Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_011611.1 Length=36885 Score E Sequences producing significant alignments: (Bits) Value seq3688 560 2e-155 seq3855 129 1e-25 seq1892 105 2e-18 >seq3688 Length=22785 Score = 560 bits (620), Expect = 2e-155 Identities = 908/1307 (69%), Gaps = 25/1307 (2%) Strand=Plus/Plus Query 14159 CCGGACGGCCAGCACGAAGCCATTGCGGCGCCGCGTGGTAATGCCAAGTCCACCCTGGTG 14218 ||| | ||| |||| || ||||| || ||||||||||| | |||||||| || ||||| Sbjct 6451 CCGAAAGGCGAGCAGGACGCCATCGCCGCGCCGCGTGGGGAGGCCAAGTCAACGCTGGTC 6510 Query 14219 AGCCAGATATTCGTGATCTGGTGCGTACTCACCGGCCGCAAGCATTACCCCCTGATCATC 14278 |||||| | || ||| | ||||| | | |||| |||||| || ||||| | | Sbjct 6511 AGCCAGCTGTTTGTGCTGTGGTGTCTGGTGCGCGGCATCAAGCACTATGCCCTGGTGGTG 6570 Query 14279 ATGGATGCCTTCGAACAGGCCGCCACGATGCTGGAAGCGATCAAGGCGGAGCTGGAGTTC 14338 |||||| || |||| |||||| | ||||||| ||||| |||||||| |||||||| ||| Sbjct 6571 ATGGATTCCATCGACCAGGCCTACCCGATGCTCGAAGCCATCAAGGCCGAGCTGGAATTC 6630 Query 14339 AACCCGCGCCTGGCCACCGACTTCCCCCAGGGCGCCGGCAAGGGCCGCGTCTGGCAGGTC 14398 ||||| || ||| | ||||||||| | | | ||||| ||| |||||||||||| | Sbjct 6631 AACCCCCGGCTGCTGGCTGACTTCCCCGAAGCCTGCGGCATGGGGCGCGTCTGGCAGATG 6690 Query 14399 GGCACCATCGTTACGGCGAACGATGCCAAGGTCCAGGTCTTCGGCTCCGGCAAGCGGATG 14458 ||||||||| | ||| |||||| |||||| ||||| |||| ||| || | || Sbjct 6691 GGCACCATCCTGACGCGCAACGATATCAAGGTGCAGGTGGCCGGCAGCGGTAAAAAGCTG 6750 Query 14459 CGCGGCCTTCGACACGGCCCGCACCGTCCTGACCTGGTGATCGGCGACGACCTGGAGAAC 14518 |||||||| || ||||| ||| |||| |||||||||||||| ||||| | |||||| Sbjct 6751 CGCGGCCTGCGCCACGGGCCGTACCGCCCTGACCTGGTGATACTGGACGATATTGAGAAC 6810 Query 14519 GACGAGAACGTCCGCAGCCCGGAGCAACGCGACAAGCTGGAAAACTGGCTGAAAAAGACT 14578 |||||| | || |||| |||||| || ||||||||||||||||||||||||| ||| || Sbjct 6811 GACGAGCAGGTACGCAACCCGGACCAGCGCGACAAGCTGGAAAACTGGCTGAGAAAAACC 6870 Query 14579 GTGCTGTCCCTCGGCTCCGCCGACGACACCATGGACNNNNNNNNNNNNNNNNNNNNNNNN 14638 |||||| | || || || | || | | || Sbjct 6871 GTGCTGCCGCTGGGTGGTGCGGGCGCAAAACTCGATGTGGTCTATATCGGCACCATCCTG 6930 Query 14639 NNNTACGACTCGGTCCTGTCGCGCCTGCTGAAAAACCCTCTGTGGAAGC-GGCGCAAGTT 14697 ||||||||||| | || ||| ||||| ||||| || ||| || ||||| || Sbjct 6931 CATTACGACTCGGTGTTATCACGCACCCTGAATAACCCGCTATGGCGGCAGGCGCGCTTT 6990 Query 14698 CAAGGCGATCATCGAATGGCCGCACCGCATGGACCTGTGGGAGAAGTGGGAGGAACTGCT 14757 ||||| | | | |||||| | || ||||||||| |||||| | | | Sbjct 6991 -AAGGCCCTGCGCCAGTGGCCGGTGAACCTGTCGTTGTGGGAGAGCTGGGAGCAGCGCTT 7049 Query 14758 GCTCAACTCCGACGACGAGGGCGCCGCCGCTCTGGCCTTCTACCAGGAACGCGCCGCCGC 14817 || ||| | || || | | || | || || || | || | ||| Sbjct 7050 GCGTAACCAGGGAGAGGATG------CGGCGCAGGATTTTTATACGTCACACCGTACCGA 7103 Query 14818 CATGGAGGACGGCGCGATCATCTGCTGGCCGGATGGGCAGCCCCTTTACAAACTCATGGT 14877 |||||||| |||||| ||| |||| | | ||| || || | || ||| Sbjct 7104 GATGGAGGAAGGCGCGGAAGTCTCCTGGTCCGCACGGCCGCTGCTGACC---CTGATGCA 7160 Query 14878 GAAGCGTGCCCGCGATGGGCACTCGGCGTTCGACTCGGAACAACAGAACGACCCTGTCCA 14937 | || ||||| || || ||| | | || || | || | ||||| | ||| ||| Sbjct 7161 TATCCGCGCCCGTGACGGTCACGCCACCTTTGATGCCGAGTACCAGAATGCCCCGGTCAG 7220 Query 14938 GGGCGAGAACGCCCCCTTCGCC----GCCTGCATCACGTTCTGGGTCAACCGCCTGGCGC 14993 || || | || | || ||| |||||||| |||||||||||||| || Sbjct 7221 CGGTGAAGATGCGCTGTTTGCCCACTGCCTGCAT----TTCTGGGTCAACCGGCTTAACG 7276 Query 14994 AGTGGATGTTCTACGGCGCGTGCGACCCGTCCCTGGGTAAGCAAGGCTCCAGTCGCGACC 15053 ||||| | |||||||| || |||||||| ||| || ||| || |||| || |||| Sbjct 7277 AGTGGCTTTTCTACGGGGCCTGCGACCCCAGCCTCGGCAAGGCCGGGGCCAGCCGTGACC 7336 Query 15054 C--CAGTGCCATCCTGGTGGGTGGGTTCAACCGGGAGACAGGCGTCCTGGACGTGGTCGA 15111 | ||| || | ||||| ||||| || || || | || ||||| ||||| ||||| || Sbjct 7337 CGTCAGCGC--TGCTGGTCGGTGGCTTTAATCGCGCCACCGGCGTGCTGGATGTGGTGGA 7394 Query 15112 GGCCGCCATCCGCAAGCGCCTGCCGGACAAGATCATCGAGGACATCATCGCCATGCAACG 15171 || || |||||||| ||||||||| || ||| | || || || ||||| Sbjct 7395 AGCGCAGATACGCAAGCGGCTGCCGGACGCCATTATCAGCAATATTATTGCTCTGCAAAA 7454 Query 15172 GGCCTATCACTGCCTGGTGTGGGGTGTCGAGGCGGTCCAGTTCCAGGAGTTCCTGCGCAC 15231 || || ||||| ||||||||||| | |||||||| ||||| ||||||||||||||||| Sbjct 7455 GGAATACCACTGTCTGGTGTGGGGCATTGAGGCGGTGCAGTTTCAGGAGTTCCTGCGCAC 7514 Query 15232 CGAGCTGGTGAAGCGCTCGGCCAAGGCTGGCT-GCCCAGTACCTGCCCGAGCGATCACGC 15290 ||||||| | |||||| ||| || ||||| | ||| || || || || || || | | Sbjct 7515 CGAGCTGATTAAGCGCGCGG-CACAGCTGGGTCACCCGGTGCCGGCGCGGGCTATTATCC 7573 Query 15291 CACACGCCGACAAGCTACTGCGAATCGAAAGCCTCCAGCCGCACATGGCCAACGGCCTAA 15350 | || ||||||||||| |||| ||||| | ||| ||||| || |||| ||||| || | Sbjct 7574 CCCATGCCGACAAGCTGTTGCGTATCGAGACCCTGCAGCCCCATATGGAAAACGGGCTTA 7633 Query 15351 TCCGTCTGCACCCCAGCCAGACCGTCCTGGAACAACAGCTGCGCCACTTCCCGGCCGCAG 15410 ||||||||||| ||||||||||| ||| ||| |||||||||||||| || ||| | Sbjct 7634 TCCGTCTGCACGCCAGCCAGACCACACTGATACAGCAGCTGCGCCACTTTCCCCGCGCCG 7693 Query 15411 ACCACGACGATGGCCCCGACGCCCTGCACATGCTCTGGATGCTGGCC 15457 |||| ||||| ||||| ||||| ||||| |||||||||| ||||||| Sbjct 7694 ACCATGACGACGGCCCGGACGCGCTGCATATGCTCTGGACGCTGGCC 7740 Score = 131 bits (144), Expect = 4e-26 Identities = 594/919 (65%), Gaps = 41/919 (4%) Strand=Plus/Plus Query 15718 CATCCTGGTCGAGGCCGAACAGGGCAACCTCCAAGCCCAAGCCGAACTGTTCATGGACAT 15777 ||||||| ||||||||| ||||| |||| || || || ||||| | || || Sbjct 7970 CATCCTGAGCGAGGCCGAGCAGGGGCACCTGGTGCGTCAGGCTGACCTGTTTTTTGATAT 8029 Query 15778 GGAGGAACGCGACGCCCACCTGTTCGCCGAAATGAGCAAGCGAAAGCGCGCAATCCTTG- 15836 |||||| ||||||| |||||| || ||||| ||||||||||| ||| | || || Sbjct 8030 GGAGGAGCGCGACGGCCACCTTTTTGCCGAGATGAGCAAGCGC---CGC-CGTTCGGTGA 8085 Query 15837 -GCCTGG-ATTGGGCGG-TCGAGCCCCCGCGTAACGCCTCGGCGGCCGAGAAAGCCGATG 15893 ||| | |||| | | ||| |||||| | || ||| || |||| ||||| Sbjct 8086 TGCCGCTCACCTGGCGCATTGTGCCGCCGCGTCATCCCAATGCGCAGGA-AAAGGCGATG 8144 Query 15894 CCG-ACTACCTGCACGAGCTGTTGCTCGACCTGGAAGGACTGGAGGACTTGCTGCTCGAT 15952 || || | | ||| ||| |||||| | | || ||||| |||| Sbjct 8145 GCGGACGCCGCGACCGAATGGTTTTCAGACCTGCCGGAGTTTGAAACGCTGCTGTTCGAC 8204 Query 15953 GCGCTGGACGGCATCGGCCACGGCTACAGCTGCATTGAGCTGGAGTGGGCGCTACAGGGG 16012 |||||||| ||| |||||||||| | | | || ||| |||| ||||| | Sbjct 8205 TTGCTGGACGCCATTGGCCACGGCTTTGCCGCCGTGGAAATGGTGTGGAA---ACAGGCG 8261 Query 16013 CGCGAG---TGGATGCCGCTG-GCGTTCCACCACCGGCCGCAGAGCTGGTTCCAG--CTC 16066 | ||| |||| ||| || ||| || | || ||||| ||||||||||| | | Sbjct 8262 GAAAACATCTGGCTGCC-CTGTGCCTTCTACAAGCGCCCGCAACGCTGGTTCCAGACCGC 8320 Query 16067 AATCCCGAAGACCAGAACGAGCTGCGGCTGCGCGACAACAGCCCGGCCGGCGAAGCCTTG 16126 || || | |||| |||| | || ||| ||| ||||| | ||| | | | Sbjct 8321 AACCC--ATGACCGTAACGCTATCCGCCTGATTGACGGCAGCCTTGACGGTGCTGAGCTT 8378 Query 16127 CAGCCCTTCGGCTGGATCATTCACCGGCCGCGTGCGCGCTCCGGCTATGTGGCCCGCAGC 16186 | ||||| |||||| | | || || | | || ||||| || ||| ||| Sbjct 8379 AATCCCTTTGGCTGGCTGCTGCATCGCCATCAGGCCAAAAGCGGCTGGGTAGCCGAAAGC 8438 Query 16187 GGCCTGTTCCGCGTGCTGGCCTGGCCGTACCTGTTCCGCCACTACGCCACCTCCGACCTG 16246 || |||||||| || |||| ||| | ||||||||| | || || |||||| Sbjct 8439 GGTCTGTTCCGGGTACTGGTGTGGACCTACCTGTTCAAGAATATTGCTGCCCGTGACCTG 8498 Query 16247 GCGGAAATGCTGGAAATCTATGGCCTGCCGATCCGGCTGGGGAAATA-TCCGCCAGGTAC 16305 |||||| | ||||||||||| |||||||||| ||| |||| | || |||| | || | Sbjct 8499 GCGGAATTTCTGGAAATCTACGGCCTGCCGACGCGGGTGGGCACCTATTCCGACGGGGCC 8558 Query 16306 TGCCGACGAGGAGAAGGCAACCT--TGCTGCGGGCCGTTACCGGCCTGGGCCATGCTGCC 16363 | || || || ||| ||| | ||||| |||| | || |||||| ||| ||| Sbjct 8559 AG-TGAAGAAGAAAAG--AACATGCTGCTGTGGGCGCTGCGCGACCTGGGGCATAACGCC 8615 Query 16364 GCAGGGATCATCCCCGAAACCATGGCCATCGACTTCCAGCAGGCGGCGCAGGGCAGCAG- 16422 | || || |||| |||| || || ||| ||| || || || ||||| |||| Sbjct 8616 GGCGGCATTATCCACGAACGCACCGCGATCCGCTTTGAGTCCGCCGCCCAGGG--GCAGG 8673 Query 16423 -CGAGCCGTTCCTGGCGATGATGCGGCAAAGCGAAGACGCCATATCCAAGGCGGTCCTGG 16481 ||| ||||||| | ||||||| | ||||| | || ||||||| | |||| Sbjct 8674 TCGACCCGTTCCAGTATATGATGCAGTGGTGCGAAAGCACCCAGTCCAAGGTCATTCTGG 8733 Query 16482 GCGGCACCCTGACCAGCACCACCAGCCAGTCAGGC---GGCGGTGCTTTTGCCCTGGGCC 16538 ||||||||||||||| |||| | | | ||| || | | ||||| ||| Sbjct 8734 GCGGCACCCTGACCA-----CCCAGGCGGAC-GGCAAGAGCAGCACCAACGCCCTAGGCA 8787 Query 16539 AGGTGCATAACGAGGTTCGGCACGACTTGCTGGCATCCGATGCCCGCCAGTTGGCGGCCA 16598 | ||||||||||| || || ||||| || || |||||| ||| |||| | || Sbjct 8788 ACGTGCATAACGAAGTGCGCCACGAGCTGACCGCCAGCGATGCGGTGCAGCTGGCCGGCA 8847 Query 16599 CGTTGTCCCGCGATCTGCT 16617 || || |||| || ||||| Sbjct 8848 CGCTGACCCGTGACCTGCT 8866 Score = 109 bits (120), Expect = 1e-19 Identities = 162/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 17496 CCGCCTGGATACCATCTACCAGACCAACATGCAGTCGGCCTACATGGCAGGGCGCTAC-- 17553 ||| ||||| ||||| | | ||||| | || || ||||| ||||| |||||||| Sbjct 9714 CCGGCTGGAGACCATTTTTCGCACCAATACCCAATCTGCCTATATGGCCGGGCGCTATCA 9773 Query 17554 GCGGCCGCCTACGAAGCCAGGGAAACCCACCCTTACTGGATGTATGTGGCGGTGATGGAT 17613 ||||| || ||| | || | || |||||| |||||||||||||||||| Sbjct 9774 GCGGCTGCGCGAGAA--CGTCGACCAGCGGCCCTACTGGCAGTATGTGGCGGTGATGGAC 9831 Query 17614 GGCGTTACCCGGCCCAGCCATGCCGCCCTGCATGGGAAAGTGTTCAGGTGGGACGATCCG 17673 || ||||| |||||||||||||| |||||||| |||||| | | |||||| || Sbjct 9832 AGCCACACCCGCCCCAGCCATGCCGCGCTGCATGGCCGGGTGTTCCGTTATGACGATGCG 9891 Query 17674 ATCTGGCAGCACATCACCCCGCCCAATGGCTACAACTGCCGGTGCCGG 17721 |||| | | | ||||| || |||||||||||||| |||||| Sbjct 9892 GGCTGGGATACCCTGTTTCCGCCGAACGGCTACAACTGCCGCTGCCGG 9939 >seq3855 Length=27953 Score = 129 bits (142), Expect = 1e-25 Identities = 229/330 (69%), Gaps = 8/330 (2%) Strand=Plus/Minus Query 20347 AACACCTATGGCTGGCTGGGGCAGTTCCCCAAGTTGCGCGAGTGGATCGGTCAGCGTGTC 20406 || ||||| ||||||||||||||||| ||| ||| || |||||| |||| ||| Sbjct 12038 AATACCTACGGCTGGCTGGGGCAGTTTCCCGCGTTCCGGGAGTGGGTCGGCTCGCGCAGT 11979 Query 20407 ATCAAGGACATGGCGGCCCAGGGCTACCAGATCACCAACAAGCTCTTCGAATCGACCGTG 20466 ||| || | ||| || | | |||||| |||| ||||||| || ||| || || Sbjct 11978 ATCCAGCAGATGAAGGTCTATGGCTACGCCATCAACAACAAGACCTATGAAGGCACGGTC 11919 Query 20467 GGCGTAAAACGTACCGACATCGAGGACGACAACCTCGGCGTCTACGGACCGCTCATGCAG 20526 | | | | || || | ||||| ||||| ||||||| || | ||||| | ||| Sbjct 11918 GCCATTACCCGCGATGATTTTGAGGATGACAATCTCGGCGCGTATAGCCCGCTGTTTCAG 11859 Query 20527 GAAATGGGGCGTGCTGCCGGCGCGCATCCCGACGAACTGGTCTT---CGCCCTGCTCAAG 20583 |||||||| || || |||| ||| || || || || ||||| || |||| ||| | Sbjct 11858 GAAATGGGCCGCGCCGCCGCCGCACAACCGGATGAGCTGGTGTTTACCGCCTTGCGC--- 11802 Query 20584 GCCGGCAACGCCAATCTCTGCTACGACGGTCAAAAC-TTCTTCGACACCGATCACCCGGT 20642 | |||||| | |||||||||||| |||| | || || || | ||| || ||||| Sbjct 11801 GACGGCAATAAAACCGACTGCTACGACGG-CAAACCTTTTTTTGATAGCGAACATCCGGT 11743 Query 20643 CTATCCGAACGTGGATGGCACCGGCACGGC 20672 ||||| || || || |||| |||||| || Sbjct 11742 GTATCCCAAGGTCGACGGCAGCGGCACCGC 11713 >seq1892 Length=4253 Score = 105 bits (116), Expect = 2e-18 Identities = 174/251 (69%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 12884 ATGGCGCACCCGAAGGAAACCCGCGACGCCCTGCGCCGCGCCTACGTCCTCGACCGCCAG 12943 |||||||||||| |||||| ||||||| | ||||| || ||||| | ||| | | Sbjct 391 ATGGCGCACCCGCAGGAAATCCGCGACACGCTGCGACGGGCCTATATTTTCGGGCAGATG 332 Query 12944 TCCCTGGAGGTCGCGGCCGCCATGTTCGGCGTCTCCTACGGCACCGCCCGCCGCTGGAAA 13003 ||||| ||| | || ||||| | ||||| | | ||| || || || ||||||||| Sbjct 331 TCCCTTGAGATTGCCGCCGCGCAATCGGGCGTTGCGTTCGGAACGGCACGGCGCTGGAAA 272 Query 13004 CAGCAGGCGGAAGCCGAGGGGGACGACTGGGACAGGGCGCAATCGGCGCAGTTGCTGGCC 13063 | | || | | || ||| || |||||||||| | || | ||||| || |||| Sbjct 271 AAAGACGCTCAGGACGCGGGTGATGACTGGGACAAGCAGCGGGCTGCGCATATGATGGCG 212 Query 13064 GGTGGCGGACTGGAGGACGTGGCGCGCCAGGTGCTGGCCGGCCTGGTGACCCAGTTCCAG 13123 || || || |||||||| | | ||| ||| | |||| ||||| || |||| |||| Sbjct 211 GGCGGTGGTCTGGAGGATATTGGCCGCGCGGTATTAACCGGGCTGGTAACGCAGTACCAG 152 Query 13124 GCCACCATGGA 13134 |||| |||| Sbjct 151 ACCACGCTGGA 141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117904844061952