Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_013599.1 Length=36674 Score E Sequences producing significant alignments: (Bits) Value seq2759 275 1e-69 seq2728 260 3e-65 >seq2759 Length=1061 Score = 275 bits (304), Expect = 1e-69 Identities = 381/531 (72%), Gaps = 3/531 (1%) Strand=Plus/Plus Query 1871 TTTCACCGCTTCCAGCAGCAGGTCCTGTACTTCGCGTTTAGATTCACGGCGGGCCATCAC 1930 ||||| |||||| ||||| | |||||| ||||||||||| || || || | ||| || Sbjct 304 TTTCATCGCTTCGAGCAGGATGTCCTGCACTTCGCGTTTTGAATCGCGCCTCTGCATTAC 363 Query 1931 CAATTCATCCACCGTGCCCGCCGCCACGATGTGGTGAATAAATACAGGCCGCTGATGTCC 1990 || ||| || || || | || || | ||||||||||||||||| || || | ||| || Sbjct 364 CAGTTCGTCTACGGTATCGGCGGCGATAATGTGGTGAATAAATACCGGGCGGTTATGCCC 423 Query 1991 GGCTTGCGCCTGACGTGTCGGCCCAATGCGTTCGATGATCTGCTGGTACTGCTCCAGGTC 2050 || || ||| |||||||| || || ||||||||||| || |||||||| |||| || Sbjct 424 TGCCTGTATCTGGCGTGTCGGGCCTATACGTTCGATGATTTGTTGGTACTGTTCCAAATC 483 Query 2051 CCACCAGTGGCCGAAGAAGGCCAAAATATTTCCGCCGTCTTGCAGATTTAAGCCATGACC 2110 ||||||||| ||| || ||| ||||||||||||||| |||| ||| | ||| || || Sbjct 484 CCACCAGTGCGAGAAAAACACCAGAATATTTCCGCCGTCCTGCATATTCAGGCCGTGGCC 543 Query 2111 GGCACTGGCCGGATGGGCAAATAGCACGGGAATGTTCCCCGCATTCCAATCGCGGATCGT 2170 || ||||| || || ||||| || || || || || || || ||||| ||||| | ||| Sbjct 544 TGCGCTGGCTGGGTGAGCAAAAAGGACAGGTATTTTTCCGGCGTTCCAGTCGCGCAGCGT 603 Query 2171 GTCGGGGTGTTTGTCCAAAGCACGCCCCTTGGGGAAGGCACGCTGCAACCGTGCGACATC 2230 | || | || | | ||||| || ||||| | | || || || | ||| Sbjct 604 CTGCGGATCGGAATCAAGCGGTTTACCCTTTGGAAAGGCTTTCAGTAAACGGGCTAAATC 663 Query 2231 ACTTTTAAAGTGATACGCCACCAACACCGGCATACCGGCGGCTTCTTCGATAATGTCGTG 2290 ||||||||||| || || |||| ||||||| ||||||||||| ||| |||| || Sbjct 664 GCTTTTAAAGTGGTAGGCAACCAGCACCGGCGCGCCGGCGGCTTCGGCGAGAATGCTGTC 723 Query 2291 CAGCGCCTCTAATTTCGCATCGTGCACGACTTCCCAGGCCTGACGTGTGTCATCGGTGTA 2350 ||| |||| || ||||||||||| | || ||| | || | || | | ||||| || Sbjct 724 CAGTGCCTGTAGCTTCGCATCGTGGATTTCTGACCATG--TG-CCTGCGCCGTCGGTATA 780 Query 2351 CAGCGCACCATTGGCCAGTTGCAGGCATTTAATTGTCTTGCTGGCGGCGTT 2401 | || || |||| | ||||| ||||| | ||| || ||||||||| Sbjct 781 GATTGCGCCGCTGGCAATTTGCAAACATTTCACTGTTTTTGCGGCGGCGTT 831 >seq2728 Length=1005 Score = 260 bits (288), Expect = 3e-65 Identities = 359/502 (72%), Gaps = 14/502 (3%) Strand=Plus/Minus Query 1872 TTCACCGCTTCCAGCAGCAGGTCCTGTACTTCGCGTTTAGATTCACGGCGGGCCATCACC 1931 |||| ||||||||||| | |||||| ||||| ||||| || || || || ||||||| Sbjct 939 TTCATAGCTTCCAGCAGGATGTCCTGCACTTCTCGTTTTGAATCGCGCCGTTCCATCACA 880 Query 1932 AATTCATCCACCGTGCCCGCCGCCACGATGTGGTGAATAAATACAGGCCGCTGATGTCCG 1991 | ||| || || ||||| || || | ||||||||||||||||| || || | ||| || Sbjct 879 AGTTCGTCTACGGTGCCGGCGGCGATCATGTGGTGAATAAATACCGGGCGGTTATGCCCT 820 Query 1992 GCTTGCGCCTGACGTGTCGGCCCAATGCGTTCGATGATCTGCTGGTACTGCTCCAGGTCC 2051 || || ||| ||||||||||| || ||||||||||| || |||||||||||||| ||| Sbjct 819 GCCTGTATCTGGCGTGTCGGCCCTATACGTTCGATGATTTGTTGGTACTGCTCCAGATCC 760 Query 2052 CACCAGTGGCCGAAGAAGGCCAAAATATTTCCGCCGTCTTGCAGATTTAAGCCATGACCG 2111 |||||||| ||| || ||| ||||||||||| || |||| ||| | ||||| | Sbjct 759 CACCAGTGAGAGAAAAACACCAGGATATTTCCGCCATCCTGCATATTCAGACCATGGCTT 700 Query 2112 GCACTGGCCGGATGGGCAAATAGCACGGGAATGTTCCCCGCATTCCAATCGCGGATCGTG 2171 |||||||| |||||||| || | ||| || || || || || ||||||| ||| | ||| Sbjct 699 GCACTGGCAGGATGGGCGAACAACACCGGGATTTTTCCGGCGTTCCAATTGCGTAACGTC 640 Query 2172 TCGGGGTGTTTGTCCAAAGCACGCCCCTTGGGGAAGGCACGCTGCAACCGTGCGACATCA 2231 | |||| | || | || || |||||||| | || |||| Sbjct 639 TGTGGGTCGTCATCAAGGTGACAACCGCGCGGGAAGGCTTTCAATAA-CGTG-------- 589 Query 2232 CTTTTAAAGTGATACGCCACCAACACCGGCATACCGGCGGCTTCTTCGATAATGTCGTGC 2291 ||| ||||||| || |||| ||||||| ||||||||||| ||||||| | | Sbjct 588 --TTTCCAGTGATAGGCGACCAGCACCGGCGCGCCGGCGGCTTCGGTGATAATGCTATCC 531 Query 2292 AGCGCCTCTAATTTCGCATCGTGCACGACTTCCCAGGCCTGACGTGTGTCATCGGTGTAC 2351 ||||||| |||||| || ||||| | || ||||| || | |||| ||||| || Sbjct 530 AGCGCCTGTAATTTAGCTTCGTGGATTTCTGACCAGG---TACCTTTGTCGTCGGTATAG 474 Query 2352 AGCGCACCATTGGCCAGTTGCA 2373 | || || |||| | ||||| Sbjct 473 ATAGCGCCGCTGGCGATTTGCA 452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117229675877376