Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq14 196 6e-45 seq3099 109 7e-19 seq320 84.2 3e-11 >seq14 Length=2234412 Score = 196 bits (216), Expect = 6e-45 Identities = 809/1263 (64%), Gaps = 36/1263 (3%) Strand=Plus/Minus Query 115560 GAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCC-AGGCATACATATGCATTGAGGACA 115618 ||| ||||||||||| ||||| | || |||||| | | | | |||||| || | | Sbjct 232949 GAGATAGTACATCCCAGTCTTCAATCCA-GCTTCCCAACCGAAGAAATGCATGGACGTGA 232891 Query 115619 ACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGC 115678 ||| | |||||||| ||||| | || | ||||| |||||||| || Sbjct 232890 GCTTCTCAGGGGTTGGACTGGCCATGTGAACATTGGTCGACTGGGACTGATCGATAAAAG 232831 Query 115679 GTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTCCCACACAGTTC 115735 || ||||| || ||||| | ||| | || ||| | || ||||| || |||| Sbjct 232830 CCCCTCGATCAGCAGCCATTT---TCAGGATCATCCTCTGGGGAATCTCCCAGACTGTTC 232774 Query 115736 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCT 115795 |||| || ||| || || |||| || | | ||||| | ||||| || ||| | Sbjct 232773 TGTACAGTGCCTTGATGTCTGCTGGTATTTTCTCGATACTCTGGATCGACCCATTGTTCG 232714 Query 115796 TGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGA 115855 | || |||| |||||| || | ||||||| | | |||| |||| || || Sbjct 232713 CTATTATCAGATTCTTCATGTCGTCGTCCCAGAGATCGCGTTCAGTGAGGTCCTTCAGGA 232654 Query 115856 GGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCG 115915 | || |||||| || || ||||| | || ||| || ||||||||| | | Sbjct 232653 GATGGGGATTGACGACCTGGAATTCACCAGACAGCACGCGCCTGGAGTAGATGTTGCTGG 232594 Query 115916 TGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGG 115975 |||| ||||| | | ||| |||||||||| ||| |||||||| || ||||| ||||| | Sbjct 232593 TGTAGGGCTCGATGGCCTCGTTGTTACCCAGGATCTGGGCTGTTGATGCTGTTGGCATTG 232534 Query 115976 GTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTT-------CCTTGAGG 116028 |||||| || || ||| | || |||| | || | | ||||||| Sbjct 232533 GTGCCAGTAGCAGAGAGTTCCTGA-------CCCCGTGTTGAGATATTTTCTCCTTGAGT 232481 Query 116029 GCGTCCCAGTCGTAGTTGAGCTTTGTC----TCCCCCTCCCACATATCAAACTGGAGGAT 116084 ||||||| || || |||||| | | | ||||||| || |||||||||| Sbjct 232480 TTAGCCCAGTCCCAG---AGGTTTGTCGGTGTGACAC-CCCACATGTCGTACTGGAGGAT 232425 Query 116085 ACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTC 116144 || ||| ||||||| || | | ||||| || | |||| | | || | ||| Sbjct 232424 GCCCTGGCTGACTGGCGAGCCTTTGTACGTCTCGTAAGTACCCTTCTCTTGGGCGAGTTC 232365 Query 116145 GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTT 116204 || ||||| ||||| | | || | ||||| || || | || | | || Sbjct 232364 ACAGGATGCCTCCAGGGCACCATAGTAGAGGGTCTCGAAGATCTGGATGTTGAGTTTCTG 232305 Query 116205 GGCCTCGTCGGAATCAAACGCGAGACGGCA-CAAAATAAATACATCCGCGAGACCTTGGA 116263 |||||| || || || | || | ||| || | ||| |||| || ||||| || | Sbjct 232304 GGCCTCATCACTGTCGAATG-GATAACGCATCAGTAGGAATGCATCTGCCAGACCCTGAA 232246 Query 116264 CACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAA 116323 | || | || || || || |||||||| || || || || ||| || ||||| Sbjct 232245 CTCCAATTCCCATGGGACGGTGTCTCATGTTGGAGACTCTTGCCTCCTCAACTGGATAGT 232186 Query 116324 AATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATT-TCATGAAGC 116382 |||| ||||| ||||| | |||||| |||||||||| || || | || ||| | Sbjct 232185 AATTGACGTCGATGACCCTGTCGAGATTTCTGGTGACAACTTTGACGACTGTCTTGA-GT 232127 Query 116383 TTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCC 116442 || ||| | ||| | | || || || ||| || | | || || || ||| Sbjct 232126 TTGTCGAAGTCATAGGTCTTCTTCACTGGATCCACAAACATGTTGACTGCTATCGATGCC 232067 Query 116443 AGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTT 116502 | ||| || |||| ||||| | |||||| | || || || ||||| || Sbjct 232066 AAATTGCAGACAGCAACTTCATCGGGGCTCGAGTACTCAACGATCTCGGTGCACAAGTTG 232007 Query 116503 GAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAG 116562 | || || || || | |||||| ||||| || || |||| || ||||||||||| Sbjct 232006 CTGCATTTTATTGTTCCAAGGTTCTTCTGATTGGATTTCCTGTTGCAGGCATCCTTGTAC 231947 Query 116563 AGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATCGGCG 116622 ||||| || || || || ||||| ||| ||| | ||||| || |||| | || | Sbjct 231946 AGCATGTAGGGAGTTCCAGTCTCAACTTGTGACATTAGAATTGCTGTCCACAGCTCACGG 231887 Query 116623 GCTGGCACAGTGGCG-TTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAA 116681 |||||||| || || ||| || |||||||||||||||||||||| || || || Sbjct 231886 GCTGGCAC-TTGACGCTTGTAACGAGCCTCCTCCTCGTACTTTGTGTACAGCTTATCGAA 231828 Query 116682 CTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTG 116741 || |||||| || || |||| ||||| || | || || | | | ||| | Sbjct 231827 TTCCTCACCCCAAGTGTCACAGAGGCCTGGACACTCGTGGGGGCACATCAAACTCCAGGG 231768 Query 116742 ACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATC 116801 ||| | ||| || || |||||||| | || || ||||| || || |||| || || Sbjct 231767 ACCGTCTGCCTTGACACGTTTCATGAACAAATCGGGTATCCACAGGGCGTAGAACAGCTC 231708 Query 116802 CCG 116804 || Sbjct 231707 ACG 231705 Score = 167 bits (184), Expect = 3e-36 Identities = 592/916 (65%), Gaps = 28/916 (3%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| ||||| | | ||| |||||||||| ||| |||||||| || Sbjct 776159 TAGATGTTGCTGGTGTAGGGCTCGATGGCCTCGTTGTTACCCAGGATCTGGGCTGTTGAT 776100 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTT-- 116020 ||||| ||||| ||||||| || || ||| | || |||| | || | | Sbjct 776099 GCTGTTGGCATTGGTGCCAGTAGCAGAGAGTTCCTGA-------CCCCGTGTTGAGATAT 776047 Query 116021 -----CCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTC----TCCCCCTCCCACATAT 116071 ||||||| ||||||| || || |||||| | | | ||||||| | Sbjct 776046 TTTCTCCTTGAGTTTAGCCCAGTCCCAG---AGGTTTGTCGGTGTGACAC-CCCACATGT 775991 Query 116072 CAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAA 116131 | |||||||||| || ||| ||||||| || | | ||||| || | |||| Sbjct 775990 CGTACTGGAGGATGCCCTGGCTGACTGGCGAGCCTTTGTACGTCTCGTAAGTACCCTTCT 775931 Query 116132 CCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAG 116191 | | || | ||| || ||||| ||||| | | || | ||||| || || | Sbjct 775930 CTTGGGCGAGTTCACAGGATGCCTCCAGGGCACCATAGTAGAGGGTCTCGAAGATCTGGA 775871 Query 116192 CATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCA-CAAAATAAATACATCC 116250 || | | || |||||| || || || | || | ||| || | ||| |||| Sbjct 775870 TGTTGAGTTTCTGGGCCTCATCACTGTCGAATG-GATAACGCATCAGTAGGAATGCATCT 775812 Query 116251 GCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTC 116310 || ||||| || || || | || || || || |||||||| || || || || | Sbjct 775811 GCCAGACCCTGAACTCCAATTCCCATGGGACGGTGTCTCATGTTGGAGACTCTTGCCTCC 775752 Query 116311 TCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTG 116370 || || ||||| |||| ||||| ||||| | |||||| |||||||||| || | Sbjct 775751 TCAACTGGATAGTAATTGACGTCGATGACCCTGTCGAGATTTCTGGTGACAACTTTGACG 775692 Query 116371 ATT-TCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAG 116429 | | || ||| | || ||| | ||| | | || || || ||| || | | Sbjct 775691 ACTGTCTTGA-GTTTGTCGAAGTCATAGGTCTTCTTCACTGGATCCACAAACATGTTGAC 775633 Query 116430 GGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTC 116489 || || || |||| ||| || |||| ||||| | |||||| | || || Sbjct 775632 TGCTATCGATGCCAAATTGCAGACAGCAACTTCATCGGGGCTCGAGTACTCAACGATCTC 775573 Query 116490 CGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACA 116549 || ||||| || | || || || || | |||||| ||||| || || |||| || Sbjct 775572 GGTGCACAAGTTGCTGCATTTTATTGTTCCAAGGTTCTTCTGATTGGATTTCCTGTTGCA 775513 Query 116550 CGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTT 116609 ||||||||||| ||||| || || || || ||||| ||| ||| | ||||| || | Sbjct 775512 GGCATCCTTGTACAGCATGTAGGGAGTTCCAGTCTCAACTTGTGACATTAGAATTGCTGT 775453 Query 116610 CCATACATCGGCGGCTGGCACAGTGGCG-TTGGCTCGCCCCTCCTCCTCGTACTTTGTGT 116668 ||| | || ||||||||| || || ||| || ||||||||||||||||||||| Sbjct 775452 CCACAGCTCCCGGGCTGGCAC-TTGACGCTTGTAACGAGCCTCCTCCTCGTACTTTGTGT 775394 Query 116669 AGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGA 116728 | || || || || |||||| || || |||| ||||| || | || || | Sbjct 775393 ACAGCTTATCGAATTCCTCACCCCAAGTGTCACAGAGGCCTGGACACTCGTGGGGGCACA 775334 Query 116729 AGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCG 116788 ||| ||| |||| | || || || |||||||| | || || ||||| || | Sbjct 775333 TCAGACTCCAGGGACCGTCTGCCAGGACACGTTTCATGAACAAATCGGGTATCCACAGGG 775274 Query 116789 CCGAGAAGAGATCCCG 116804 | |||| || || || Sbjct 775273 CGTAGAATAGCTCACG 775258 >seq3099 Length=8203 Score = 109 bits (120), Expect = 7e-19 Identities = 254/376 (68%), Gaps = 14/376 (4%) Strand=Plus/Minus Query 12698 CTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGT 12757 || ||| ||||| || || || || || | || |||||| | ||| ||||| || Sbjct 7056 CTGACGGTCAAAACGGCCCGGACGCAGCAATGCAGGGTCAAGCACGTCAGGACGGTTGGT 6997 Query 12758 CGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTG 12817 || || || || | ||||| | | || || |||||||||||| || | || Sbjct 6996 GGCGGCAATCACGATAATGCCTTCATTGCCTTCAAAACCATCCATCTCAACCAGCATCTG 6937 Query 12818 ATTGATGGTTTGTTCACGTTCATCAT-TCGCGGGCATACCACCCGCACTGCGTTGCTTAC 12876 || | |||||||||||||||||||| | || | |||||||| ||||| || Sbjct 6936 GTTCAGGGTTTGTTCACGTTCATCATGACCACCGCCCA-GACCCGCACCACGTTGGCGAC 6878 Query 12877 CGACGGCGTCAATTTCGTCAATGAAAACGATACA-----CGGTTGATTTTCACGGGCAAC 12931 ||||||| || ||||| |||||||| | |||||| ||| | ||||| | || Sbjct 6877 CGACGGCATCGATTTCATCAATGAAGATGATACAAGGCGCGGCT-TTTTTCGCCTGC--- 6822 Query 12932 TTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGC 12991 || || || || ||||| | |||||||||||||| ||||| || ||||| | | Sbjct 6821 -TCGAACATGTCACGCACACGAGATGCACCGACACCCACGAACATTTCAACAAAGTCAGA 6763 Query 12992 GGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGG 13050 ||||| || | || ||| || || || | |||||| || || || ||| || |||| Sbjct 6762 ACCGGAA-ATGGTGAAGAATGGCACCTTCGCTTCACCGGCAATCGCCTTGGCAAGCAGGG 6704 Query 13051 TCTTCCCCGTCCCTGG 13066 | || || || || || Sbjct 6703 TTTTACCTGTTCCCGG 6688 >seq320 Length=265502 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 127541 TCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTC 127600 ||||| | |||||| || ||||| ||| ||||| |||||||| || ||||| ||| Sbjct 15471 TCGTCCCTGGAGATAAGCTCATTACTGAAAGTGAGACCAGGCATGAGTCCACGCTTTTTC 15412 Query 127601 AACCAGAAAATCGCA-CAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGC 127659 |||||||| || ||| | ||| | ||||||||||| || ||||| ||| ||||| || Sbjct 15411 AACCAGAAGATGGCAGCGAAACTA-CCAGAGAAGAAAATTCCCTCGACAGCGGCGAAGGC 15353 Query 127660 AAATAGACGCTCGGCAAA 127677 | ||| | ||||| || Sbjct 15352 GATTAGTCTTTCGGCGAA 15335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613476770042880