Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq10 131 1e-25 seq14 93.3 3e-14 seq676 91.5 1e-13 seq29 87.8 1e-12 >seq10 Length=2352850 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | ||| ||||| || |||||||| |||||||| || ||| |||| |||| || Sbjct 820100 AACGAGATGGAGGGTGGACTCTTTTTGAATGTTGTAGTCTGAAAGAGTTCTTCCGTCCTC 820041 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 |||||||| |||||| | |||||||||||||| || ||| || ||||| || || Sbjct 820040 CAATTGTTTACCAGCGAAGATCAAACGCTGTTGATCTGGTGGGATACCTTCTTTATCTTG 819981 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 |||||| ||| ||| |||| ||||| || ||| || || | ||| |||||||| Sbjct 819980 AATTTTAGCTTTAACATTTTCAATAGTGTCAGATGCTTCGACTTCCAGGGTGATGGTTTT 819921 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||| || || |||||||| ||||| Sbjct 819920 GCCAGTCAATGTCTTAACAAAAATCTGCAT 819891 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | ||| || || || ||||| || || |||||||| ||| ||||| | || || Sbjct 821012 AACAAGATGGAGAGTGGACTCTTTCTGGATATTGTAATCAGAGAGTGTTCTCCCATCCTC 820953 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 |||||||| |||||| | ||||||||||| ||||| |||||||| || ||||| Sbjct 820952 CAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCTTTGTCCTG 820893 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| ||| ||| |||| ||||| || ||||| || | || ||||| || Sbjct 820892 GATCTTGGCTTTGACATTTTCAATAGTGTCAGAGGCCTCTACTTCCAGTGTGATGGTCTT 820833 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||| || |||||||| || ||||| Sbjct 820832 CCCAGTCAATGTCTTTACAAAGATCTGCAT 820803 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCT 15008 |||||||| | | | ||| || || || ||||| ||||| || |||||||| ||| Sbjct 821258 GCCACCTCTGAGACGAAGAACCAAGTGGAGTGTAGATTCTTTCTGGATGTTGTAGTCGGA 821199 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 | | |||| | ||||| | |||||| ||||| | |||||||||||||| || || Sbjct 821198 CAAAGTTCTACCATCTTCCAGTTGTTTACCAGCAAAGATCAAACGCTGTTGATCTGGAGG 821139 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||| || |||||||| |||||| || || |||| || || || ||||| Sbjct 821138 AATGCCCTCCTTGTCCTGGATTTTGGCCTTGACGTTTTCAATTGTGTCAGAGGCCTCTAC 821079 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || ||||| || || || || ||||| || ||||| ||||| Sbjct 821078 TTCGAGTGTGATGGTCTTGCCAGTTAGGGTTTTGACGAAAATCTGCAT 821031 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | ||| || || || ||||| || || |||||||| ||| ||||| | || || Sbjct 820556 AACAAGATGGAGAGTGGACTCTTTCTGGATATTGTAATCAGAGAGTGTTCTCCCATCCTC 820497 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 || ||||| |||||| | ||||||||||| ||||| ||||| || ||||| || Sbjct 820496 CAACTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGAATGCCCTCCTTATCCTG 820437 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| || ||| |||| || || || ||| || |||| ||| || || || Sbjct 820436 GATCTTGGCCTTGACATTTTCGATGGTGTCAGAGGCTTCGACTTCTAGGGTGATCGTCTT 820377 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || || || || ||||| Sbjct 820376 TCCCGTGAGGGTCTTCACGAATATCTGCAT 820347 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || || || || ||||| || |||||||| || ||| |||| | ||||| Sbjct 820327 ACCAAGTGGAGTGTTGATTCTTTCTGGATGTTGTAGTCTGACAGAGTTCTGCCATCTTCC 820268 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | |||||| |||||| | ||||||||||| ||||| ||||| || |||||||| Sbjct 820267 AGTTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGG 820208 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| || || | || || || || || || || | || || || ||| Sbjct 820207 ATCTTGGCCTTGACGTTCTCAATCGTGTCAGATGCCTCCACTTCAAGTGTGATAGTCTTA 820148 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||| |||||| || ||||| ||||| Sbjct 820147 CCAGTCAAAGTTTTCACGAAAATCTGCAT 820119 >seq14 Length=2234412 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || ||||| | || || ||||| || || || || || ||||||||||| Sbjct 1933624 CCACCACGTAATCTGAGTACCAAGTGAAGTGTCGATTCCTTCTGAATGTTGTAATCAGAC 1933565 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | || || | ||||| |||||| | |||| | ||| ||||| ||| Sbjct 1933564 AGGGTGCGTCCATCCTCGAGCTGTTTACCAGCGAAAATCAGCCTCTGCTGGTCTGGGGGA 1933505 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || |||||||| ||||||| ||| ||| | || || || || | || || Sbjct 1933504 ATGCCCTCCTTGTCCTGAATTTTGGCTTTGACATTCTCGATTGTGTCAGAAGCCTCCACC 1933445 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAA 15183 || | ||| ||||| || || || || |||||||| || || ||||| || ||| Sbjct 1933444 TCGAGGGTGATGGTCTTCCCAGTTAGGGTTTTTACGAAGATCTGCATGTTGGAA 1933391 >seq676 Length=265522 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||| ||||| || || || ||||||||||| ||| | | ||||||| Sbjct 178346 ACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGACCGTCTTCC 178405 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 |||||||| |||||| | |||| | ||| ||||| |||||||| ||||| || Sbjct 178406 AATTGTTTTCCAGCGAAGATCAGTCTCTGCTGGTCTGGGGGAATTCCCTCCTTATCCTGG 178465 Query 15088 AT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||||| || || | || || ||||| || || || | ||| ||||| || Sbjct 178466 ATCTTTGC-CTTCACGTTCTCGATGGTATCAGAGGCCTCGACCTCGAGGGTGATGGTCTT 178524 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 || ||||| ||||| || || || ||||| ||| Sbjct 178525 GCCCGTCAGCGTTTTCACGAATATCTGCATTTTT 178558 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||||||||| || || || ||||||||||| ||| | | | || || Sbjct 177434 ACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAATCAGAAAGAGTGCGTCCATCCTCA 177493 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || |||||| | |||| | ||| |||||| |||||||| ||||| || Sbjct 177494 AGCTGCTTTCCAGCGAAGATCAGTCTCTGCTGGTCGGGGGGAATTCCCTCCTTATCCTGG 177553 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| || ||| | || || || ||| || || || | ||| ||||| || Sbjct 177554 ATTTTAGCCTTCACATTCTCGATGGTGTCGGAGGCCTCGACCTCGAGGGTGATGGTCTTT 177613 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| || || || || || ||||||||| Sbjct 177614 CCTGTGAGGGTCTTGACGAAGATTTGCATA 177643 >seq29 Length=2726036 Score = 87.8 bits (96), Expect = 1e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 14989 TTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATC 15048 || || |||||||| || |||| | | | || ||||||||||| |||||| | ||| Sbjct 1034236 TTCTGGATGTTGTAGTCAGAGAGAGTACGGCCATCCTCTAATTGTTTTCCAGCGAAGATC 1034177 Query 15049 AAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCT 15108 || | ||| ||||| ||||| || ||||| || ||| ||| ||| ||| |||| Sbjct 1034176 AACCTCTGCTGGTCTGGAGGAATGCCCTCCTTATCCTGAATCTTGGCTTTGACATTTTCG 1034117 Query 15109 ATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAA 15168 || ||||| | || || || | ||| ||||| || || |||| || || || ||| Sbjct 1034116 ATCGTATCAGAAGCCTCAACCTCAAGGGTGATGGTCTTCCCCGTCAATGTCTTGACGAAA 1034057 Query 15169 ATTTGCAT 15176 || ||||| Sbjct 1034056 ATCTGCAT 1034049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357374716522880