGGAAGCGTCGGCTGGCTAAACGTATTCTATCGTGCTTTCCTGAGCACAAA 2497
Query 21357 TGCTACGTTGAGCCCTTCGCGGGCGGCGCGGCGCTGTTCTTCATGAAGCAACCCAGCAAA 21416
||||||||||| || ||| || || || |||||||| |||| ||| |||| | |
Sbjct 2498 TGCTACGTTGAACCATTCTGTGGGGGAGCTGCGCTGTTTTTCAGCAAGGAACCATCTACA 2557
Query 21417 GTGGAGGTGATCAACGACACCAACAGCGACCTGGTCAACTTGTACCGGGTGGTGCAGCAC 21476
| || ||| | ||||| | ||| |||| || | ||| | || | |||||| | |||
Sbjct 2558 GCCGAAGTGCTGAACGATATCAATGGCGATTTGATAAACCTCTATCAGGTGGTTAAACAC 2617
Query 21477 CACCTGGAGGAGTTCGTGCGCCAGTTCAAGTGGGCGCTGGTCTCGCGTGAGATGTTCGCG 21536
|| ||||||| || || || || ||||||||||| || | | || |||| |
Sbjct 2618 CATTTGGAGGAATTTGTACGTCAATTCAAGTGGGCCTTGAGCAGTAGGCAGCTGTTTGAT 2677
Query 21537 TGG-GAGAAGCTCAAGCA-CACCG-ACACGCTAACGGATATCCAGCGGGCCGCGCGGTTC 21593
||| | ||| || || | ||| | | |||||| ||||||||||| ||||| |||||
Sbjct 2678 TGGCTAAAAG---AAACACCTCCGCAAATGCTAACTGATATCCAGCGAGCCGCCCGGTTT 2734
Query 21594 TACTACCTGCAGCAGC 21609
||||| || |||||||
Sbjct 2735 TACTATCTTCAGCAGC 2750
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 125456488211712
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |