Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_011589.1 Length=40287 Score E Sequences producing significant alignments: (Bits) Value seq2694 174 4e-39 seq2969 116 1e-21 >seq2694 Length=15341 Score = 174 bits (192), Expect = 4e-39 Identities = 351/512 (69%), Gaps = 9/512 (2%) Strand=Plus/Minus Query 24842 CCGCACTTCCCGACCCACGACTGCTACGTCGAGGCATTCGCCGGCGGTGCCGCGTCGTTG 24901 |||| |||||| || || ||||||||| ||| |||| |||| || ||| || Sbjct 2637 CCGCGCTTCCCTACGCATACCTGCTACGTGGAGCCATTTTGTGGCGCGGCGGCGCTCTTT 2578 Query 24902 CTTATGCGGCCGTACCCAGCACAGATGGAGGTGCTCAACGACATCAACGGCGAGCTGGTG 24961 ||||| | | ||| |||| || ||||||| | ||||| ||||||||||||||||| Sbjct 2577 TTTATGAAGTC--ACCGAGCAAAGC-GGAGGTGATTAACGATATCAACGGCGAGCTGGTC 2521 Query 24962 TCCCTGTACCGCTGCGTGCGCCACCACCTGGATGAGTTCGTGCGCATGTTCCGCTGGTCC 25021 || || || || ||||| ||||| ||||| ||||| ||| ||| | Sbjct 2520 AATCTTTATCGGGTGTTGAAACACCATCTGGAAGAGTTTATGCGCCAGTTTAAATGGGCG 2461 Query 25022 CTGGTCTCGCGACAGATGTTCGAGTGGGCACAGATGGAGCGCCCGGAGACGCTGACCGAC 25081 |||||| || ||||| | ||| | | || || | ||||| || ||||| Sbjct 2460 CTGGTCAGCCGGGCGATGTATCAATGGTTAAACATCACGCCGACCGAGACCCTAACCGAT 2401 Query 25082 ATCCAGCGCGCAGCGCGGTTCTACTACCTGCAAAAGCTGGCATTCGGCGGCAAGGTGCAG 25141 |||||||||||||| || ||||| ||||||||||| | ||| ||||||||||||||| | Sbjct 2400 ATCCAGCGCGCAGCACGTTTCTATTACCTGCAAAAACAGGCGTTCGGCGGCAAGGTGGCG 2341 Query 25142 GGGCAATCGTTCGGTGTGGTGACGGCTGGTGGGCCGCGATTGAACCTTCTGCGCATTGAA 25201 | ||| | || || ||| || | |||||||| ||||||| |||||||| ||| Sbjct 2340 GAGCACACCTTTGGCGTGACCACTACAACGGGGCCGCGCCTGAACCTGCTGCGCATGGAA 2281 Query 25202 GAGGAACTGAGCGC-GGTGCATCTTCGCCTGGCAAACACCGTAATCGAGTGCCTGCCATG 25260 || | | | | ||| | |||||| || | || |||| || || |||| || Sbjct 2280 GAAG-AGTTATCGCTCGCGCATCTGCGATTATCACGCACCACCATTGAACACCTGGATTG 2222 Query 25261 G--CAGGAGTGCGTGCGGCGCTACGATCGCCCGGGAACACTGTTCTACCTTGATCCGCCC 25318 | ||| || ||| || || || || ||| || ||||| ||| || || || Sbjct 2221 GGCCAGCTGT-ATTGC-CCGTTATGACCGTCCGCACACGCTGTTTTACTGCGACCCACCG 2164 Query 25319 TACTGGGAAACCGAGGGCTATGGCGTTGAGTT 25350 ||||||| |||||||||||||||||| || || Sbjct 2163 TACTGGGGAACCGAGGGCTATGGCGTCGATTT 2132 >seq2969 Length=1929 Score = 116 bits (128), Expect = 1e-21 Identities = 337/511 (66%), Gaps = 7/511 (1%) Strand=Plus/Plus Query 24842 CCGCACTTCCCGACCCACGACTGCTACGTCGAGGCATTCGCCGGCGGTGCCGCGTCGTTG 24901 |||||||||||| | || ||||||||| || | || |||| || ||| || Sbjct 239 CCGCACTTCCCGGCGCATATCTGCTACGTGGAACCGTTTTGTGGCGCGGCGGCGCTCTTC 298 Query 24902 CTTATGCGGCCGTACCCAGCACAGATGGAGGTGCTCAACGACATCAACGGCGAGCTGGTG 24961 ||||| | | |||||||| || ||| ||| | ||||| ||||||||||| ||||| Sbjct 299 TTTATGAAGTC--ACCCAGCA-AGGCGGAAGTGATTAACGATATCAACGGCGAACTGGTC 355 Query 24962 TCCCTGTACCGC-TGCGTGCGCCACCACCTGGATGAGTTCGTGCGCATGTTCCGCTGGTC 25020 || || || ||| || ||||| ||||| || || | ||| ||| ||| | Sbjct 356 AATCTCTATCGGGTGC-TGAAACACCATCTGGAAGAATTTATACGCCAGTTTAAATGGGC 414 Query 25021 CCTGGTCTCGCGACAGATGTTCGAGTGGGCACAGATGGAGCGCCCGGAGACGCTGACCGA 25080 |||||| | ||||| | ||| | || | | ||||| | ||||| Sbjct 415 GCTGGTCAGCAGGGCGATGTATCAATGGTTGAAAATCACCCCGACCGAGACCTTAACCGA 474 Query 25081 CATCCAGCGCGCAGCGCGGTTCTACTACCTGCAAAAGCTGGCATTCGGCGGCAAGGTGCA 25140 ||||||||||| || || ||||| ||||||||||| | ||| ||||||||||||||| Sbjct 475 TATCCAGCGCGCGGCCCGTTTCTATTACCTGCAAAAACAGGCGTTCGGCGGCAAGGTGGC 534 Query 25141 GGGGCAATCGTTCGGTGTGGTGACGGCTGGTGGGCCGCGATTGAACCTTCTGCGCATTGA 25200 | ||| | || || ||| || | || ||| || ||||||| ||||||| || Sbjct 535 CGAGCACACCTTTGGCGTGACCACCACCACTGCGCCACGCCTGAACCTGTTGCGCATGGA 594 Query 25201 AGAGGAACTGAGCGCGGTGCATCTTCGCCTGGCAAACACCGTAATCG-AGTGCCTGCCAT 25259 ||| |||||| || ||||| || || || |||| || | | | || | Sbjct 595 AGAAGAACTGTCGTTGGCTCATCTGCGACTATCACGCACCTCCATTGAACAACTTGACTG 654 Query 25260 GGCAGGAGTGCGTGCGGCGCTACGATCGCCCGGGAACACTGTTCTACCTTGATCCGCCCT 25319 |||| | ||| | ||||| || || ||| || ||||||||| || ||||| | Sbjct 655 GGCAAG-CTGCATTGCCCGCTATGACCGTCCGCACACGCTGTTCTACTGCGACCCGCCGT 713 Query 25320 ACTGGGAAACCGAGGGCTATGGCGTTGAGTT 25350 | |||| || || || ||||| || || || Sbjct 714 ATTGGGGGACGGAAGGTTATGGGGTGGATTT 744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128790731094784