Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_014036.1 Length=174436 Score E Sequences producing significant alignments: (Bits) Value seq2351 253 2e-62 seq3532 170 2e-37 seq2333 140 4e-28 seq3176 136 4e-27 >seq2351 Length=10305 Score = 253 bits (280), Expect = 2e-62 Identities = 311/421 (74%), Gaps = 8/421 (2%) Strand=Plus/Plus Query 41097 CCGACTCCAATTATGGCGGGTGTACGTACTCCTACGCGCCAGTTCTCCAGTTGTGTAGTA 41156 || || || || ||| | || || ||||| || || || |||||| | || || | Sbjct 2589 CCAACGCCGATCATGTCCGGCGTGCGTACCCCAACCCGTCAGTTCAGCTCCTGCGTGTTG 2648 Query 41157 ATTGAATCGGGTGATTCTCTTGGTTCTCTTAACGCTGTAACCTC---TGCGATCGTGAAG 41213 ||||| | || || || | ||| ||||||| ||||| ||| |||||||| Sbjct 2649 ATTGAGTGCGGCGACAGCCTGGATTCCATTAACGCC---ACCTCCAGTGCTATCGTGAAA 2705 Query 41214 TATATTTCACAACGTGCTGGTATTGGGGTTAACGCGGGACATATTCGCGCAATGGGTTCT 41273 || ||||||| ||||| ||||| || ||||||| || | |||||| || ||||| Sbjct 2706 TACGTTTCACAGCGTGCCGGTATCGGCATTAACGCCGGTCGTATTCGTGCGCTGGGTAGC 2765 Query 41274 AAAATCCGTGGTGGTGAAGCTGTTCATACTGG-TGTGATTCCTTTCTGGAAACATATCCA 41332 || || ||||||||||| | |||||||| ||| |||||||||| |||||| |||| Sbjct 2766 CCGATTCGCGGTGGTGAAGCATTCCATACTGGCTGT-ATTCCTTTCTATAAACATTTCCA 2824 Query 41333 AACCGCTGTTAAATCCTGTTCACAGGGTGGCGTTCGTGGTGGTGCTGCAACACTGTATTA 41392 ||||| || |||||||| |||||||| || || || || || || ||||| ||| ||| Sbjct 2825 GACCGCAGTGAAATCCTGCTCACAGGGCGGTGTGCGCGGCGGAGCGGCAACGTTGTTTTA 2884 Query 41393 TCCTTTCTGGCATCTGGAAGTTGAAAACCTTCTGGTGTTGAAGAACAACAAAGGCGTAGA 41452 || | |||||||||||||| |||| ||| |||||| ||||||||||| ||||| || Sbjct 2885 CCCGCTGTGGCATCTGGAAGTGGAAAGCCTGCTGGTGCTGAAGAACAACCGTGGCGTGGA 2944 Query 41453 AGAAAACCGCGTTCGTCATCTTGATTACGGTGTACAGCTTAACCAGTTGATGTATAAACG 41512 || |||||||| ||||| || |||||||| || ||| | ||| || |||||||| | || Sbjct 2945 AGGCAACCGCGTGCGTCACCTCGATTACGGCGTGCAGTTGAACAAGCTGATGTATCAGCG 3004 Query 41513 C 41513 | Sbjct 3005 C 3005 Score = 118 bits (130), Expect = 1e-21 Identities = 255/379 (67%), Gaps = 8/379 (2%) Strand=Plus/Plus Query 42843 GTTGCACGTTATGAATCGCAGAAACACAAAGTTTTCGAAAGCCTGACGCAAAAACAACTT 42902 || || ||||| || ||| ||| | || | ||||| | |||| | ||||| || Sbjct 4415 GTAGCGCGTTACGATCAGCAAAAATATGAAATATTCGAGAAGCTGATAGAGAAACAGCTC 4474 Query 42903 TCTTTCTTCTGGCGTCCGGAAGAAGTCGATCTGTCTACTGACCGTATGCAGTATGCAAAA 42962 || || ||||||||||| ||||| || ||| ||||| || || || | ||| Sbjct 4475 TCCTTTTTCTGGCGTCCAGAAGAGGTGGATGTGTCTCGCGATCGCATCGACTATCAGGCG 4534 Query 42963 CTTCCTGAACATGAAAAAATCATTTTCGATTCTAACCTACAGTATCAAACCCTGTTAGAT 43022 || || ||||||||||| ||| ||| || || | || ||||| ||| | || Sbjct 4535 CTACCAGAACATGAAAAGCACATCTTCATCAGCAATCTGAAATACCAAACACTGCTGGAC 4594 Query 43023 ACCATTCAGGGACGTGGGCCTAACCTCGCATTTTTGCC----AATTGCATCCGATGTGAG 43078 ||||||| ||||| | || ||| ||||||| || || | | ||||| | ||| Sbjct 4595 TCCATTCAAGGACGCAGCCCGAACGTCGCATTGTTACCGCTGATCTCCATCCCA---GAG 4651 Query 43079 CATGGAAACCTGGATCGAAACGTGGGCGTTTAGTGAAACCATCCACAGCCGTAGTTACAC 43138 ||||||||||||| ||||| ||||| ||| ||||||||||| |||| || || Sbjct 4652 -TTGGAAACCTGGATAGAAACCTGGGCATTTTCAGAAACCATCCATTCCCGTTCCTATAC 4710 Query 43139 GCATATTCAACGTAACTTACACATCGATCCTTCTGTACAGTTCGACCAAATCCTTCGCAA 43198 ||||| || || | || |||||| | | |||||| | ||| || ||| Sbjct 4711 CCATATCATCCGCAATATTGTCAACGATCCGGCACTGGTGTTCGATGATATCGTTACCAA 4770 Query 43199 TGAAGCGATTATGAAACGT 43217 ||||| |||| |||||||| Sbjct 4771 TGAAGAGATTCTGAAACGT 4789 >seq3532 Length=11862 Score = 170 bits (188), Expect = 2e-37 Identities = 150/187 (80%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 51218 GTGGAAGGTGGACAGCATTTAAACGTAAACGTGTTGCGCCGCGAAACTCTCCTGGATGCG 51277 |||||||| || || || | ||||| ||||| ||||||| ||||| || |||||| Sbjct 11335 GTGGAAGGGGGGCAACACCTGAACGTGAACGTTCTGCGCCGTGAAACGCTGGAAGATGCG 11276 Query 51278 GTTGAACATCCTGAAAAATACCCACAGTTAACGATCCGTGTTTCTGGTTATGCAGTGCGT 51337 || |||| || ||||||||||| ||||| || ||||||||||||||||||||||||||| Sbjct 11275 GTAAAACACCCGGAAAAATACCCGCAGTTGACCATCCGTGTTTCTGGTTATGCAGTGCGT 11216 Query 51338 TTTAACTCACTGACCCCTGAACAGCAACGCGACGTTATCGCCCGAACCTTTACAGAGAGT 51397 || |||||| ||||||| ||||||||||| ||||| || | || || || || || || Sbjct 11215 TTCAACTCATTGACCCCAGAACAGCAACGTGACGTGATTACGCGTACTTTCACTGAAAGC 11156 Query 51398 CTATAAT 51404 || |||| Sbjct 11155 CTGTAAT 11149 >seq2333 Length=8475 Score = 140 bits (154), Expect = 4e-28 Identities = 779/1229 (63%), Gaps = 56/1229 (5%) Strand=Plus/Minus Query 152917 TTGCCCGTGCATATATCGAATATCGTCATGATCGTGATATCGCCCGTGAACAAAACGGAA 152976 |||| ||| | || || || || ||||| ||||||||| ||||||| |||||| ||| Sbjct 5739 TTGCACGTACCTACATTGAGTACCGTCACGATCGTGATGTCGCCCGCGAACAACGCGGCC 5680 Query 152977 AATT-ATTCCGTGATATCAAGGGTTTGATGACTCTTAGTAACAAAGAATTAACCAACGAA 153035 || | || | | || || | | ||| | || |||| | | |||||| Sbjct 5679 GTTTGAATCAGGAAATTCGTGGTCTGGTTGAA-CAGAGCAACATGGCCCTGCTCAACGAG 5621 Query 153036 AACGCAAACAAAGATTCTCGCGTATTCCCGACTAAACGCGATCTTCTGGCTGGTATCGTT 153095 ||||| |||||||| | ||| |||| || | ||||| || ||||| ||||||||| Sbjct 5620 AACGCCAACAAAGACAGTAAAGTAATCCCTACCCAGCGCGACCTGCTGGCCGGTATCGTT 5561 Query 153096 TCTAAACA-TATGGCGCGTAACCATATTCTACCGAAACATATTGTTGCGGCGCATGATTC 153154 | || || || | | | ||| |||| || ||| | | || || ||||| Sbjct 5560 GCCAAGCACTACGCCAAGCAAC-ATATCCTGCCGCGCGACGTGGTGCTTGCTCATGAACG 5502 Query 153155 CGGTGATATTCATTATCACGATCTGGATTACAGCCCTTTCACCCC-ATACACTAACTGCT 153213 |||||| ||||| || ||||||||||| ||| ||| ||| ||| || | ||||| Sbjct 5501 CGGTGAAATTCACTACCACGATCTGGACTACTCCCCGTTCTTCCCGATGTTC-AACTGTA 5443 Query 153214 GTCTTGTTGACCTGAAAGGCATGTTAGAAAACGGGTTCCGTATGGGTAACGCTGATATCG 153273 || | ||||| |||||||||| || |||||| ||||||||||| || || | Sbjct 5442 TGCTGATCGACCTTGAAGGCATGTTGACCAAGGGGTTCAAGATGGGTAACGCGGAGATTG 5383 Query 153274 AACCGCCTAAATCAATCGGTGTTGCTACTGCTCTTATGGCTCAGATCACCGCACAGATTG 153333 | || || ||||| ||| || || || | | ||| || |||| ||| ||| | | Sbjct 5382 AGCCACCAAAATCCATCTCAACCGCGACAGCAGTGACGGCCCAAATCATCGCGCAGGTGG 5323 Query 153334 CTTCTCACCAGTACGGCGGGACAACCTTTGCAAATGTCGATCAGGTGCTGGCCCCTTACG 153393 | ||| |||||||| || ||| || | ||||| | | ||||| || | || Sbjct 5322 CAAGCCACATCTACGGCGGCACCACCATTAACCGTATCGATGAAATTCTGGCACCGTTCG 5263 Query 153394 TTGAAATGACGTAC--AACAAACACTTTAAAGATGCTGTT---TGGTACGGGGTTCCTAA 153448 | | | | | || || ||| || ||||| | ||| || |||| | Sbjct 5262 T--CACCGCCAGCCTTAAAAAGCACCGGGAAACTGCTGATGAGTGGCAC---ATTCCCGA 5208 Query 153449 ATCAAAACAGTATGCGATGGAAAAAACAGAAAAGGATGTATTCGATGCGTTCCAGTCATA 153508 | | ||||| || || ||||| || | ||| || |||||||| Sbjct 5207 TGCGGACGCCTATGCACTGTCTCGTACCGAAAAAGAGTGCTACGACGCCTTCCAGTCGCT 5148 Query 153509 CGAATATGAAGTAAACACCTTACATACTGCAAATGGACAGACGCCTTTTGTCACGATCAC 153568 |||||||||||||| || | || || || ||||| ||||| || |||||||| | Sbjct 5147 GGAATATGAAGTAAATACGCTGCACACCGCCAATGGTCAGACACCGTTTGTCACCTTTGG 5088 Query 153569 TTTCGGTATGGGTACTGGTTGGCGCGAA---CGCATGATCCAGAAAGCAATTCTGAAAAA 153625 ||||||| | || || ||||| ||| ||| |||| ||| || | || ||| || Sbjct 5087 TTTCGGTCTCGGCACCCGTTGG---GAATCGCGCCTGATTCAGCAATCCATCCTGCGCAA 5031 Query 153626 CCGTATTCGTGGACTGGGTAAAAAAGGCATTACTCCTGTATTCCCAAAACTGGTTATGTT 153685 ||| ||| || ||||| ||||| | | || | || ||||| |||||||| | Sbjct 5030 CCGCATTGCCGGTCTGGGCAAAAACCGTAAAACCGCGGTGTTCCCCAAACTGGTGTTCGC 4971 Query 153686 TATGGAAAAAGGGATTAACCTTAATCCGGAAGACAGAAACTATGATATTAAGAAATTGGC 153745 ||| | || | || | || | | || |||||||| || ||| || |||| Sbjct 4970 TATCCGCGACGGTGTCAATCACAAGGCTGCCGATCCGAACTATGACATCAAGCAACTGGC 4911 Query 153746 CCTGGAATGTTCTTCAAAGCGTATGTATCCGGATATT----ATTA-GCGCGGCTAATAAC 153800 ||||| || | ||||| ||||| ||||||||| |||| | | | | | | Sbjct 4910 ACTGGATTGCGCCAGCAAGCGGATGTACCCGGATATTCTCAATTACGATCAGGTGGTTAA 4851 Query 153801 CGTCGTATTACTGGCTCTAGCATTCCTGTATCTCCTATGGGTTGTCGTAGTTTCCTTAGC 153860 | |||| |||| | || | | |||||||| || || ||||||||| || Sbjct 4850 GG-----TTACCGGCT----CGTT--TAAGACGCCTATGGGCTGCCGCAGTTTCCTTGGC 4802 Query 153861 GTGTGGAATGATGAGCACGGTAATGAAATTCTTGATGGACGTAATAACCTGGGCGTTGTG 153920 |||| |||| || | || || | || | ||||| || || ||||| || || | Sbjct 4801 GTGT---ATGAGGAAGAGGGCAAGCAGATCCACGATGGTCGCAACAACCTCGGGGTAATC 4745 Query 153921 ACAATCAACCTTCCTCGTATTGCGATTGAAGCCGAAGCACAGGAAGATGAAGACGCGCAT 153980 | ||||||| || || || ||| | ||||| ||| || | | ||||| ||| Sbjct 4744 AGCCTCAACCTGCCGCGCATCGCGCTGGAAGCAGAA-CATA-----ACGAAGA-GCG--- 4695 Query 153981 GATGCATTTTGGCGTATCCTTGATGAACGTCTGGAACTGTGCTTTGAAGCCCTGATGACT 154040 || ||| | | ||| | |||||| ||||| |||| ||||||| Sbjct 4694 -----TTTCTGGAACCTGTTGGATAATCGTCTGCAACTGGCGAAAAAAGCGTTGATGACG 4640 Query 154041 CGTATCGATAGCCTACGCGGTGTTAAAGCCAGTGTAGCCCCGATCCTTTATACAGAAGGT 154100 || ||||| | | || |||||| |||| || || ||||| |||| ||||| Sbjct 4639 CGCATCGAGCGTTTGGAAAACGTCAAAGCCCGTGTCGCTCCAATCCTGTATATGGAAGGC 4580 Query 154101 GCGTTTGGTGTAAGGTTGAAACCCGATGA 154129 || | ||||||| | ||||| | || || Sbjct 4579 GCCTGTGGTGTACGCCTGAAAGCGGACGA 4551 >seq3176 Length=18404 Score = 136 bits (150), Expect = 4e-27 Identities = 132/170 (78%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 51221 GAAGGTGGACAGCATTTAAACGTAAACGTGTTGCGCCGCGAAACTCTCCTGGATGCGGTT 51280 |||||||| || || | ||||| |||||| || ||| |||| || ||||||| | Sbjct 6497 GAAGGTGGTCAACACCTGAACGTGAACGTGATGAACCGTGAAATGCTGTTGGATGCCATG 6438 Query 51281 GAACATCCTGAAAAATACCCACAGTTAACGATCCGTGTTTCTGGTTATGCAGTGCGTTTT 51340 ||||| || |||||||| || ||||| || |||||||||||||||||||| ||||| || Sbjct 6437 GAACACCCGGAAAAATATCCGCAGTTGACCATCCGTGTTTCTGGTTATGCCGTGCGCTTC 6378 Query 51341 AACTCACTGACCCCTGAACAGCAACGCGACGTTATCGCCCGAACCTTTAC 51390 ||||| |||||| |||||||| | |||||||| |||| || || || Sbjct 6377 AACTCGCTGACCAAAGAACAGCAGCAAGACGTTATTACCCGTACTTTCAC 6328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 558039519866880