Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_010583.1 Length=111382 Score E Sequences producing significant alignments: (Bits) Value seq3176 123 2e-23 seq3532 84.2 2e-11 >seq3176 Length=18404 Score = 123 bits (136), Expect = 2e-23 Identities = 139/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 29158 ATTATATCGCCTGAGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGCGTCAGTG 29217 |||| || | |||||| || ||||| |||||||||| | ||| ||||| ||||| | Sbjct 6314 ATTACATTGACTGAGTGAAAGTACGGGTAATAACGTCTTGCTGCTGTTCTTTGGTCAGCG 6373 Query 29218 CATTAAATCGAACAGCATAGCCAGAGACACGAATGGTCAACTGAGGGTATTTTTCAGGAT 29277 || || || || ||||| ||||| ||||| ||||||||||| || |||||||| || | Sbjct 6374 AGTTGAAGCGCACGGCATAACCAGAAACACGGATGGTCAACTGCGGATATTTTTCCGGGT 6433 Query 29278 GTTTCTGTGCATCCAAAAGCTGATCACGACTTAACACATTGACATTTAGGTGCTGACCTC 29337 ||| | |||||||| ||| ||||| | | ||| || || || ||||| ||||| | Sbjct 6434 GTTCCATGGCATCCAACAGCATTTCACGGTTCATCACGTTCACGTTCAGGTGTTGACCAC 6493 Query 29338 CCTCGA 29343 | |||| Sbjct 6494 CTTCGA 6499 >seq3532 Length=11862 Score = 84.2 bits (92), Expect = 2e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 29171 AGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGCGTCAGTGCATTAAATCGAAC 29230 ||| || ||||| |||| ||||| || ||||| | |||| || || || || || Sbjct 11162 AGTGAAAGTACGCGTAATCACGTCACGTTGCTGTTCTGGGGTCAATGAGTTGAAACGCAC 11221 Query 29231 AGCATAGCCAGAGACACGAATGGTCAACTGAGGGTATTTTTCAGGATGTTTCTGTGCATC 29290 ||||| ||||| ||||| ||||||||||| ||||||||||| || ||||| ||||| Sbjct 11222 TGCATAACCAGAAACACGGATGGTCAACTGCGGGTATTTTTCCGGGTGTTTTACCGCATC 11281 Query 29291 CAAAAGCTGATCACGACTTAACACATTGACATTTAGGTGCTGACCTCCCTCGAC 29344 ||| ||||| | | || || || || ||||| || || || || || Sbjct 11282 TTCCAGCGTTTCACGGCGCAGAACGTTCACGTTCAGGTGTTGCCCCCCTTCCAC 11335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356280369448064