Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_013055.1 Length=39896 Score E Sequences producing significant alignments: (Bits) Value seq2969 205 2e-48 seq2694 174 4e-39 seq2874 143 7e-30 seq2577 120 8e-23 >seq2969 Length=1929 Score = 205 bits (226), Expect = 2e-48 Identities = 382/560 (68%), Gaps = 6/560 (1%) Strand=Plus/Plus Query 35327 CCGATTATTCCGTGGATCGGCGGCAAGCGGCGCCTTGCAGACCATCTCATTCCGCGCTTT 35386 ||||| | || ||||| ||||| || ||||| || ||| | || | | |||| ||| Sbjct 188 CCGATAGTGCCCTGGATAGGCGGTAAACGGCGGCTGGCAAAACAGATTTTACCGCACTTC 247 Query 35387 CCGGCGCACGACTGCTACGTTGAAGTGTTCGCGGGCGGCGCTGCGTTGTATTTCATGCGG 35446 |||||||| ||||||||| ||| ||| |||| || ||| | | || ||| | Sbjct 248 CCGGCGCATATCTGCTACGTGGAACCGTTTTGTGGCGCGGCGGCGCTCTTCTTTATGAAG 307 Query 35447 CCGCCGGCAAAGGTCGAGGTGATCAACGACGTTAACGGCGAACTGATCAACCTGTATCGC 35506 | || |||| || ||||| ||||| | |||||||||||| |||| || ||||| Sbjct 308 TCACCCAGCAAGGCGGAAGTGATTAACGATATCAACGGCGAACTGGTCAATCTCTATCGG 367 Query 35507 GTCGTTCAGCATCACCTCGAGGAATTCGTGCGGCAGTTCAAATGGGCGCTCACCAGTCGG 35566 || | | || || || || ||||| | || ||||| ||||||||||| ||| || Sbjct 368 GTGCTGAAACACCATCTGGAAGAATTTATACGCCAGTTTAAATGGGCGCTGGTCAGCAGG 427 Query 35567 CAGGTGTTCGAGTGGCTGAAGCAGACGGCGCCGGAAACGCTCACCGACATCCAGCGTGCG 35626 | ||| | ||| |||| || || | || || | ||||| |||||||| ||| Sbjct 428 GCGATGTATCAATGGTTGAAAATCACCCCGACCGAGACCTTAACCGATATCCAGCGCGCG 487 Query 35627 GCGCGGTTCTACTATCTGCAGAAAAACTGCTTTGGCGGGATTGTCCACGGGCAGACGTTC 35686 || || ||||| || ||||| ||| | || ||||| | || || ||| || || Sbjct 488 GCCCGTTTCTATTACCTGCAAAAACAGGCGTTCGGCGGCAAGGTGGCCGAGCACACCTTT 547 Query 35687 GGC---ACGGCTACCACTGCGCCGCCGGGTCTGAACTTGCTGCGGATCGAGGAAGAATTA 35743 ||| || | ||||||||||| | | |||||| || |||| || || |||||| | Sbjct 548 GGCGTGACCACCACCACTGCGCCAC---GCCTGAACCTGTTGCGCATGGAAGAAGAACTG 604 Query 35744 TCCGCGGCGCACTTGCGCCTCGCGAGCGCATATATCGAGCGTCTGGACTGGGCGGATTGC 35803 || ||| || |||| || | || | | || || | || |||||||| ||| Sbjct 605 TCGTTGGCTCATCTGCGACTATCACGCACCTCCATTGAACAACTTGACTGGGCAAGCTGC 664 Query 35804 ATCGATCGCTATGACCGGCCGCACACGTTGTTCTATCTCGATCCGCCGTATTTCGAGACG 35863 || | ||||||||||| ||||||||| ||||||| ||| |||||||||| | |||| Sbjct 665 ATTGCCCGCTATGACCGTCCGCACACGCTGTTCTACTGCGACCCGCCGTATTGGGGGACG 724 Query 35864 CGCGGCTACGGTGTCGATTT 35883 || || || || ||||| Sbjct 725 GAAGGTTATGGGGTGGATTT 744 >seq2694 Length=15341 Score = 174 bits (192), Expect = 4e-39 Identities = 375/558 (67%), Gaps = 2/558 (0%) Strand=Plus/Minus Query 35327 CCGATTATTCCGTGGATCGGCGGCAAGCGGCGCCTTGCAGACCATCTCATTCCGCGCTTT 35386 ||||| | || ||||| ||||| || ||||| || ||| | || | | |||||||| Sbjct 2688 CCGATACTGCCCTGGATAGGCGGTAAACGGCGGCTGGCAAAACAGATTTTACCGCGCTTC 2629 Query 35387 CCGGCGCACGACTGCTACGTTGAAGTGTTCGCGGGCGGCGCTGCGTTGTATTTCATGCGG 35446 || |||| ||||||||| || || |||| || ||| | | ||| ||| | Sbjct 2628 CCTACGCATACCTGCTACGTGGAGCCATTTTGTGGCGCGGCGGCGCTCTTTTTTATGAAG 2569 Query 35447 CCGCCG-GCAAAGGTCGAGGTGATCAACGACGTTAACGGCGAACTGATCAACCTGTATCG 35505 | ||| |||||| |||||||| ||||| | |||||||| ||| |||| || ||||| Sbjct 2568 TCACCGAGCAAAGCG-GAGGTGATTAACGATATCAACGGCGAGCTGGTCAATCTTTATCG 2510 Query 35506 CGTCGTTCAGCATCACCTCGAGGAATTCGTGCGGCAGTTCAAATGGGCGCTCACCAGTCG 35565 || | | || || || || || || |||| ||||| ||||||||||| ||| || Sbjct 2509 GGTGTTGAAACACCATCTGGAAGAGTTTATGCGCCAGTTTAAATGGGCGCTGGTCAGCCG 2450 Query 35566 GCAGGTGTTCGAGTGGCTGAAGCAGACGGCGCCGGAAACGCTCACCGACATCCAGCGTGC 35625 | | ||| | ||| | || ||| || | || || || ||||| |||||||| || Sbjct 2449 GGCGATGTATCAATGGTTAAACATCACGCCGACCGAGACCCTAACCGATATCCAGCGCGC 2390 Query 35626 GGCGCGGTTCTACTATCTGCAGAAAAACTGCTTTGGCGGGATTGTCCACGGGCAGACGTT 35685 || || ||||| || ||||| ||| | || ||||| | || | ||| || || Sbjct 2389 AGCACGTTTCTATTACCTGCAAAAACAGGCGTTCGGCGGCAAGGTGGCGGAGCACACCTT 2330 Query 35686 CGGCACGGCTACCACTGCGCCGCCGGGTCTGAACTTGCTGCGGATCGAGGAAGAATTATC 35745 ||| | | || || || |||| | |||||| ||||||| || || ||||| ||||| Sbjct 2329 TGGCGTGACCACTACAACGGGGCCGCGCCTGAACCTGCTGCGCATGGAAGAAGAGTTATC 2270 Query 35746 CGCGGCGCACTTGCGCCTCGCGAGCGCATATATCGAGCGTCTGGACTGGGCGGATTGCAT 35805 ||||| |||| | | || | || || | ||||| ||||| || || Sbjct 2269 GCTCGCGCATCTGCGATTATCACGCACCACCATTGAACACCTGGATTGGGCCAGCTGTAT 2210 Query 35806 CGATCGCTATGACCGGCCGCACACGTTGTTCTATCTCGATCCGCCGTATTTCGAGACGCG 35865 | || |||||||| ||||||||| |||| || ||| || ||||| | | || Sbjct 2209 TGCCCGTTATGACCGTCCGCACACGCTGTTTTACTGCGACCCACCGTACTGGGGAACCGA 2150 Query 35866 CGGCTACGGTGTCGATTT 35883 ||||| || |||||||| Sbjct 2149 GGGCTATGGCGTCGATTT 2132 >seq2874 Length=8148 Score = 143 bits (158), Expect = 7e-30 Identities = 359/540 (66%), Gaps = 8/540 (1%) Strand=Plus/Plus Query 35336 CCGTGGATCGGCGGCAAGCGGCGCCTTGCAGACCATCTCATTCCGCGCTTTCCGGCGCAC 35395 || ||| | || || ||||| || || || | | | | | || ||||||| | |||| Sbjct 2435 CCTTGGGTGGGAGGGAAGCGTCGGCTGGCTAAACGTATTCTATCGTGCTTTCCTGAGCAC 2494 Query 35396 GACTGCTACGTTGAAGTGTTCGCGGGCGGCGCTGCGTTGTATTTCATGCGGCCGCCGGCA 35455 | |||||||||||| ||| || || |||||| ||| ||||| | || | Sbjct 2495 AAATGCTACGTTGAACCATTCTGTGGGGGAGCTGCGCTGTTTTTCAGCAAGGAACCATCT 2554 Query 35456 AAGGTCGAGGTGATCAACGACGTTAACGGCGAACTGATCAACCTGTATCGCGTCGTTCAG 35515 | | ||| ||| | ||||| | || ||||| |||| ||||| |||| || ||| | Sbjct 2555 ACAGCCGAAGTGCTGAACGATATCAATGGCGATTTGATAAACCTCTATCAGGTGGTTAAA 2614 Query 35516 CATCACCTCGAGGAATTCGTGCGGCAGTTCAAATGGGCGCTCACCAGTCGGCAGGTGTTC 35575 || || | |||||||| || || || ||||| ||||| | | |||| ||||| |||| Sbjct 2615 CACCATTTGGAGGAATTTGTACGTCAATTCAAGTGGGCCTTGAGCAGTAGGCAGCTGTTT 2674 Query 35576 GAGTGGCTGAAGCAGACGGCGCCGGAAACGCTCACCGACATCCAGCGTGCGGCGCGGTTC 35635 || ||||| || | || | ||| ||| ||| || || |||||||| || || ||||| Sbjct 2675 GATTGGCTAAAAGAAACACCTCCGCAAATGCTAACTGATATCCAGCGAGCCGCCCGGTTT 2734 Query 35636 TACTATCTGCAGAAAAACTGCTTTGGCGGGATTGTCCACGGGCAGACGTTCGGCACGGCT 35695 |||||||| ||| | ||||| || | || ||| || | || || || || Sbjct 2735 TACTATCTTCAGCAGCTTACATTTGGTGGAAAAGTGAGCGGACAAAGCTTTGGTAC--CT 2792 Query 35696 ACCACTGCGC---CGCCGGGTCTGAACTTGCTGCGGATCGAGGAAGAATTATCCGCGGCG 35752 || ||| || | | || ||||| | || | ||||| ||| | |||| ||| Sbjct 2793 -CCGCTGTGCGATCACAGGCATTGAACCTCCTAAGAATCGAAGAACAGCTATCACAGGCC 2851 Query 35753 CACTTGCGCCTCGC-GAGCGCATATATCGAGCGTCTGGACTGGGCGGATTGCATCGATCG 35811 ||| |||| | | ||| ||| || |||| ||| | ||| || ||| || || Sbjct 2852 CACCTGCGTTTATCTGAG-GCAACCATAGAGCATCTTGGGTGGCAGGCTTGTATTGAAAA 2910 Query 35812 CTATGACCGGCCGCACACGTTGTTCTATCTCGATCCGCCGTATTTCGAGACGCGCGGCTA 35871 ||||| |||| ||||| || ||||| || |||||||| || | || || | ||||| Sbjct 2911 ATATGATAGGCCACACACATTATTCTACCTTGATCCGCCTTACTGGGAAACTCAAGGCTA 2970 >seq2577 Length=10119 Score = 120 bits (132), Expect = 8e-23 Identities = 224/327 (69%), Gaps = 3/327 (1%) Strand=Plus/Minus Query 8788 GACTACCTGCAGCTGATGTCGGGTGACGGCGGCGGATCTGAAATGCGGGCCACCGAGGTC 8847 ||||||||||| |||||| |||||| | || | || || | || || ||| || Sbjct 6227 GACTACCTGCAACTGATG-CGGGTGCCCGC--CCTTTCGGATAACCGAACCCTTGAGATC 6171 Query 8848 GCCGAAATATCGCGCGCACTCAAACAAATTGCGAAGGAACTCGACGTTCCGATCATCGCG 8907 |||||||| || || | |||||| | | || || ||| | | || || | |||| Sbjct 6170 GCCGAAATTTCCCGTTCTCTCAAAGCATTGGCAAAAGAATTGCAAGTGCCTGTGGTCGCA 6111 Query 8908 CTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCATGTCCGAT 8967 || || |||||||| || | || ||| | || | |||| || || |||| ||||| Sbjct 6110 CTCTCTCAGCTTAACCGTAGTCTGGAGCAGCGAGCGGACAAACGCCCGGTCAACTCCGAC 6051 Query 8968 CTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTATCTACCGCGAT 9027 ||||| || || || | |||||||||||||| ||| |||| | |||||||| || ||| Sbjct 6050 CTGCGTGAATCCGGATCTATCGAGCAGGATGCTGACCTGATTATGTTTATCTATCGTGAT 5991 Query 9028 GAGGTCTATAACCCCGACAGCGCAGATCGCGGTACGGCCGAAATCATCATTGCGAAGCAG 9087 ||||| ||| | |||||| || | || || || ||| | | ||| ||| Sbjct 5990 GAGGTTTATCATGAAAACAGCGATTTGAAAGGCATTGCTGAGATTATCTTGGGGAAACAG 5931 Query 9088 CGAAACGGGCCGATTGGCACCGTACGG 9114 || ||||| || || || ||||| ||| Sbjct 5930 CGTAACGGCCCTATCGGTACCGTTCGG 5904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127539590051328