Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq14 138 1e-27 seq10 113 4e-20 seq676 95.1 1e-14 seq29 84.2 2e-11 >seq14 Length=2234412 Score = 138 bits (152), Expect = 1e-27 Identities = 588/914 (64%), Gaps = 34/914 (4%) Strand=Plus/Plus Query 123383 AGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACGCGTAAAAGA 123442 ||| || || |||| ||||| | ||| ||||||||||||| ||| ||| || || | Sbjct 231701 AGCACGTGAGCTGTTCTACGCCCTGTGGATACCCGATTTGTTCATGAAACGTGTCAAGGC 231760 Query 123443 CGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAGCGACGTTTACGG 123502 ||||| ||| | ||||| ||| | |||||| ||| | | ||| || || Sbjct 231761 AGACGGTCCCTGGAGTTTGATGTGCCCCCACGAGTGTCCAGGCCTCTGTGACACTTGGGG 231820 Query 123503 CAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAA---ACAGGTTAGTCA 123559 | | || || || ||||| | | |||||| | | |||| ||| | |||| Sbjct 231821 TGAGGAATTCGATAAGCTGTACACAAAGTACGAG-GAGGAGGCTCGTTACAAGC--GTCA 231877 Query 123560 GGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGAAACCGGAACGCC 123619 || || || ||||| ||| | | ||| | ||||||| || || ||||| || Sbjct 231878 AGTGCCAGCCCGTGAGCTGTGGACAGCAATTCTAATGTCACAAGTTGAGACTGGAACTCC 231937 Query 123620 GTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAACTTGGGAACAAT 123679 |||||||| ||||| || ||||||||||||||| ||||||||| ||| | |||||||| Sbjct 231938 CTACATGCTGTACAAGGATGCCTGCAACAGGAAATCCAATCAGAAGAACCTTGGAACAAT 231997 Query 123680 AAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGA-TGCCGATCAAGTGGCCG 123738 |||||| || || | ||| |||| || | || ||| ||| ||||| |||| || | Sbjct 231998 AAAATGCAGCAACTTGTGCACCGAGATCGTTGAGTAC-TCGAGCCCCGATGAAGTTGCTG 232056 Query 123739 TGTGTAATTTGGCTTCGATTTGCGTGA--ATCGTTGCG--TC----GAAAACGGCGCTTT 123790 | || |||||||| ||||| || | || ||| | || ||| | | | | Sbjct 232057 TCTGCAATTTGGCATCGATAGCAGTCAACATGTTTGTGGATCCAGTGAAGAAG--ACCTA 232114 Query 123791 TAATTTCCAAACGCTCAA-ACGCATAACAAAAACTGTAGTAA--AG-AATTTGAACAAAA 123846 | | ||| | | ||||| || |||| || || | || ||| | ||| Sbjct 232115 TGACTTCGACAAACTCAAGACAGTCGTCAAA----GTTGTCACCAGAAATCTCGACAGGG 232170 Query 123847 TTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAACACAGAC 123906 | ||||| || |||| ||||| | ||||| || | | || || ||| |||| | | Sbjct 232171 TCATCGACGTCAATTACTATCCAGTTGAGGAGGCAAGAGTCTCCAACATGAGACACCGTC 232230 Query 123907 CGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGCCGTACG 123966 | | ||| | || |||| || |||| || || || || || |||| || | || Sbjct 232231 CCATGGGAATTGGAGTTCAGGGTCTGGCAGATGCATTCCTACTGATGCGTTATCCATTCG 232290 Query 123967 AAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTACGGCGCTT 124026 | || || || || || || || | || || ||| || | || || || || Sbjct 232291 ACAGTGATGAGGCCCAGAAACTCAACATCCAGATCTTCGAGACCCTCTACTATGGTGCCC 232350 Query 124027 TGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCGGGCAGCC 124086 ||||||| ||| ||||| || || | || | ||||| | ||| ||| | Sbjct 232351 TGGAGGCATCCTGTGAACTCGCCCAAGAGAAGGGTACTTACGAGACGTACAAAGGCTCGC 232410 Query 124087 CGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGG 124146 | | |||| || || | ||||||||||||||| || ||||||||||| | |||| Sbjct 232411 CAGTCAGCCAGGGCATCCTCCAGTACGACATGTGGGGTGTCACACCGACAAACCTCTGGG 232470 Query 124147 ACTGGAGCGTTTTAAAACAACG----CATATCGACGCACGGTTTGCGTAACTCGCTGTTG 124202 ||||| || | || ||| | ||||| ||||| | | ||||| ||| | Sbjct 232471 ACTGG-GC---TAAACTCAAGGAGAAAATATCTCAACACGGGGTCAGGAACTCTCTGCTA 232526 Query 124203 GTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAG 124262 |||| ||||| || ||| | || || || || | || |||||||| || ||||| Sbjct 232527 CTGGCACCAATGCCAACAGCATCAACAGCCCAGATCCTGGGTAACAACGAGGCCATCGAG 232586 Query 124263 CCGTTCACTAACAA 124276 || | ||| | ||| Sbjct 232587 CCCTACACCAGCAA 232600 Score = 127 bits (140), Expect = 2e-24 Identities = 488/754 (65%), Gaps = 28/754 (4%) Strand=Plus/Plus Query 123598 CACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCA 123657 ||||||| || || ||||| || |||||||| ||||| || ||||||||||||||| ||| Sbjct 775469 CACAAGTTGAGACTGGAACTCCCTACATGCTGTACAAGGATGCCTGCAACAGGAAATCCA 775528 Query 123658 ATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACA 123717 |||||| ||| | |||||||||||||| || || | ||| |||| || | || ||| Sbjct 775529 ATCAGAAGAACCTTGGAACAATAAAATGCAGCAACTTGTGCACCGAGATCGTTGAGTAC- 775587 Query 123718 GCGA-TGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGA--ATCGTTGCG 123774 ||| ||||| |||| || || || |||||||| ||||| || | || ||| | Sbjct 775588 TCGAGCCCCGATGAAGTTGCTGTCTGCAATTTGGCATCGATAGCAGTCAACATGTTTGTG 775647 Query 123775 --TC----GAAAACGGCGCTTTTAATTTCCAAACGCTCAA-ACGCATAACAAAAACTGTA 123827 || ||| | | | | | | ||| | | ||||| || |||| || Sbjct 775648 GATCCAGTGAAGAAG--ACCTATGACTTCGACAAACTCAAGACAGTCGTCAAA----GTT 775701 Query 123828 GTAA--AG-AATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGT 123884 || | || ||| | ||| | ||||| || |||| ||||| | ||||| || | Sbjct 775702 GTCACCAGAAATCTCGACAGGGTCATCGACGTCAATTACTATCCAGTTGAGGAGGCAAGA 775761 Query 123885 TTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTT 123944 | || || ||| |||| | || | ||| | || |||| || |||| || || || Sbjct 775762 GTCTCCAACATGAGACACCGTCCCATGGGAATTGGAGTTCAGGGTCTGGCAGATGCATTC 775821 Query 123945 GTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCC 124004 || || |||| || | ||| || || || || || || || | || || | Sbjct 775822 CTACTGATGCGTTATCCATTCGACAGTGATGAGGCCCAGAAACTCAACATCCAGATCTTC 775881 Query 124005 GAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCG 124064 || || | || || || || ||||||| ||| ||||| || || | || | Sbjct 775882 GAGACCCTCTACTATGGTGCCCTGGAGGCATCCTGTGAACTCGCCCAAGAGAAGGGTACT 775941 Query 124065 TACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAAT 124124 ||||| | ||| ||| || | |||| || || | ||||||||||||||| | Sbjct 775942 TACGAGACGTACAAAGGCTCGCCAGTCAGCCAGGGCATCCTCCAGTACGACATGTGGGGT 776001 Query 124125 GCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACG----CATATCGACGCA 124180 | ||||||||||| | ||||||||| || | || ||| | ||||| || Sbjct 776002 GTCACACCGACAAACCTCTGGGACTGG-GC---TAAACTCAAGGAGAAAATATCTCAACA 776057 Query 124181 CGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTT 124240 ||| | | ||||| ||| | |||| ||||| || ||| | || || || || | Sbjct 776058 CGGGGTCAGGAACTCTCTGCTACTGGCACCAATGCCAACAGCATCAACAGCCCAGATCCT 776117 Query 124241 AGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGC 124300 || |||||||| || ||||||| | ||| | ||| | ||| | || ||| | | Sbjct 776118 GGGTAACAACGAGGCCATCGAGCCCTACACCAGCAACATCTACTCCAGGCGTGTGCTGTC 776177 Query 124301 CGGCGATTTTCAAGTGATAAATCATCATTTGGTG 124334 || || ||||| || | |||| ||| || || Sbjct 776178 TGGTGAATTTCAGGTCGTCAATCCCCATCTGCTG 776211 >seq10 Length=2352850 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| || || | | || ||||| || || || || || |||||||| ||||| Sbjct 821032 ATTCCTCCTCGAAGACGAAGAACAAGATGGAGAGTGGACTCTTTCTGGATATTGTAATCA 820973 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | ||| ||||||||||| || ||| | ||||| || |||||||| || Sbjct 820972 GAGAGTGTTCTCCCATCCTCCAATTGTTTACCAGCGAAGATCAAACGCTGCTGGTCTGGG 820913 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || ||||| || || || || ||||| ||| | ||||| || | ||| Sbjct 820912 GGAATTCCCTCTTTGTCCTGGATCTTGGCTTTGACATTTTCAATAGTGTCAGAGGCCTCT 820853 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || | || || || || | || |||||||| || ||||| Sbjct 820852 ACTTCCAGTGTGATGGTCTTCCCAGTCAATGTCTTTACAAAGATCTGCAT 820803 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| || || | | || ||||| || || || || ||||| || || || || Sbjct 820120 ATTCCTCCTCGAAGACGAAGAACGAGATGGAGGGTGGACTCTTTTTGAATGTTGTAGTCT 820061 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | || ||||||||||| || ||| | ||||| || || || || || Sbjct 820060 GAAAGAGTTCTTCCGTCCTCCAATTGTTTACCAGCGAAGATCAAACGCTGTTGATCTGGT 820001 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || |||||||||||||||||||| ||| | ||| | ||||| || | ||| Sbjct 820000 GGGATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTGTCAGATGCTTCG 819941 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || | |||||||| || | || || |||||||| ||||| Sbjct 819940 ACTTCCAGGGTGATGGTTTTGCCAGTCAATGTCTTAACAAAAATCTGCAT 819891 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 ||||| || |||||||| ||||| || || || || || | ||| ||||||||| Sbjct 820777 TGCAGAGTGGATTCCTTCTGGATGTTGTAGTCTGAGAGAGTCCTGCCATCTTCCAATTGT 820718 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | || | ||||| ||||| || ||||| || |||||||| || || || Sbjct 820717 TTACCAGCGAAGATGAGACGTTGTTGGTCTGGAGGAATTCCCTCTTTATCCTGGATCTTC 820658 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| ||| | ||||| || | ||| |||||||| || | || ||||| || Sbjct 820657 GCCTTGACGTTTTCAATTGTGTCAGAGGCCTCTACTTCGAGTGTGATGGTCTTGCCAGTC 820598 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 ||||| || |||||||| ||||| Sbjct 820597 AGAGTCTTGACAAAAATCTGCAT 820575 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || || || || || || || || || || ||||||||||| Sbjct 818980 ATGCCACCTCGAAGACGCAGGACAAGGTGAAGGGTGGACTCTTTCTGAATATTATAATCA 818921 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| | ||| || | || || || ||| | |||| ||||||||||| || Sbjct 818920 GAAAGGGTTCTGCCATCCTCGAGCTGCTTACCAGCGAAGATCAGACGTTGCTGGTCTGGA 818861 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || ||||| || || || || ||||| ||| | ||||| |||| ||| Sbjct 818860 GGGATTCCCTCTTTGTCCTGGATCTTGGCTTTGACATTTTCAATTGTGTCAGAAGCCTCA 818801 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | |||| || ||||| || | ||||| || || || ||||| Sbjct 818800 ACCTCCAACGTAATGGTCTTGCCAGTCAAGGTTTTCACGAAGATCTGCAT 818751 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 ||||| || ||||||||||| || || || || || |||| ||| ||||| || Sbjct 819865 TGCAGAGTGGATTCCTTTTGAATGTTGTAGTCTGAGAGGGTTCGGCCATCTTCCAACTGC 819806 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | |||| ||||||||||| || || || || ||||| || || || || Sbjct 819805 TTACCAGCGAAGATCAGACGTTGCTGGTCTGGAGGGATTCCCTCTTTGTCCTGGATCTTG 819746 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||||| ||| | ||||| || | |||||| || || || | || || || || Sbjct 819745 GCTTTGACATTTTCAATTGTGTCAGAGGCCTCGACCTCCAGGGTGATGGTCTTTCCAGTC 819686 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 | || || || || || ||||| Sbjct 819685 AACGTCTTCACGAAGATCTGCAT 819663 >seq676 Length=265522 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||| ||||| || ||||| | || | || ||||||||| Sbjct 178352 TGAAGAGTAGATTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGACCGTCTTCCAATTGT 178411 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| ||| | |||| || |||||||| || ||||| || || ||||| || || ||| Sbjct 178412 TTTCCAGCGAAGATCAGTCTCTGCTGGTCTGGGGGAATTCCCTCCTTATCCTGGATCTTT 178471 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 || | || | || | ||| || || | |||||| ||||| || | || ||||| || Sbjct 178472 GCCTTCA-CGTTCTCGATGGTATCAGAGGCCTCGACCTCGAGGGTGATGGTCTTGCCCGT 178530 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || || || ||||| Sbjct 178531 CAGCGTTTTCACGAATATCTGCAT 178554 >seq29 Length=2726036 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| || ||||||||||| ||| | ||||| | |||||||| || |||||||| || || Sbjct 1034204 ATCCTCTAATTGTTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGAGGAATGCCCTCCTT 1034145 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||| ||||| || ||||| ||| | || || |||| ||| || || || || | Sbjct 1034144 ATCCTGAATCTTGGCTTTGACATTTTCGATCGTATCAGAAGCCTCAACCTCAAGGGTGAT 1034085 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | || || || ||||| ||||| Sbjct 1034084 GGTCTTCCCCGTCAATGTCTTGACGAAAATCTGCAT 1034049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451980780641280